Best Alignments for T0354

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1y2qA/T0354-1y2qA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1y2qA/T0354-1y2qA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.0642e-012.16e-07
1mp9A/T0354-1mp9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1mp9A/T0354-1mp9A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1211e+007.15e-09 d.129.1.1
d.129.1.1
2gfgA/T0354-2gfgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2gfgA/T0354-2gfgA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.0857e+009.46e-06
1v6tA/T0354-1v6tA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1v6tA/T0354-1v6tA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.3385e+001.40e-07
1ufkA/T0354-1ufkA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ufkA/T0354-1ufkA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.7224e+002.29e-13 c.66.1.39
1vljA/T0354-1vljA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vljA/T0354-1vljA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.1035e+009.47e-06 e.22.1.2
1s69A/T0354-1s69A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1s69A/T0354-1s69A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.8222e+002.08e-03 a.1.1.1
1wqaA/T0354-1wqaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1wqaA/T0354-1wqaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 4.8354e+009.36e-04
1g7uA/T0354-1g7uA-t04-local-adpstyle1.a2m 1g7uA/T0354-1g7uA-t04-local-adpstyle1.al 5.2998e+004.10e+00 1d9eA c.1.10.4
1vgjA/T0354-1vgjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vgjA/T0354-1vgjA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.8073e+007.64e-08

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001