# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1th0A 226 1.31e+00 d.3.1.7 106903 1r1dA 247 1.56e+00 c.69.1.29 96813 1y8qA 346 1.96e+00 1udzA 182 2.36e+00 b.51.1.1 99239 1tqhA 247 2.65e+00 c.69.1.29 107225 2d8sA 80 3.27e+00 1t0hB 224 4.02e+00 c.37.1.1 106208 1n9lA 109 5.51e+00 d.110.3.6 85468 1ldjA 760 5.71e+00 a.4.5.34,a.118.17.1,e.40.1.1 73847,73848,73849 1wnyA 186 7.02e+00 1jnuA 104 8.41e+00 d.110.3.6 71762 1rcwA 231 8.99e+00 a.132.1.4 97299 2bv4A 113 9.78e+00 2cqeA 98 1.08e+01 1wojA 214 1.09e+01 1sl8A 191 1.12e+01 1fyxA 149 1.16e+01 1fyvA c.23.2.1 31128 1srb 21 1.32e+01 j.28.1.1 46201 1w85A 368 1.33e+01 1t3lA 337 1.51e+01 b.34.2.1,c.37.1.1 106358,106359 1edn 21 1.54e+01 j.28.1.1 46197 1v8bA 479 1.60e+01 1l0lA 446 1.71e+01 d.185.1.1,d.185.1.1 84482,84483 1nqkA 381 1.77e+01 c.1.16.4 92050 1d1vA 444 1.92e+01 1nseA d.174.1.1 59101 1x4tA 92 1.95e+01 1xreA 217 2.00e+01 1a0i 348 2.08e+01 1a0i b.40.4.6,d.142.2.1 25363,41577 2glzA 153 2.10e+01 1s1hN 36 2.21e+01 i.1.1.1 105166 2cybA 323 2.23e+01 1dxrC 336 2.40e+01 6prcC a.138.1.2 19670 1wk8A 194 2.43e+01 1ed5A 444 2.46e+01 1nseA d.174.1.1 42530 2gs5A 198 2.47e+01 1hr6B 443 2.47e+01 1be3A d.185.1.1,d.185.1.1 61166,61167 1vd4A 62 2.53e+01 2cthA 107 2.55e+01 3cyr a.138.1.1 19652 1juvA 193 2.65e+01 c.71.1.1 90912 2sak 121 2.69e+01 2sak d.15.5.1 37711 2d8qA 70 2.72e+01 1s62A 106 2.82e+01 1u6pA 56 2.92e+01 2acy 98 2.92e+01 2acy d.58.10.1 39298 1h0oA 390 2.98e+01 a.25.1.2 70845 1jj2T 66 3.00e+01 1ffkR g.39.1.6 63105 1s72U 66 3.00e+01 g.39.1.6 105340 2fulA 178 3.09e+01 1d0cA 444 3.13e+01 d.174.1.1 64769 2dtr 226 3.14e+01 1bi0 a.4.5.24,a.76.1.1,b.34.1.2 16193,18399,24450 1ytc 112 3.31e+01 1ycc a.3.1.1 15835 1vqoU 66 3.39e+01 1cot 129 3.43e+01 1ycc a.3.1.1 15899 1otkA 249 3.45e+01 a.25.1.2 93521 2d5xA 141 3.46e+01 1z57A 339 3.48e+01 1oahA 519 3.55e+01 a.138.1.3 86736 2bh4X 134 3.56e+01 1iwhA 141 3.60e+01 a.1.1.2 76882 1w68A 390 3.74e+01 a.25.1.2 109216 1vydA 116 3.76e+01 a.3.1.1 108900 1qo7A 394 3.79e+01 1qo7A c.69.1.11 34697 1w4xA 542 3.89e+01 c.3.1.5,c.3.1.5 109171,109172 1x99A 145 3.89e+01 1m4rA 151 3.92e+01 a.26.1.3 84799 1ppjA 446 3.97e+01 d.185.1.1,d.185.1.1 104252,104253 2mhr 118 4.00e+01 2mhr a.24.4.1 16581 1mmvB 419 4.05e+01 d.174.1.1 91318 2a4hA 126 4.13e+01 2flsA 132 4.15e+01 1ls9A 91 4.23e+01 a.3.1.1 78177 1uzxA 169 4.26e+01 d.20.1.2 100238 1x0rA 249 4.36e+01 1om4A 422 4.42e+01 d.174.1.1 87067 1tit 98 4.47e+01 1tit b.1.1.4 21716 