# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zxmA 400 4.40e-01 1epuA 591 5.62e-01 1dn1A e.25.1.1 43358 1y2qA 143 8.37e-01 1tqjA 230 9.78e-01 c.1.2.2 107228 1v6tA 255 1.08e+00 1pvgA 418 1.59e+00 d.14.1.3,d.122.1.2 95161,95162 2bcqA 335 1.81e+00 1gesA 450 2.19e+00 3grs c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1rz3A 201 2.63e+00 c.37.1.6 98132 2ci1A 275 2.77e+00 1vljA 407 3.11e+00 e.22.1.2 108832 1wqaA 455 3.21e+00 1wy7A 207 3.37e+00 1dlyA 164 3.89e+00 1dlyA a.1.1.1 14983 1o7fA 469 4.43e+00 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1gudA 288 5.16e+00 c.93.1.1 83326 1y8qB 640 5.61e+00 1mp9A 198 5.95e+00 d.129.1.1,d.129.1.1 91385,91386 1vgjA 184 6.25e+00 1v9kA 228 6.91e+00 d.265.1.3 108449 1s69A 124 7.37e+00 a.1.1.1 105305 2ewtA 71 7.44e+00 1trb 320 7.77e+00 1trb c.3.1.5,c.3.1.5 30529,30530 1l3iA 192 9.08e+00 c.66.1.22 77676 1aisA 182 9.50e+00 1ytbA d.129.1.1,d.129.1.1 41288,41289 2fcr 173 1.01e+01 1rcf c.23.5.1 31151 1rzhH 260 1.01e+01 b.41.1.1,f.23.10.1 98162,98163 1c44A 123 1.06e+01 1qndA d.106.1.1 40795 1jg1A 235 1.12e+01 c.66.1.7 66661 1gheA 177 1.16e+01 d.108.1.1 76222 1mdbA 539 1.50e+01 e.23.1.1 79008 1kk1A 410 1.55e+01 b.43.3.1,b.44.1.1,c.37.1.8 72634,72635,72636 1mwmA 320 1.68e+01 c.55.1.1,c.55.1.1 79580,79581 1ufkA 254 1.71e+01 c.66.1.39 99340 1yoxA 250 1.83e+01 1xtqA 177 1.85e+01 2c8vA 288 1.91e+01 2gfgA 193 1.95e+01 1f4pA 147 1.99e+01 5nul c.23.5.1 59651 1v8bA 479 2.06e+01 1ug7A 128 2.18e+01 a.24.24.1 107824 1js3A 486 2.20e+01 c.67.1.6 67215 2culA 232 2.36e+01 4tmkA 213 2.39e+01 5tmpA c.37.1.1 31930 1vlbA 907 2.45e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1y7rA 133 2.48e+01 1cznA 169 2.51e+01 1rcf c.23.5.1 31181 2czdA 208 2.53e+01 1tk9A 188 2.54e+01 c.80.1.3 107082 1qhxA 178 2.59e+01 1qhsA c.37.1.3 31936 1fit 147 2.63e+01 1fit d.13.1.1 37499 1em8A 147 2.64e+01 c.128.1.1 90457 2c6cA 707 2.67e+01 1vzsA 76 2.69e+01 f.45.1.1 108972 1g2iA 166 2.71e+01 1g2iA c.23.16.2 31438 1zatA 250 2.73e+01 1nm2A 317 2.94e+01 c.19.1.1,d.58.23.1 80654,80655 1xniA 118 2.96e+01 1h8eG 272 3.02e+01 1e79G c.49.2.1 60756 1gnlA 544 3.08e+01 e.26.1.1 70287 2bjiA 277 3.11e+01 1oboA 169 3.13e+01 c.23.5.1 86776 2ajrA 331 3.19e+01 2fnuA 375 3.19e+01 2bkrA 212 3.20e+01 2b0aA 186 3.23e+01 1z4rA 168 3.46e+01 1zowA 313 3.55e+01 2fliA 220 3.57e+01 1cqxA 403 3.59e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 1wd3A 482 3.62e+01 b.29.1.21,b.42.8.1 109233,109234 2a40B 260 3.71e+01 1axn 323 3.77e+01 1avc a.65.1.1 18149 1qy1A 174 3.81e+01 b.60.1.1 96568 1usgA 346 3.88e+01 c.93.1.1 99864 2abwA 227 3.90e+01 1dljA 402 3.97e+01 1dliA a.100.1.4,c.2.1.6,c.26.3.1 18808,30212,31621 1wjtA 103 3.99e+01 1vimA 200 3.99e+01 c.80.1.3 100758 1a7j 290 4.24e+01 1a7j