CreatePredAlphaCost pred_alpha2k alpha11 T0352.t2k.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha04 alpha11 T0352.t04.alpha.rdb 2 alpha alpha_prev sum CreatePredAlphaCost pred_alpha06 alpha11 T0352.t06.alpha.rdb 2 alpha alpha_prev sum SetCost wet6.5 40 near_backbone 5 way_back 5 dry5 50 dry6.5 60 dry8 40 dry12 15 \ phobic_fit 1 \ sidechain 5 \ n_ca_c 5 bad_peptide 10 \ bystroff 5 \ soft_clashes 100 backbone_clashes 2 \ break 250 \ pred_alpha2k 2 \ pred_alpha04 2 \ pred_alpha06 2 \ hbond_geom 5 \ hbond_geom_backbone 10 \ missing_atoms 1