Best Alignments for T0353

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1y8qA/T0353-1y8qA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1y8qA/T0353-1y8qA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4553e+001.22e-03
1is8K/T0353-1is8K-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1is8K/T0353-1is8K-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.1715e+001.82e-03 d.205.1.1
2faoA/T0353-2faoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2faoA/T0353-2faoA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.7066e+002.01e-03
1t0hB/T0353-1t0hB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t0hB/T0353-1t0hB-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.9104e+002.39e-02 c.37.1.1
2drpA/T0353-2drpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2drpA/T0353-2drpA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0223e+019.73e+00 2drpA g.37.1.1
g.37.1.1
1ffkI/T0353-1ffkI-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ffkI/T0353-1ffkI-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0530e+012.67e+02 1ffkI d.12.1.2
1t3lA/T0353-1t3lA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1t3lA/T0353-1t3lA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1214e+017.17e-04 b.34.2.1
c.37.1.1
2cybA/T0353-2cybA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2cybA/T0353-2cybA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1335e+016.85e-04
1mdvA/T0353-1mdvA-t2k-global-adpstyle1.a2m 1mdvA/T0353-1mdvA-t2k-global-adpstyle1.al 1.2007e+017.26e+00 3cyr a.138.1.1
1y9kA/T0353-1y9kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1y9kA/T0353-1y9kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2602e+015.51e-08

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001