1jidA 128 4.47e+01 d.201.1.1 66735 2c5qA 240 4.62e+01 1r7mA 235 4.64e+01 1nb5I 98 4.78e+01 d.17.1.2 80381 1m3uA 264 4.78e+01 c.1.12.8 84784 2be4A 272 4.88e+01 1z84A 351 4.89e+01 1babA 143 4.97e+01 1abwA a.1.1.2 15235 1v4pA 157 5.05e+01 1xwvA 129 5.07e+01 1jmxA 494 5.21e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1v7oA 165 5.40e+01 d.67.1.2 100480 1ctj 89 5.43e+01 1ctj a.3.1.1 15798 1p2hA 571 5.53e+01 a.138.1.3,c.3.1.4,d.168.1.1 93930,93931,93932 2ffwA 78 5.55e+01 1owtA 66 5.57e+01 d.230.3.1 87493 1z7dA 433 5.65e+01 1jcfA 344 5.66e+01 c.55.1.1,c.55.1.1 62878,62879 2mtaC 147 5.66e+01 2mtaC a.3.1.1 15908 1o9yA 84 5.69e+01 b.139.1.1 92692 2b95A 106 5.73e+01 1brwA 433 5.77e+01 1brwA a.46.2.1,c.27.1.1,d.41.3.1 17764,31628,38626 1lmzA 187 5.99e+01 a.96.1.4 74037 1irdA 141 6.02e+01 a.1.1.2 66286 1qsoA 149 6.04e+01 1qsmA d.108.1.1 40812 2bg1A 494 6.05e+01 1gp1A 198 6.09e+01 1gp1A c.47.1.10 33059 1xwfA 431 6.18e+01 1yd0A 96 6.22e+01 1h6wA 312 6.24e+01 d.231.1.1,b.108.1.1 83059,83060 1u5mA 73 6.25e+01 1wohA 305 6.29e+01 c.42.1.1 109446 1j3mA 129 6.38e+01 d.129.7.1 103836 1sgpI 51 6.52e+01 2ovo g.68.1.1 44678 1j3kA 280 6.53e+01 c.71.1.1 84070 1a6bB 40 6.54e+01 1a6bB g.40.1.1 45172 1cyj 90 6.64e+01 1ctj a.3.1.1 15805 1r0rI 51 6.65e+01 g.68.1.1 96736 1dceB 331 6.66e+01 1dceB a.102.4.3 18872 2fwtA 125 6.85e+01 2b4zA 104 6.94e+01 2cx9A 387 6.95e+01 1e39A 571 7.01e+01 1qjdA a.138.1.3,c.3.1.4,d.168.1.1 19694,30431,42314 1lk2A 274 7.06e+01 b.1.1.2,d.19.1.1 91056,91057 2br9A 234 7.10e+01 1n8yC 608 7.12e+01 c.10.2.5,c.10.2.5,g.3.9.1,g.3.9.1 80314,80315,80316,80317 2f7fA 494 7.16e+01 1v93A 296 7.20e+01 c.1.23.1 100532 1wh0A 134 7.24e+01 2a7oA 112 7.29e+01 1q9iA 571 7.31e+01 a.138.1.3,c.3.1.4,d.168.1.1 96273,96274,96275 1y0pA 571 7.37e+01 1ws9A 387 7.43e+01 1pbyA 489 7.60e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 94417,94418,94419,94420,94421 1nc5A 373 7.61e+01 a.102.1.6 85548 1cqqA 180 7.68e+01 1cqqA b.47.1.4 26422 1kyhA 276 7.69e+01 c.72.1.4 73222 2d29A 387 7.76e+01 1m3qA 317 7.79e+01 a.96.1.3,d.129.1.2 91184,91185 1kssA 571 7.92e+01 a.138.1.3,c.3.1.4,d.168.1.1 72928,72929,72930 1z54A 132 7.98e+01 1weoA 93 8.01e+01 2c1xA 456 8.06e+01 1y9wA 140 8.25e+01 1mg2D 155 8.32e+01 a.3.1.1 79062 1ntyA 311 8.47e+01 a.87.1.1,b.55.1.1 103873,103874 1d4fA 431 8.54e+01 1b3rA c.2.1.4,c.23.12.3 30110,31370 1sq2N 113 8.71e+01 b.1.1.1 105881 1x2iA 75 8.73e+01 1y9kA 157 8.80e+01 2b10B 108 8.99e+01