# TARGET T0353 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0353.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 4.37753 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.283 0.003 0.001 0.001 0.065 0.648 2 Q 0.893 0.003 0.001 0.001 0.012 0.092 3 I 0.977 0.001 0.001 0.001 0.004 0.018 4 H 0.990 0.001 0.001 0.001 0.002 0.007 5 V 0.990 0.001 0.001 0.001 0.002 0.007 6 Y 0.974 0.001 0.001 0.001 0.008 0.018 7 D 0.880 0.001 0.001 0.001 0.042 0.076 8 T 0.720 0.001 0.002 0.002 0.121 0.154 9 Y 0.795 0.004 0.003 0.003 0.098 0.097 10 V 0.943 0.006 0.002 0.003 0.016 0.030 11 K 0.948 0.010 0.001 0.002 0.015 0.025 12 A 0.802 0.010 0.002 0.002 0.171 0.013 13 K 0.226 0.003 0.007 0.002 0.747 0.015 14 D 0.024 0.001 0.008 0.005 0.950 0.012 15 G 0.091 0.006 0.004 0.002 0.877 0.020 16 H 0.742 0.015 0.001 0.001 0.072 0.169 17 V 0.973 0.007 0.001 0.001 0.006 0.014 18 M 0.977 0.001 0.001 0.001 0.007 0.015 19 H 0.983 0.001 0.001 0.001 0.004 0.012 20 F 0.943 0.001 0.001 0.001 0.016 0.040 21 D 0.830 0.001 0.001 0.001 0.043 0.124 22 V 0.920 0.002 0.001 0.001 0.022 0.054 23 F 0.942 0.003 0.001 0.002 0.017 0.036 24 T 0.940 0.005 0.002 0.004 0.013 0.037 25 D 0.763 0.006 0.002 0.007 0.088 0.134 26 V 0.222 0.006 0.043 0.043 0.456 0.231 27 R 0.073 0.010 0.062 0.047 0.619 0.189 28 D 0.020 0.010 0.041 0.105 0.612 0.211 29 D 0.005 0.002 0.037 0.691 0.165 0.100 30 K 0.002 0.001 0.009 0.961 0.016 0.010 31 K 0.003 0.001 0.007 0.976 0.008 0.005 32 A 0.003 0.001 0.002 0.986 0.003 0.005 33 I 0.003 0.001 0.002 0.991 0.002 0.002 34 E 0.002 0.001 0.002 0.991 0.002 0.002 35 F 0.001 0.001 0.002 0.992 0.002 0.003 36 A 0.001 0.001 0.001 0.995 0.001 0.002 37 K 0.001 0.001 0.003 0.992 0.002 0.002 38 Q 0.001 0.001 0.004 0.988 0.005 0.003 39 W 0.001 0.001 0.004 0.980 0.007 0.008 40 L 0.002 0.001 0.011 0.938 0.022 0.026 41 S 0.002 0.001 0.024 0.873 0.047 0.054 42 S 0.004 0.002 0.026 0.750 0.089 0.129 43 I 0.006 0.006 0.031 0.579 0.142 0.237 44 G 0.015 0.007 0.016 0.054 0.299 0.609 45 E 0.044 0.012 0.080 0.092 0.512 0.260 46 E 0.094 0.016 0.070 0.075 0.520 0.224 47 G 0.076 0.007 0.061 0.051 0.561 0.244 48 A 0.124 0.011 0.027 0.021 0.415 0.402 49 T 0.314 0.037 0.020 0.025 0.198 0.405 50 V 0.407 0.080 0.015 0.033 0.151 0.315 51 T 0.331 0.039 0.016 0.039 0.218 0.357 52 S 0.119 0.011 0.097 0.090 0.438 0.245 53 E 0.093 0.007 0.180 0.138 0.440 0.142 54 E 0.095 0.015 0.193 0.177 0.383 0.136 55 C 0.095 0.024 0.124 0.161 0.375 0.221 56 R 0.091 0.016 0.114 0.157 0.299 0.322 57 F 0.148 0.032 0.147 0.195 0.265 0.212 58 C 0.161 0.043 0.101 0.214 0.276 0.206 59 H 0.128 0.020 0.153 0.311 0.217 0.171 60 S 0.062 0.011 0.237 0.288 0.257 0.146 61 Q 0.031 0.008 0.249 0.324 0.258 0.132 62 K 0.026 0.013 0.143 0.221 0.279 0.319 63 A 0.013 0.014 0.022 0.101 0.222 0.628 64 P 0.005 0.005 0.008 0.180 0.117 0.685 65 D 0.001 0.001 0.008 0.969 0.010 0.012 66 E 0.001 0.001 0.005 0.988 0.004 0.002 67 V 0.001 0.001 0.003 0.992 0.003 0.001 68 I 0.001 0.001 0.001 0.996 0.001 0.002 69 E 0.001 0.001 0.001 0.997 0.001 0.001 70 A 0.001 0.001 0.002 0.996 0.001 0.001 71 I 0.001 0.001 0.003 0.991 0.003 0.002 72 K 0.001 0.001 0.004 0.985 0.009 0.002 73 Q 0.002 0.001 0.007 0.947 0.030 0.013 74 N 0.005 0.002 0.010 0.371 0.249 0.363 75 G 0.013 0.002 0.002 0.004 0.224 0.755 76 Y 0.266 0.004 0.002 0.001 0.096 0.631 77 F 0.909 0.002 0.001 0.001 0.025 0.062 78 I 0.981 0.001 0.001 0.001 0.004 0.013 79 Y 0.982 0.001 0.001 0.001 0.002 0.015 80 K 0.958 0.001 0.001 0.001 0.006 0.035 81 M 0.821 0.004 0.001 0.002 0.034 0.139 82 E 0.528 0.007 0.004 0.004 0.144 0.313 83 G 0.154 0.016 0.010 0.008 0.345 0.467 84 C 0.082 0.029 0.004 0.007 0.284 0.594 85 N 0.032 0.006 0.001 0.004 0.125 0.832