# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sgvA 316 5.01e-01 b.122.1.1,d.265.1.2 98858,98859 1jg5A 83 6.60e-01 d.205.1.1 66666 1r3eA 309 8.68e-01 b.122.1.1,d.265.1.2 96907,96908 2faoA 309 1.26e+00 2cybA 323 1.68e+00 1u7iA 136 1.70e+00 d.32.1.7 107724 1y8qA 346 1.95e+00 1f1xA 322 2.05e+00 d.32.1.3,d.32.1.3 83208,83209 1f1uA 323 2.21e+00 d.32.1.3,d.32.1.3 83200,83201 1a99A 344 2.36e+00 1pot c.94.1.1 35812 1e5dA 402 2.38e+00 1e5dA c.23.5.1,d.157.1.3 31208,42061 1z02A 446 2.66e+00 1wm3A 72 3.02e+00 1xgsA 295 3.15e+00 1bn5 a.4.5.25,d.127.1.1 16216,41153 2mhr 118 3.81e+00 2mhr a.24.4.1 16581 1fyhB 229 3.82e+00 1jrhI b.1.2.1,b.1.2.1 22055,22056 1j34B 123 3.87e+00 d.169.1.1 84049 1pzwA 80 3.98e+00 g.39.1.10 95483 1t0hB 224 4.17e+00 c.37.1.1 106208 1ww9A 392 4.52e+00 1anf 370 4.54e+00 4mbp c.94.1.1 35776 1jykA 254 4.97e+00 c.68.1.13 67458 1q5yA 85 5.17e+00 d.58.18.4 95950 1j0pA 108 5.55e+00 a.138.1.1 90743 1ytvA 366 5.61e+00 1fukA 165 6.61e+00 1fukA c.37.1.19 32409 1vjeA 166 6.72e+00 d.185.1.2 100807 1y9wA 140 6.77e+00 2d8sA 80 7.11e+00 2f20A 240 7.17e+00 2gtqA 867 7.26e+00 1f0xA 571 7.42e+00 1f0xA d.58.32.2,d.145.1.1 39483,41746 1o0xA 262 7.68e+00 d.127.1.1 80755 1va4A 279 7.70e+00 c.69.1.12 108458 2fb6A 117 7.97e+00 1k8wA 327 8.60e+00 b.122.1.1,d.265.1.2 83094,90388 1ldjA 760 8.66e+00 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1yqfA 203 9.13e+00 1nf2A 268 9.74e+00 c.108.1.10 91849 3seb 238 1.04e+01 3seb b.40.2.2,d.15.6.1 25184,37773 1uekA 275 1.05e+01 d.14.1.5,d.58.26.5 88483,88484 1v4pA 157 1.05e+01 1j3mA 129 1.14e+01 d.129.7.1 103836 1n3lA 372 1.17e+01 c.26.1.1 79966 1nh0A 99 1.23e+01 b.50.1.1 91869 2f7fA 494 1.23e+01 1brwA 433 1.25e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1k2eA 156 1.26e+01 d.113.1.1 72010 1wojA 214 1.29e+01 1z08A 170 1.30e+01 1dq3A 454 1.32e+01 1dq3A b.86.1.2,d.50.3.1,d.95.2.2,d.95.2.2 28380,38798,40585,40586 1b6a 478 1.33e+01 1bn5 a.4.5.25,d.127.1.1 16223,41160 1ww8A 439 1.35e+01 1gmlA 178 1.42e+01 c.8.5.2 70273 1xkzA 255 1.46e+01 1sqiA 393 1.61e+01 d.32.1.3,d.32.1.3 105914,105915 2ggcA 263 1.62e+01 2c1lA 358 1.64e+01 1l8bA 190 1.69e+01 d.86.1.1 73683 1bkpA 278 1.75e+01 1bkpA d.117.1.1 41029 2gupA 292 1.79e+01 1yemA 179 1.79e+01 3il8 72 1.80e+01 1tvxA d.9.1.1 37356 1q67A 231 1.85e+01 b.55.1.7 95960 1t0fA 276 1.90e+01 1u5mA 73 1.91e+01 1qysA 106 1.92e+01 k.41.1.1 96603 1iukA 140 1.94e+01 c.2.1.8 83712 1x9dA 538 1.94e+01 1wzcA 249 1.95e+01 2c4wA 176 2.00e+01 1gsoA 431 2.02e+01 1gsoA b.84.2.1,c.30.1.1,d.142.1.2 28240,31647,41492 1m6eX 359 2.09e+01 c.66.1.35 91188 2b9eA 303 2.10e+01 1vd4A 62 2.14e+01 1qo7A 394 2.26e+01 1qo7A c.69.1.11 34697 1ockA 412 2.44e+01 c.117.1.1 86802 2f5gA 133 2.44e+01 1zu0A 