make[1]: Entering directory `/projects/compbio/experiments/protein-predict/casp7/T0352' mkdir -p decoys rm decoys/read-pdb+servers.under cd decoys; shopt -s nullglob ; for x in ../*.ts-submitted* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in *.pdb* ; do echo ReadConformPDB $x >> read-pdb+servers.under ; done cd decoys; shopt -s nullglob ; for x in ../*mer/decoys/*.pdb* ; \ do echo ReadConformPDB $x chain A >> read-pdb+servers.under ; \ y=${x#../} ;\ z=${y/decoys} ;\ a=${z/T0352.} ;\ b=${a%.gz} ;\ c=${b%.pdb} ;\ echo NameConform $c >> read-pdb+servers.under ; \ done cd decoys; shopt -s nullglob ; for x in servers/*.pdb.gz ; do \ echo ReadConformPDB $x >> read-pdb+servers.under ; \ y=${x%.pdb.gz} ; \ z=${y#servers/} ; \ echo NameConform $z >> read-pdb+servers.under ; \ echo SCWRLConform >> read-pdb+servers.under ; \ echo NameConform $z-scwrl >> read-pdb+servers.under ; \ done chgrp protein decoys/read-pdb+servers.under chmod g+w decoys/read-pdb+servers.under rm -f decoys/evaluate.predburial.rdb sed -e s/XXX0000/T0352/ -e s/START_COL/1/ \ -e s/COSTFCN/predburial/ \ -e s/_domain// \ -e s/read-pdb/read-pdb+servers/ \ -e s/REAL_PDB// \ < /projects/compbio/experiments/protein-predict/casp7/starter-directory/evaluate.under \ | nice -2 /cse/grads/jarchie/projects/cvs/karplus/undertaker/undertaker # command:# Seed set to 1173336218 # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/atoms-inputs/ # command:# reading monomeric-50pc.atoms # After reading monomeric-50pc.atoms have 448 chains in training database # Count of chains,residues,atoms: 448,112605,876684 # 109826 residues have no bad marker # 665 residues lack atoms needed to compute omega # 322 residues have cis peptide # number of each bad type: # NON_STANDARD_RESIDUE 6 # HAS_OXT 325 # TOO_MANY_ATOMS 1 # TOO_FEW_ATOMS 523 # HAS_UNKNOWN_ATOMS 2 # HAS_DUPLICATE_ATOMS 0 # CHAIN_BREAK_BEFORE 208 # NON_PLANAR_PEPTIDE 143 # BAD_PEPTIDE 1959 # Note: may sum to more than number of residues, # because one residue may have multiple problems # command:# Reading rotamer library from dunbrack-1332.rot # command:# Prefix for input files set to /projects/compbio/experiments/undertaker/spots/ # command:# ReadAtomType exp-pdb.types Read AtomType exp-pdb with 49 types. # command:# ReadClashTable exp-pdb-2191-2symm.clash # Read ClashTable exp-pdb-2191-2symm checking bonds symmetric at MaxSep 2 # command:# command:CPU_time= 6.15706 sec, elapsed time= 6.25144 sec) # command:# Reading spots from monomeric-50pc-dry-5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-5.hist # created burial cost function dry5 with radius 5 with spots at monomeric-50pc-dry-5.spot # command:# Reading spots from monomeric-50pc-wet-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-wet-6.5.hist # created burial cost function wet6.5 with radius 6.5 with spots at monomeric-50pc-wet-6.5.spot # command:# Reading spots from monomeric-50pc-dry-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-6.5.hist # created burial cost function dry6.5 with radius 6.5 with spots at monomeric-50pc-dry-6.5.spot # command:# Reading spots from monomeric-50pc-generic-6.5.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-generic-6.5.hist # created burial cost function gen6.5 with radius 6.5 with spots at monomeric-50pc-generic-6.5.spot # command:# Reading spots from near-backbone-center.spot # reading histogram from smoothed-near-backbone-2spot.hist # Reading spots from near-backbone-count.spot # created burial cost function near_backbone with radius 9.65 with spots at near-backbone-center.spot counting only near-backbone-count.spot # command:# Reading spots from way-back-center.spot # reading histogram from smoothed-way-back-2spot.hist # Reading spots from way-back-count.spot # created burial cost function way_back with radius 8.9 with spots at way-back-center.spot counting only way-back-count.spot # command:# Reading spots from monomeric-50pc-dry-8.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-8.hist # created burial cost function dry8 with radius 8 with spots at monomeric-50pc-dry-8.spot # command:# Reading spots from monomeric-50pc-dry-10.