# List of top-scoring protein chains for T0354.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1g7uA 284 1.69e+00 1d9eA c.1.10.4 60334 2gfgA 193 1.77e+00 2gibA 103 5.24e+00 1sg3A 349 5.35e+00 b.18.1.22,b.18.1.22 98847,98848 1o59A 355 5.39e+00 b.18.1.22,b.18.1.22 92495,92496 1gh0A 162 5.61e+00 1cpcA a.1.1.3 60491 1ha7A 162 5.92e+00 a.1.1.3 70935 1y8qB 640 6.72e+00 1wijA 140 7.34e+00 1dgjA 907 7.73e+00 1alo a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 17909,37694,38585,41415 2gjlA 328 8.22e+00 1uvxA 121 8.71e+00 a.1.1.1 100067 1u7iA 136 9.80e+00 d.32.1.7 107724 1dlyA 164 9.96e+00 1dlyA a.1.1.1 14983 1ddvA 111 1.04e+01 1evhA b.55.1.4 27002 1ybtA 184 1.13e+01 1ddwA 120 1.13e+01 1evhA b.55.1.4 27001 1z4rA 168 1.18e+01 1t71A 281 1.19e+01 1mp9A 198 1.23e+01 d.129.1.1,d.129.1.1 91385,91386 1bh9B 89 1.27e+01 1bh9B a.22.1.3 16485 1y2qA 143 1.28e+01 1wa3A 205 1.30e+01 1vlwA 217 1.33e+01 c.1.10.1 108868 1uhtA 118 1.33e+01 b.26.1.2 99401 1wo8A 126 1.44e+01 2a10A 125 1.45e+01 1i2hA 168 1.47e+01 b.55.1.4 71103 1jdqA 98 1.55e+01 d.68.3.3 66559 1cm0A 168 1.60e+01 1yghA d.108.1.1 40800 1v9kA 228 1.68e+01 d.265.1.3 108449 1xpiA 231 1.72e+01 2c5kP 24 1.73e+01 1nekB 238 1.74e+01 a.1.2.1,d.15.4.2 80429,80430 1eysM 324 1.83e+01 6prcM f.26.1.1 43516 1vljA 407 2.02e+01 e.22.1.2 108832 1epuA 591 2.04e+01 1dn1A e.25.1.1 43358 1vlbA 907 2.15e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1iruJ 205 2.18e+01 d.153.1.4 71361 2cr0A 121 2.28e+01 1wzcA 249 2.72e+01 1e1dA 553 2.75e+01 1e1dA e.26.1.1 43363 1gntA 553 2.75e+01 e.26.1.1 70290 1za7A 165 2.77e+01 1wfiA 131 2.97e+01 1js1X 324 3.04e+01 c.78.1.1,c.78.1.1 71834,71835 2fg6C 338 3.11e+01 1wy7A 207 3.12e+01 2ewtA 71 3.17e+01 1cwpA 190 3.19e+01 1cwpA b.121.4.5 23305 2d92A 108 3.20e+01 1phwA 284 3.25e+01 c.1.10.4 104155 2c5wB 385 3.55e+01 1rtxA 123 3.59e+01 a.1.1.1 97827 2c6wB 384 3.59e+01 1s69A 124 3.62e+01 a.1.1.1 105305 1tqjA 230 3.62e+01 c.1.2.2 107228 1gnlA 544 3.71e+01 e.26.1.1 70287 1rkiA 102 3.79e+01 1t3bA 211 4.01e+01 c.47.1.9,d.17.3.1 106341,106342 1v6tA 255 4.04e+01 1s16A 390 4.12e+01 d.14.1.3,d.122.1.2 98331,98332 1gesA 450 4.28e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30473,30474,40168 1m2zA 257 4.31e+01 a.123.1.1 