529 2.47e+01 1j6wA 175 2.53e+01 1j98A d.185.1.2 62663 1y60A 169 2.56e+01 1reqB 637 2.73e+01 1reqB c.1.19.1,c.23.6.1 29621,31248 2apoA 357 2.74e+01 1xnzA 264 2.78e+01 1vp8A 201 2.79e+01 1yp1A 202 2.80e+01 2gi9A 56 2.82e+01 1yzhA 214 2.91e+01 1v7rA 186 2.91e+01 c.51.4.1 100482 2ctoA 93 2.92e+01 1x0rA 249 2.92e+01 2fhzA 109 2.93e+01 2bvcA 486 2.94e+01 1edn 21 2.94e+01 j.28.1.1 46197 1udzA 182 3.00e+01 b.51.1.1 99239 1tw7A 99 3.04e+01 2a9sA 171 3.04e+01 1s68A 249 3.13e+01 d.142.2.4 98591 1vl5A 260 3.14e+01 c.66.1.41 108720 1j8rA 196 3.27e+01 1j8rA b.2.3.3 62745 2fb0A 94 3.30e+01 1w6uA 302 3.35e+01 1v25A 541 3.45e+01 e.23.1.1 108275 1w41A 101 3.53e+01 1u6pA 56 3.55e+01 1ny1A 240 3.55e+01 c.6.2.3 86395 1rypL 212 3.56e+01 d.153.1.4 41880 1t6aA 126 3.58e+01 d.129.8.1 106555 1ve0A 134 3.61e+01 1heiA 451 3.62e+01 1heiA c.37.1.14,c.37.1.14 32463,32464 2d5cA 263 3.62e+01 1srb 21 3.65e+01 j.28.1.1 46201 1vqoU 66 3.70e+01 1e0bA 68 3.72e+01 1e0bA b.34.13.2 37476 1ubkL 534 3.80e+01 e.18.1.1 88422 1rxyA 253 3.82e+01 c.56.2.1 98065 1s2oA 244 3.83e+01 1vqoM 195 3.83e+01 2d4pA 141 3.85e+01 1jidA 128 3.90e+01 d.201.1.1 66735 2a3mA 130 3.95e+01 1o4wA 147 3.96e+01 c.120.1.1 86629 2fulA 178 3.97e+01 2cvlA 124 4.01e+01 2aqjA 538 4.03e+01 2bcgY 206 4.05e+01 2eryA 172 4.08e+01 1vlmA 219 4.10e+01 c.66.1.41 108836 1hh1A 143 4.12e+01 1gefA c.52.1.18 61036 1yqdA 366 4.18e+01 1j7gA 144 4.22e+01 c.110.1.1 84130 1qloA 34 4.23e+01 1qloA j.35.1.1 46281 1ln1A 214 4.35e+01 d.129.3.2 74038 1k38A 254 4.38e+01 e.3.1.1 84303 2ethA 154 4.38e+01 2a14A 263 4.41e+01 1r6wA 322 4.49e+01 c.1.11.2,d.54.1.1 97165,97166 1pot 325 4.51e+01 1pot c.94.1.1 35807 1cqqA 180 4.56e+01 1cqqA b.47.1.4 26422 1mkiA 330 4.56e+01 e.3.1.2 84994 1mp9A 198 4.56e+01 d.129.1.1,d.129.1.1 91385,91386 1ogwA 76 4.57e+01 d.15.1.1 87001 1wd7A 261 4.63e+01 1gefA 123 4.65e+01 1gefA c.52.1.18 60465 2bolA 314 4.70e+01 2fi0A 81 4.70e+01 2b1xA 470 4.70e+01 2b18A 164 4.77e+01 1l1qA 186 4.81e+01 c.61.1.1 77653 1e25A 282 4.88e+01 1e25A e.3.1.1 42731 1wcwA 261 4.89e+01 1kq6A 141 4.91e+01 d.189.1.1 91020 1n71A 180 4.92e+01 d.108.1.1 85370 2f94F 350 4.96e+01 1o22A 170 4.97e+01 d.238.1.1 86557 1wnyA 186 5.01e+01 1n13B 113 5.02e+01 2b8tA 223 5.08e+01 1m4rA 151 5.15e+01 a.26.1.3 84799 1zhsA 113 5.21e+01 1eo1A 124 5.33e+01 1eo1A c.55.5.1 33739 1ufkA 254 5.34e+01 c.66.1.39 99340 1lfdA 87 5.36e+01 1lfdA d.15.1.5 37622 1lkoA 191 5.40e+01 a.25.1.1,g.41.5.1 78063,78064 1l7mA 211 5.50e+01 c.108.1.4 73664 2fgeA 995 5.50e+01 1vchA 175 5.53e+01 1wi1A 126 5.54e+01 1u7lA 392 5.54e+01 2adzA 178 5.56e+01 1l7yA 94 5.61e+01 d.15.1.6 73676 2gcc 70 5.63e+01 2gcc d.10.1.2 37484 1ctqA 166 5.64e+01 1ctqA c.37.1.8 31965 1fmb 104 5.73e+01 1fmb b.50.1.1 26777 