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-10.hist # created burial cost function dry10 with radius 10 with spots at monomeric-50pc-dry-10.spot # command:# Reading spots from monomeric-50pc-dry-12.spot Read prototypes from /projects/compbio/experiments/undertaker/spots/../normalize_prototypes/prototypes # reading histogram from smoothed-monomeric-50pc-dry-12.hist # created burial cost function dry12 with radius 12 with spots at monomeric-50pc-dry-12.spot # command:# reading histogram from dunbrack-2191-alpha.hist # created alpha cost function alpha with offset 0 and 360 bins # command:# reading histogram from dunbrack-2191-alpha-1.hist # created alpha cost function alpha_prev with offset -1 and 360 bins # command:# Prefix for input files set to /projects/compbio/lib/alphabet/ # command:# Read 3 alphabets from alpha.alphabet # command:CPU_time= 6.23705 sec, elapsed time= 6.34479 sec) # command:# Prefix for input files set to # command:# Making conformation for sequence T0352 numbered 1 through 117 Created new target T0352 from T0352.a2m # command:# command:# No conformations to remove in PopConform # command:# cleared Id set # command:# command:Error: ReadConformPDBidsNo chains found for ID set: # command:# Saving current conformation as real # command:# Prefix for output files set to decoys/ # command:# SetRealCost created real_cost = # ( 50 * real_hbond + 50 * real_hbond_u + 50 * decoy_hbond + 50 * decoy_hbond_u + 10 * real_NO_hbond + 10 * real_NO_hbond_u + 10 * decoy_NO_hbond + 10 * decoy_NO_hbond_u + 10 * knot + 200 * clens + 0 * rmsd + 35 * log_rmsd + 0 * rmsd_ca + 30 * log_rmsd_ca + 1 * GDT + 1 * smooth_GDT + 0.2 * missing_atoms ) # command:# SetCost created cost = # ) # command:# reading script from file predburial.costfcn # Read 5 alphabets from /projects/compbio/lib/alphabet/two-spot-burial.alphabet # created predicted BurialPredCostFcn pred_burial2k # created predicted BurialPredCostFcn pred_burial2k_simple # created predicted BurialPredCostFcn pred_burial04 # created predicted BurialPredCostFcn pred_burial04_simple # created predicted BurialPredCostFcn pred_burial06 # created predicted BurialPredCostFcn pred_burial06_simple # reading predictions from T0352.t2k.alpha.rdb # created predicted alpha cost function pred_alpha2k with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # reading predictions from T0352.t04.alpha.rdb # created predicted alpha cost function pred_alpha04 with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # reading predictions from T0352.t06.alpha.rdb # created predicted alpha cost function pred_alpha06 with 360 bins smoothing outer_iter=2 inner_iter=1 width=7 # SetCost created cost = # ( 15 * wet6.5(6.5, /log(length)) + 5 * near_backbone(9.65) + 5 * way_back(8.9) + 15 * dry5(5) + 20 * dry6.5(6.5) + 15 * dry8(8) + 5 * dry12(12) + 5 * pred_burial2k_simple(9.65) + 5 * pred_burial2k(9.65) + 5 * pred_burial04_simple(9.65) + 5 * pred_burial04(9.65) + 5 * pred_burial06_simple(9.65) + 5 * pred_burial06(9.65) + 2 * phobic_fit + 10 * n_ca_c + 20 * bad_peptide + 5 * sidechain + 8 * bystroff + 20 * soft_clashes + 2 * backbone_clashes + 50 * break + 3 * pred_alpha2k + 4 * pred_alpha04 + 5 * pred_alpha06 + 5 * hbond_geom + 10 * hbond_geom_backbone + 50 * hbond_geom_beta + 100 * hbond_geom_beta_pair + 1 * missing_atoms ) # command:CPU_time= 8.82966 sec, elapsed time= 9.72367 sec) # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file model1.ts-submitted looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -14.7436 # GDT_score(maxd=8,maxw=2.9)= -13.0119 # GDT_score(maxd=8,maxw=3.2)= -12.6735 # GDT_score(maxd=8,maxw=3.5)= -12.393 # GDT_score(maxd=10,maxw=3.8)= -13.789 # GDT_score(maxd=10,maxw=4)= -13.5696 # GDT_score(maxd=10,maxw=4.2)= -13.3409 # GDT_score(maxd=12,maxw=4.3)= -14.6284 # GDT_score(maxd=12,maxw=4.5)= -14.3608 # GDT_score(maxd=12,maxw=4.7)= -14.1001 # GDT_score(maxd=14,maxw=5.2)= -14.5841 # GDT_score(maxd=14,maxw=5.5)= -14.1192 # command:# Prefix for output files set to # command:# command:# Prefix for output files set