# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1udzA 182 3.48e-01 b.51.1.1 99239 1y8qA 346 8.34e-01 1wnyA 186 1.23e+00 1th0A 226 1.47e+00 d.3.1.7 106903 1tqhA 247 1.66e+00 c.69.1.29 107225 1n9lA 109 1.98e+00 d.110.3.6 85468 2d8sA 80 2.99e+00 1t0hB 224 4.68e+00 c.37.1.1 106208 1ldjA 760 5.55e+00 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1apyA 162 7.29e+00 1apyA d.153.1.5 42004 1edn 21 7.39e+00 j.28.1.1 46197 1srb 21 7.67e+00 j.28.1.1 46201 1x4tA 92 9.36e+00 2acy 98 1.05e+01 2acy d.58.10.1 39298 2cqeA 98 1.22e+01 1v8bA 479 1.39e+01 1qo7A 394 1.41e+01 1qo7A c.69.1.11 34697 1ta3B 303 1.41e+01 c.1.8.3 106732 1w85A 368 1.43e+01 1s1hN 36 1.43e+01 i.1.1.1 105166 1rcwA 231 1.49e+01 a.132.1.4 97299 1uzxA 169 1.49e+01 d.20.1.2 100238 1vd4A 62 1.55e+01 2glzA 153 1.57e+01 2c5qA 240 1.57e+01 2d5xA 141 1.61e+01 2sak 121 1.62e+01 2sak d.15.5.1 37711 1xreA 217 1.71e+01 2d8qA 70 1.71e+01 2mhr 118 1.74e+01 2mhr a.24.4.1 16581 1dxrC 336 1.97e+01 6prcC a.138.1.2 19670 1vqoU 66 2.07e+01 1d0cA 444 2.10e+01 d.174.1.1 64769 1s62A 106 2.10e+01 1m4rA 151 2.11e+01 a.26.1.3 84799 2a4hA 126 2.16e+01 1v4pA 157 2.17e+01 1x99A 145 2.19e+01 1t4wA 196 2.29e+01 b.2.5.2 106427 2gs5A 198 2.33e+01 1u6pA 56 2.33e+01 2br9A 234 2.34e+01 1nqkA 381 2.43e+01 c.1.16.4 92050 2flsA 132 2.45e+01 1v93A 296 2.48e+01 c.1.23.1 100532 1irdA 141 2.49e+01 a.1.1.2 66286 2bv4A 113 2.51e+01 2fulA 178 2.57e+01 1wojA 214 2.59e+01 1jmxA 494 2.63e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1otkA 249 2.64e+01 a.25.1.2 93521 1wohA 305 2.70e+01 c.42.1.1 109446 2faoA 309 2.85e+01 2ffwA 78 3.05e+01 1lmzA 187 3.07e+01 a.96.1.4 74037 2bh4X 134 3.13e+01 1ls9A 91 3.29e+01 a.3.1.1 78177 1pbyA 489 3.32e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 1m3qA 317 3.35e+01 a.96.1.3,d.129.1.2 91184,91185 2cybA 323 3.38e+01 1yd0A 96 3.38e+01 1om4A 422 3.44e+01 d.174.1.1 87067 2db3A 434 3.58e+01 1j0pA 108 3.59e+01 a.138.1.1 90743 1tuwA 109 3.62e+01 d.58.4.8 107346 2d9kA 75 3.71e+01 1ctj 89 3.71e+01 1ctj a.3.1.1 15798 1o9yA 84 3.75e+01 b.139.1.1 92692 1q42A 201 3.78e+01 d.17.4.2 95776 2bg1A 494 3.79e+01 1nc5A 373 3.99e+01 a.102.1.6 85548 1m3uA 264 4.06e+01 c.1.12.8 84784 2be4A 272 4.10e+01 1xwvA 129 4.14e+01 1j3mA 129 4.17e+01 d.129.7.1 103836 1k78A 149 4.23e+01 a.4.1.5,a.4.1.5 68255,68256 1ppjA 446 4.24e+01 d.185.1.1,d.185.1.1 104252,104253 1weoA 93 4.25e+01 1lk2A 274 4.33e+01 b.1.1.2,d.19.1.1 91056,91057 1l8bA 190 4.34e+01 d.86.1.1 73683 1ln1A 214 4.36e+01 d.129.3.2 74038 1w4xA 542 4.41e+01 c.3.1.5,c.3.1.5 109171,109172 1owtA 66 4.64e+01 d.230.3.1 87493 1jo0A 98 4.73e+01 d.68.4.1 77140 1pfvA 551 4.85e+01 a.27.1.1,c.26.1.1,g.41.1.1 94660,94661,94662 1dceB 331 4.94e+01 1dceB a.102.4.3 18872 1u5mA 73 4.97e+01 2b95A 106 4.99e+01 1juvA 193 5.14e+01 c.71.1.1 90912 1z84A 351 5.31e+01 1vp8A 201 5.39e+01 1y9wA 140 5.48e+01 1ohvA 472 5.59e+01 c.67.1.4 93031 1z54A 132 5.62e+01 1x0rA 249 5.73e+01 1r0rI 51 5.76e+01 g.68.1.1 96736 1bjaA 95 5.76e+01 1bjaA a.4.5.9 16122 2ct0A 74 5.78e+01 1w41A 101 5.79e+01 1p2hA 571 5.79e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 1a99A 344 5.82e+01 1pot c.94.1.1 35812 2c7nA 74 5.90e+01 2d1uA 104 5.97e+01 1jykA 254 6.44e+01 c.68.1.13 67458 2aqlA 173 6.56e+01 1jg5A 83 6.64e+01 d.205.1.1 66666 1n8yC 608 6.66e+01 c.10.2.5,c.10.2.5,g.3.9.1,g.3.9.1 80314,80315,80316,80317 2f86B 143 6.69e+01 2c1xA 456 6.70e+01 1kyhA 276 6.73e+01 c.72.1.4 73222 2gv8A 447 6.73e+01 2a3mA 130 6.89e+01 1ngnA 155 6.99e+01 a.96.1.2 85697 1bh0 29 7.02e+01 j.6.1.1 46102 1jcfA 344 7.29e+01 c.55.1.1,c.55.1.1 62878,62879 1wh0A 134 7.41e+01 1z57A 339 7.55e+01 1zd0A 150 7.68e+01 2fwtA 125 7.68e+01 1vqzA 341 7.70e+01 1yixA 265 7.73e+01 1sc3B 88 7.76e+01 1ur6B 52 7.85e+01 g.44.1.1 99812 1gefA 123 7.85e+01 1gefA c.52.1.18 60465 2b4zA 104 7.90e+01 1f1xA 322 8.01e+01 d.32.1.3,d.32.1.3 83208,83209 1hyeA 313 8.04e+01 2cmd c.2.1.5,d.162.1.1 61400,61401 1xsvA 113 8.19e+01 1brwA 433 8.20e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1cg5A 141 8.30e+01 1abwA a.1.1.2 15406 1li4A 432 8.35e+01 c.2.1.4,c.23.12.3 84616,84617 1fm0E 150 8.41e+01 1fmaE d.41.5.1 38629 1ngkA 128 8.47e+01 a.1.1.1 85673 2a7oA 112 8.73e+01 1zk8A 183 8.80e+01 1ve0A 134 8.86e+01 2d29A 387 8.97e+01