84768 1nhzA 280 4.32e+01 a.123.1.1 85727 2f83A 625 4.34e+01 1wu7A 434 4.47e+01 1j98A 157 4.49e+01 1j98A d.185.1.2 62755 1gerA 450 4.52e+01 3grs c.3.1.5,c.3.1.5,d.87.1.1 30477,30478,40170 1o5zA 442 4.66e+01 c.59.1.2,c.72.2.2 92530,92531 2gr8A 99 4.69e+01 1tzjA 338 4.86e+01 2gl5A 410 4.92e+01 1a04A 215 4.95e+01 1a04A a.4.6.2,c.23.1.1 16234,31089 1kg0C 136 4.99e+01 d.169.1.1 72445 1za4A 251 4.99e+01 1iy8A 267 5.06e+01 c.2.1.2 83774 1lt8A 406 5.13e+01 c.1.26.1 78186 2fc7A 82 5.20e+01 1umyA 407 5.48e+01 c.1.26.1 99635 1tdf 316 5.75e+01 1trb c.3.1.5,c.3.1.5 30533,30534 1ufkA 254 5.80e+01 c.66.1.39 99340 1tde 316 5.84e+01 1trb c.3.1.5,c.3.1.5 30531,30532 1trb 320 5.92e+01 1trb c.3.1.5,c.3.1.5 30529,30530 2asfA 137 5.92e+01 1kv7A 488 5.99e+01 b.6.1.3,b.6.1.3,b.6.1.3 68873,68874,68875 1qexA 288 6.03e+01 1qexA b.32.1.1 24425 1cl0A 320 6.03e+01 1trb c.3.1.5,c.3.1.5 30535,30536 1s1iH 191 6.13e+01 i.1.1.1 105182 1f6mA 320 6.17e+01 1trb c.3.1.5,c.3.1.5 30537,30538 1twfK 120 6.25e+01 1oxsC 353 6.26e+01 b.40.6.3,c.37.1.12 87519,87520 1oxxK 353 6.29e+01 b.40.6.3,c.37.1.12 93715,93716 1tib 269 6.33e+01 3tgl c.69.1.17 34738 1q1hA 110 6.43e+01 a.4.5.41 95580 1gt6A 269 6.48e+01 c.69.1.17 76342 2afaA 425 6.71e+01 1x4tA 92 6.77e+01 1yclA 156 6.83e+01 1jv4A 162 6.93e+01 b.60.1.1 67343 1a87 321 7.08e+01 1a87 f.1.1.1 43380 1mup 166 7.16e+01 1mup b.60.1.1 27133 2a9bA 372 7.24e+01 2a9aA 372 7.25e+01 1zndA 174 7.25e+01 2a9dA 372 7.33e+01 1uvhA 183 7.34e+01 1i06A 180 7.45e+01 1mup b.60.1.1 27131 1g8lA 411 7.51e+01 1g8lA b.85.6.1,b.103.1.1,c.57.1.2 60365,60366,60367 2cseD 365 7.57e+01 1jmuG 366 7.59e+01 d.196.1.1 66894 1efpA 307 7.84e+01 1efvA c.26.2.3,c.31.1.2 31635,31729 1y43B 173 7.84e+01 1ssfA 156 7.97e+01 b.34.9.1,b.34.9.1 105982,105983 1joi 128 8.02e+01 1nwpA b.6.1.1 23010 1zjjA 263 8.31e+01 1kanA 253 8.32e+01 1knyA a.24.16.1,d.218.1.1 75878,75879 1ox3A 109 8.40e+01 h.1.17.1 93668 2gr7A 129 8.40e+01 1soxA 466 8.48e+01 1soxA b.1.18.6,d.120.1.1,d.176.1.1 21947,41090,42563 1ie0A 157 8.55e+01 d.185.1.2 66120 1pf3A 498 8.56e+01 b.6.1.3,b.6.1.3,b.6.1.3 88049,88050,88051 1knyA 253 8.74e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 1rw4A 272 8.83e+01 c.37.1.10 97962 1xupO 487 8.91e+01 2cdqA 510 8.94e+01