to decoys/ # command:# request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1489203334.pdb -s /var/tmp/to_scwrl_1489203334.seq -o /var/tmp/from_scwrl_1489203334.pdb > /var/tmp/scwrl_1489203334.log Error: can't open any of /var/tmp/from_scwrl_1489203334.pdb or /var/tmp/from_scwrl_1489203334_b.pdb or /var/tmp/from_scwrl_1489203334_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model1-scwrl # command:# ReadConformPDB reading from PDB file model2.ts-submitted looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -13.6752 # GDT_score(maxd=8,maxw=2.9)= -12.7565 # GDT_score(maxd=8,maxw=3.2)= -12.442 # GDT_score(maxd=8,maxw=3.5)= -12.1814 # GDT_score(maxd=10,maxw=3.8)= -13.2439 # GDT_score(maxd=10,maxw=4)= -13.0292 # GDT_score(maxd=10,maxw=4.2)= -12.7761 # GDT_score(maxd=12,maxw=4.3)= -14.0762 # GDT_score(maxd=12,maxw=4.5)= -13.7924 # GDT_score(maxd=12,maxw=4.7)= -13.5328 # GDT_score(maxd=14,maxw=5.2)= -14.1535 # GDT_score(maxd=14,maxw=5.5)= -13.7326 # command:# request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_479963630.pdb -s /var/tmp/to_scwrl_479963630.seq -o /var/tmp/from_scwrl_479963630.pdb > /var/tmp/scwrl_479963630.log Error: can't open any of /var/tmp/from_scwrl_479963630.pdb or /var/tmp/from_scwrl_479963630_b.pdb or /var/tmp/from_scwrl_479963630_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model2-scwrl # command:# ReadConformPDB reading from PDB file model3.ts-submitted looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -13.4615 # GDT_score(maxd=8,maxw=2.9)= -12.1586 # GDT_score(maxd=8,maxw=3.2)= -11.9001 # GDT_score(maxd=8,maxw=3.5)= -11.6389 # GDT_score(maxd=10,maxw=3.8)= -12.8871 # GDT_score(maxd=10,maxw=4)= -12.6701 # GDT_score(maxd=10,maxw=4.2)= -12.4737 # GDT_score(maxd=12,maxw=4.3)= -13.7548 # GDT_score(maxd=12,maxw=4.5)= -13.5234 # GDT_score(maxd=12,maxw=4.7)= -13.3116 # GDT_score(maxd=14,maxw=5.2)= -14.0045 # GDT_score(maxd=14,maxw=5.5)= -13.6298 # command:# request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_534575084.pdb -s /var/tmp/to_scwrl_534575084.seq -o /var/tmp/from_scwrl_534575084.pdb > /var/tmp/scwrl_534575084.log Error: can't open any of /var/tmp/from_scwrl_534575084.pdb or /var/tmp/from_scwrl_534575084_b.pdb or /var/tmp/from_scwrl_534575084_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model3-scwrl # command:# ReadConformPDB reading from PDB file model4.ts-submitted looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -14.5299 # GDT_score(maxd=8,maxw=2.9)= -12.8716 # GDT_score(maxd=8,maxw=3.2)= -12.5088 # GDT_score(maxd=8,maxw=3.5)= -12.1692 # GDT_score(maxd=10,maxw=3.8)= -13.6732 # GDT_score(maxd=10,maxw=4)= -13.4169 # GDT_score(maxd=10,maxw=4.2)= -13.185 # GDT_score(maxd=12,maxw=4.3)= -14.6572 # GDT_score(maxd=12,maxw=4.5)= -14.3857 # GDT_score(maxd=12,maxw=4.7)= -14.1259 # GDT_score(maxd=14,maxw=5.2)= -14.9597 # GDT_score(maxd=14,maxw=5.5)= -14.5196 # command:# request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1354185941.pdb -s /var/tmp/to_scwrl_1354185941.seq -o /var/tmp/from_scwrl_1354185941.pdb > /var/tmp/scwrl_1354185941.log Error: can't open any of /var/tmp/from_scwrl_1354185941.pdb or /var/tmp/from_scwrl_1354185941_b.pdb or /var/tmp/from_scwrl_1354185941_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model4-scwrl # command:# ReadConformPDB reading from PDB file model5.ts-submitted looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -15.1709 # GDT_score(maxd=8,maxw=2.9)= -13.6226 # GDT_score(maxd=8,maxw=3.2)= -13.2041 # GDT_score(maxd=8,maxw=3.5)= -12.8049 # GDT_score(maxd=10,maxw=3.8)= -14.2436 # GDT_score(maxd=10,maxw=4)= -13.9587 # GDT_score(maxd=10,maxw=4.2)= -13.701 # GDT_score(maxd=12,maxw=4.3)= -15.04 # GDT_score(maxd=12,maxw=4.5)= -14.7514 # GDT_score(maxd=12,maxw=4.7)= -14.4874 # GDT_score(maxd=14,maxw=5.2)= -15.0551 # GDT_score(maxd=14,maxw=5.5)= -14.6535 # command:# request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_187439812.pdb -s /var/tmp/to_scwrl_187439812.seq -o /var/tmp/from_scwrl_187439812.pdb > /var/tmp/scwrl_187439812.log Error: can't open any of /var/tmp/from_scwrl_187439812.pdb