c.37.1.6 31952 1ezwA 349 4.26e+01 1ezwA c.1.16.3 29558 1wijA 140 4.26e+01 1fpzA 212 4.32e+01 1fpzA c.45.1.1 59976 1n8fA 350 4.41e+01 c.1.10.4 85397 1yz7A 188 4.43e+01 1wmqA 147 4.45e+01 1u7iA 136 4.48e+01 d.32.1.7 107724 1j98A 157 4.55e+01 1j98A d.185.1.2 62755 1gt1A 159 4.55e+01 b.60.1.1 90515 1ft5A 211 4.76e+01 1bvb a.138.1.3 19681 2a2kA 175 4.78e+01 1bvyF 191 4.79e+01 1bvyF c.23.5.1 31207 1ddgA 374 5.16e+01 1amoA b.43.4.1,c.25.1.4 25671,31559 1j9lA 247 5.17e+01 c.106.1.1 62762 1m6iA 493 5.18e+01 c.3.1.5,c.3.1.5,d.87.1.1 74533,74534,74535 1oq9A 363 5.26e+01 a.25.1.2 87257 2bgiA 272 5.35e+01 2b0cA 206 5.35e+01 1vmaA 306 5.36e+01 a.24.13.1,c.37.1.10 108887,108888 1gpjA 404 5.40e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1uslA 170 5.40e+01 c.121.1.1 99871 1j34B 123 5.51e+01 d.169.1.1 84049 1cp2A 269 5.53e+01 1cp2A c.37.1.10 32269 1wqsA 173 5.55e+01 1zndA 174 5.63e+01 2erxA 172 5.65e+01 1gefA 123 5.68e+01 1gefA c.52.1.18 60465 1w1wE 121 5.81e+01 1wpuA 147 5.89e+01 1n2sA 299 5.92e+01 c.2.1.2 79857 1gntA 553 5.95e+01 e.26.1.1 70290 1b00A 127 6.00e+01 3chy c.23.1.1 31122 1jg5A 83 6.02e+01 d.205.1.1 66666 1ki9A 192 6.03e+01 c.37.1.1 84404 1v5vA 401 6.06e+01 1v60A 123 6.07e+01 1z15A 344 6.08e+01 3grs 478 6.16e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30441,30442,40152 1tzfA 259 6.24e+01 c.68.1.13 107476 2gjsA 176 6.26e+01 1knvA 293 6.43e+01 c.52.1.7 68707 1tw9A 206 6.46e+01 a.45.1.1,c.47.1.5 107381,107382 1b5l 172 6.58e+01 1b5l a.26.1.3 16900 1et9A 204 6.59e+01 1an8 b.40.2.2,d.15.6.1 25204,37793 1kv7A 488 6.62e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1wb4A 297 6.79e+01 1rypL 212 6.83e+01 d.153.1.4 41880 1qsmA 152 6.84e+01 1qsmA d.108.1.1 40808 1qhfA 240 6.94e+01 1qhfA c.60.1.1 33960 1rp4A 389 6.97e+01 a.227.1.1 105027 1ymkA 175 7.03e+01 1oqvA 192 7.03e+01 d.24.1.2 87320 2csgA 424 7.04e+01 1rl6A 177 7.24e+01 1rl6A d.141.1.1,d.141.1.1 41473,41474 1uzbA 516 7.45e+01 c.82.1.1 100220 1ka1A 357 7.54e+01 e.7.1.1 68369 1hm6A 346 7.58e+01 1avc a.65.1.1 18147 1snnA 227 7.64e+01 d.115.1.2 105821 1b5eA 246 7.71e+01 1b5eA d.117.1.1 41056 1vkyA 347 7.87e+01 e.53.1.1 108696 1r8sE 203 7.90e+01 a.118.3.1 97248 1vkmA 297 7.92e+01 c.138.1.1 108670 1gxjA 186 7.94e+01 d.215.1.1 70707 1jihA 531 7.96e+01 d.240.1.1,e.8.1.7 90374,90375 1a3aA 148 8.01e+01 1a3aA d.112.1.1 40917 2dbnA 461 8.02e+01 1wd7A 261 8.05e+01 2fm8A 135 8.10e+01 2bivA 243 8.14e+01 1ru3A 732 8.22e+01 e.26.1.3 97835 1ow1A 195 8.29e+01 b.131.1.3 93625 1h7zA 194 8.40e+01 1qhvA b.21.1.1 60733 1q7eA 428 8.51e+01 c.123.1.1 96035 1hbwA 57 8.66e+01 1hbwA h.1.3.1 60928 2cvzA 289 8.69e+01 1ltqA 301 8.85e+01 c.108.1.9,c.37.1.1 78208,78209 1g291 372 8.87e+01 1g291 1oe8A 211 8.96e+01 a.45.1.1,c.47.1.5 86905,86906