1jmuB 666 5.77e+01 2ptd 298 5.80e+01 2plc c.1.18.2 29605 1xuuA 349 5.84e+01 2bkrA 212 5.87e+01 2d1pA 140 5.91e+01 1o1xA 155 6.02e+01 c.121.1.1 86553 1ignA 246 6.07e+01 1ignA a.4.1.6,a.4.1.6 16048,16049 1ju3A 583 6.08e+01 b.18.1.13,c.69.1.21 67300,67301 1us0A 316 6.15e+01 c.1.7.1 99850 1e8gA 560 6.16e+01 1qltA d.58.32.1,d.145.1.1 39455,41718 1m2oA 768 6.17e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1z1zA 131 6.21e+01 1up9A 107 6.22e+01 1u20A 212 6.25e+01 1v5iB 76 6.28e+01 1klrA 30 6.31e+01 g.37.1.1 72722 1xwyA 264 6.37e+01 1z57A 339 6.38e+01 1wriA 93 6.44e+01 1v9nA 360 6.46e+01 1yj1A 76 6.46e+01 1wurA 220 6.46e+01 1gci 269 6.46e+01 1gci c.41.1.1 32503 2fblA 153 6.47e+01 1wv9A 94 6.49e+01 1xc3A 302 6.59e+01 1ys4A 354 6.64e+01 2fexA 188 6.65e+01 1mtpB 43 6.69e+01 1dleA 298 6.72e+01 1dleA b.47.1.2 26312 1gqpA 221 6.74e+01 b.18.1.9 70372 1jnrB 150 6.78e+01 d.58.1.5 66969 1njqA 39 6.78e+01 g.37.1.3 85822 1otkA 249 6.79e+01 a.25.1.2 93521 1mbyA 88 6.79e+01 d.223.1.1 78931 1k55A 246 6.83e+01 e.3.1.1 68156 2ae0X 345 6.85e+01 1s57A 153 6.97e+01 1z5hA 780 7.00e+01 1y0hA 105 7.01e+01 1sw6A 327 7.12e+01 1sw6A d.211.1.1 19176 1tc5A 194 7.12e+01 c.110.1.1 106752 2gaeA 346 7.13e+01 2bgcA 238 7.21e+01 1gnkA 112 7.25e+01 2pii d.58.5.1 39073 1jh6A 189 7.26e+01 d.61.1.1 66707 1yndA 165 7.28e+01 1li4A 432 7.31e+01 c.2.1.4,c.23.12.3 84616,84617 1i1qA 520 7.32e+01 1qdlA d.161.1.1 61543 1ftrA 296 7.38e+01 1ftrA d.58.33.1,d.58.33.1 39485,39486 1vqoH 171 7.44e+01 1pwgA 349 7.46e+01 e.3.1.1 104340 1yqsA 349 7.46e+01 1r1qA 100 7.48e+01 d.93.1.1 104763 1zejA 293 7.49e+01 2gs5A 198 7.50e+01 1q8dA 108 7.60e+01 a.228.1.1 104554 2bwqA 129 7.65e+01 1ur6B 52 7.74e+01 g.44.1.1 99812 1om4A 422 7.78e+01 d.174.1.1 87067 1j6qA 136 7.79e+01 b.40.9.1 77091 1k78A 149 7.80e+01 a.4.1.5,a.4.1.5 68255,68256 1ayaA 101 7.80e+01 1qadA d.93.1.1 40460 1fe0A 68 7.83e+01 1cc8A d.58.17.1 39345 1vq3A 94 7.83e+01 1wosA 364 7.94e+01 b.44.2.1,d.250.1.1 109468,109469 1kb9B 352 7.99e+01 d.185.1.1,d.185.1.1 77313,77314 1otgA 125 8.03e+01 1otgA d.80.1.2 39831 1jg1A 235 8.04e+01 c.66.1.7 66661 1z5yE 149 8.12e+01 2g30A 258 8.21e+01 1qh5A 260 8.25e+01 1qh5A d.157.1.2 42057 1yseA 141 8.31e+01 1n9lA 109 8.31e+01 d.110.3.6 85468 2b0cA 206 8.42e+01 1fzqA 181 8.48e+01 1hurA c.37.1.8 32060 1izmA 184 8.50e+01 a.199.1.1 90725 1r26A 125 8.50e+01 c.47.1.1 96847 1wj9A 211 8.54e+01 1yqzA 438 8.60e+01 1dxeA 256 8.60e+01 1dxeA c.1.12.5 29310 1u11A 182 8.71e+01 c.23.8.1 107576 2ewcA 126 8.77e+01 2igd 61 8.78e+01 2igd d.15.7.1 37821 1zljA 78 8.79e+01 1r0rI 51 8.82e+01 g.68.1.1 96736 1w85I 49 8.83e+01 1ivyA 452 8.90e+01 1ivyA c.69.1.5 34654 1jkeA 145 8.99e+01 c.110.1.1 66791 1nddA 76 8.99e+01 1ubi d.15.1.1 37599