or /var/tmp/from_scwrl_187439812_b.pdb or /var/tmp/from_scwrl_187439812_a.pdb Error: no new SCWRL conformation added # command:# naming current conformation model5-scwrl # command:# Prefix for input files set to decoys/ # command:# ReadConformPDB reading from PDB file T0352.try1-opt2.pdb looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # command:# fraction of real conformation used = 1 # GDT_score = -15.3846 # GDT_score(maxd=8,maxw=2.9)= -13.6543 # GDT_score(maxd=8,maxw=3.2)= -13.2327 # GDT_score(maxd=8,maxw=3.5)= -12.8311 # GDT_score(maxd=10,maxw=3.8)= -14.3122 # GDT_score(maxd=10,maxw=4)= -14.024 # GDT_score(maxd=10,maxw=4.2)= -13.7632 # GDT_score(maxd=12,maxw=4.3)= -15.1044 # GDT_score(maxd=12,maxw=4.5)= -14.813 # GDT_score(maxd=12,maxw=4.7)= -14.5463 # GDT_score(maxd=14,maxw=5.2)= -15.1083 # GDT_score(maxd=14,maxw=5.5)= -14.7038 # command:# Prefix for output files set to # command:# command:# Prefix for output files set to decoys/ # command:# Prefix for input files set to # command:# ReadConformPDB reading from PDB file T0352.undertaker-align.pdb looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # command:# naming current conformation align1 # command:# fraction of real conformation used = 0.478632 # GDT_score = -11.9658 # GDT_score(maxd=8,maxw=2.9)= -11.5075 # GDT_score(maxd=8,maxw=3.2)= -10.9896 # GDT_score(maxd=8,maxw=3.5)= -10.5604 # GDT_score(maxd=10,maxw=3.8)= -11.8258 # GDT_score(maxd=10,maxw=4)= -11.5337 # GDT_score(maxd=10,maxw=4.2)= -11.2693 # GDT_score(maxd=12,maxw=4.3)= -12.8654 # GDT_score(maxd=12,maxw=4.5)= -12.5595 # GDT_score(maxd=12,maxw=4.7)= -12.2796 # GDT_score(maxd=14,maxw=5.2)= -13.1376 # GDT_score(maxd=14,maxw=5.5)= -12.7008 # command:# ReadConformPDB reading from PDB file T0352.undertaker-align.pdb looking for model 2 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # command:# naming current conformation align2 # command:# fraction of real conformation used = 0.495726 # GDT_score = -12.1795 # GDT_score(maxd=8,maxw=2.9)= -11.4866 # GDT_score(maxd=8,maxw=3.2)= -11.0473 # GDT_score(maxd=8,maxw=3.5)= -10.6132 # GDT_score(maxd=10,maxw=3.8)= -11.7419 # GDT_score(maxd=10,maxw=4)= -11.454 # GDT_score(maxd=10,maxw=4.2)= -11.1935 # GDT_score(maxd=12,maxw=4.3)= -12.3463 # GDT_score(maxd=12,maxw=4.5)= -12.0635 # GDT_score(maxd=12,maxw=4.7)= -11.8047 # GDT_score(maxd=14,maxw=5.2)= -12.2742 # GDT_score(maxd=14,maxw=5.5)= -11.8844 # command:# ReadConformPDB reading from PDB file T0352.undertaker-align.pdb looking for model 3 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # command:# naming current conformation align3 # command:# ReadConformPDB reading from PDB file T0352.undertaker-align.pdb looking for model 4 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # command:# naming current conformation align4 # command:# ReadConformPDB reading from PDB file T0352.undertaker-align.pdb looking for model 5 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # command:# naming current conformation align5 # command:# Prefix for input files set to decoys/ # command:# reading script from file read-pdb+servers.under # ReadConformPDB reading from PDB file ../model1.ts-submitted looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model2.ts-submitted looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model3.ts-submitted looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model4.ts-submitted looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file ../model5.ts-submitted looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try1-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try1-opt1.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try1-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try1-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try1-opt2.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try1-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try10-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try10-opt1.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try10-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try10-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try10-opt2.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try10-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try11-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try11-opt1.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try11-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try11-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try11-opt2.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try11-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try2-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try2-opt1.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try2-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try2-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try2-opt2.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try2-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try3-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try3-opt1.pdb.gz looking for model 1 # Found a chain break before 86 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try3-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try3-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try3-opt2.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try3-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try4-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try4-opt1.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try4-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try4-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try4-opt2.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try4-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try5-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try5-opt1.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try5-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try5-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try5-opt2.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try5-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try6-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try6-opt1.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try6-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try6-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try6-opt2.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try6-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try7-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try7-opt1.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try7-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try7-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try7-opt2.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try7-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try8-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try8-opt1.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try8-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try8-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try8-opt2.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try8-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try9-opt1-scwrl.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try9-opt1.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try9-opt2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try9-opt2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try9-opt2.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file T0352.try9-opt2.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-5-3.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file chimera-M1-S106-10+HIS.pdb.gz looking for model 1 # Found a chain break before 109 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file try5-tweak2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file try5-tweak2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file try5-tweak2.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file try5-tweak3.gromacs0.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file try5-tweak3.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file try5-tweak3.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file try9-tweak1.gromacs0.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file try9-tweak1.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file try9-tweak1.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file try9-tweak2.gromacs0.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file try9-tweak2.gromacs0.repack-nonPC.pdb.gz looking for model 1 # Found a chain break before 105 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file try9-tweak2.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_747177896.pdb -s /var/tmp/to_scwrl_747177896.seq -o /var/tmp/from_scwrl_747177896.pdb > /var/tmp/scwrl_747177896.log Error: can't open any of /var/tmp/from_scwrl_747177896.pdb or /var/tmp/from_scwrl_747177896_b.pdb or /var/tmp/from_scwrl_747177896_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1976118720.pdb -s /var/tmp/to_scwrl_1976118720.seq -o /var/tmp/from_scwrl_1976118720.pdb > /var/tmp/scwrl_1976118720.log Error: can't open any of /var/tmp/from_scwrl_1976118720.pdb or /var/tmp/from_scwrl_1976118720_b.pdb or /var/tmp/from_scwrl_1976118720_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1974375664.pdb -s /var/tmp/to_scwrl_1974375664.seq -o /var/tmp/from_scwrl_1974375664.pdb > /var/tmp/scwrl_1974375664.log Error: can't open any of /var/tmp/from_scwrl_1974375664.pdb or /var/tmp/from_scwrl_1974375664_b.pdb or /var/tmp/from_scwrl_1974375664_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_POPULUS_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1159593960.pdb -s /var/tmp/to_scwrl_1159593960.seq -o /var/tmp/from_scwrl_1159593960.pdb > /var/tmp/scwrl_1159593960.log Error: can't open any of /var/tmp/from_scwrl_1159593960.pdb or /var/tmp/from_scwrl_1159593960_b.pdb or /var/tmp/from_scwrl_1159593960_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_POPULUS_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_POPULUS_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_448801914.pdb -s /var/tmp/to_scwrl_448801914.seq -o /var/tmp/from_scwrl_448801914.pdb > /var/tmp/scwrl_448801914.log Error: can't open any of /var/tmp/from_scwrl_448801914.pdb or /var/tmp/from_scwrl_448801914_b.pdb or /var/tmp/from_scwrl_448801914_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_POPULUS_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_845975220.pdb -s /var/tmp/to_scwrl_845975220.seq -o /var/tmp/from_scwrl_845975220.pdb > /var/tmp/scwrl_845975220.log Error: can't open any of /var/tmp/from_scwrl_845975220.pdb or /var/tmp/from_scwrl_845975220_b.pdb or /var/tmp/from_scwrl_845975220_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1893094554.pdb -s /var/tmp/to_scwrl_1893094554.seq -o /var/tmp/from_scwrl_1893094554.pdb > /var/tmp/scwrl_1893094554.log Error: can't open any of /var/tmp/from_scwrl_1893094554.pdb or /var/tmp/from_scwrl_1893094554_b.pdb or /var/tmp/from_scwrl_1893094554_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1401313940.pdb -s /var/tmp/to_scwrl_1401313940.seq -o /var/tmp/from_scwrl_1401313940.pdb > /var/tmp/scwrl_1401313940.log Error: can't open any of /var/tmp/from_scwrl_1401313940.pdb or /var/tmp/from_scwrl_1401313940_b.pdb or /var/tmp/from_scwrl_1401313940_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1567225654.pdb -s /var/tmp/to_scwrl_1567225654.seq -o /var/tmp/from_scwrl_1567225654.pdb > /var/tmp/scwrl_1567225654.log Error: can't open any of /var/tmp/from_scwrl_1567225654.pdb or /var/tmp/from_scwrl_1567225654_b.pdb or /var/tmp/from_scwrl_1567225654_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS4-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_RECOM_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_RECOM_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_77458124.pdb -s /var/tmp/to_scwrl_77458124.seq -o /var/tmp/from_scwrl_77458124.pdb > /var/tmp/scwrl_77458124.log Error: can't open any of /var/tmp/from_scwrl_77458124.pdb or /var/tmp/from_scwrl_77458124_b.pdb or /var/tmp/from_scwrl_77458124_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_RECOM_TS5-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_798769947.pdb -s /var/tmp/to_scwrl_798769947.seq -o /var/tmp/from_scwrl_798769947.pdb > /var/tmp/scwrl_798769947.log Error: can't open any of /var/tmp/from_scwrl_798769947.pdb or /var/tmp/from_scwrl_798769947_b.pdb or /var/tmp/from_scwrl_798769947_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS1-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_221748385.pdb -s /var/tmp/to_scwrl_221748385.seq -o /var/tmp/from_scwrl_221748385.pdb > /var/tmp/scwrl_221748385.log Error: can't open any of /var/tmp/from_scwrl_221748385.pdb or /var/tmp/from_scwrl_221748385_b.pdb or /var/tmp/from_scwrl_221748385_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS2-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS3.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation 3D-JIGSAW_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_370217747.pdb -s /var/tmp/to_scwrl_370217747.seq -o /var/tmp/from_scwrl_370217747.pdb > /var/tmp/scwrl_370217747.log Error: can't open any of /var/tmp/from_scwrl_370217747.pdb or /var/tmp/from_scwrl_370217747_b.pdb or /var/tmp/from_scwrl_370217747_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS3-scwrl # ReadConformPDB reading from PDB file servers/3D-JIGSAW_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation 3D-JIGSAW_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_335366058.pdb -s /var/tmp/to_scwrl_335366058.seq -o /var/tmp/from_scwrl_335366058.pdb > /var/tmp/scwrl_335366058.log Error: can't open any of /var/tmp/from_scwrl_335366058.pdb or /var/tmp/from_scwrl_335366058_b.pdb or /var/tmp/from_scwrl_335366058_a.pdb Error: no new SCWRL conformation added # naming current conformation 3D-JIGSAW_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_123807887.pdb -s /var/tmp/to_scwrl_123807887.seq -o /var/tmp/from_scwrl_123807887.pdb > /var/tmp/scwrl_123807887.log Error: can't open any of /var/tmp/from_scwrl_123807887.pdb or /var/tmp/from_scwrl_123807887_b.pdb or /var/tmp/from_scwrl_123807887_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS2.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_147826270.pdb -s /var/tmp/to_scwrl_147826270.seq -o /var/tmp/from_scwrl_147826270.pdb > /var/tmp/scwrl_147826270.log Error: can't open any of /var/tmp/from_scwrl_147826270.pdb or /var/tmp/from_scwrl_147826270_b.pdb or /var/tmp/from_scwrl_147826270_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS3.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1486583594.pdb -s /var/tmp/to_scwrl_1486583594.seq -o /var/tmp/from_scwrl_1486583594.pdb > /var/tmp/scwrl_1486583594.log Error: can't open any of /var/tmp/from_scwrl_1486583594.pdb or /var/tmp/from_scwrl_1486583594_b.pdb or /var/tmp/from_scwrl_1486583594_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS4.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1237703746.pdb -s /var/tmp/to_scwrl_1237703746.seq -o /var/tmp/from_scwrl_1237703746.pdb > /var/tmp/scwrl_1237703746.log Error: can't open any of /var/tmp/from_scwrl_1237703746.pdb or /var/tmp/from_scwrl_1237703746_b.pdb or /var/tmp/from_scwrl_1237703746_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/3Dpro_TS5.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation 3Dpro_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1495904561.pdb -s /var/tmp/to_scwrl_1495904561.seq -o /var/tmp/from_scwrl_1495904561.pdb > /var/tmp/scwrl_1495904561.log Error: can't open any of /var/tmp/from_scwrl_1495904561.pdb or /var/tmp/from_scwrl_1495904561_b.pdb or /var/tmp/from_scwrl_1495904561_a.pdb Error: no new SCWRL conformation added # naming current conformation 3Dpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1860312435.pdb -s /var/tmp/to_scwrl_1860312435.seq -o /var/tmp/from_scwrl_1860312435.pdb > /var/tmp/scwrl_1860312435.log Error: can't open any of /var/tmp/from_scwrl_1860312435.pdb or /var/tmp/from_scwrl_1860312435_b.pdb or /var/tmp/from_scwrl_1860312435_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS2.pdb.gz looking for model 1 # Found a chain break before 69 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1055658163.pdb -s /var/tmp/to_scwrl_1055658163.seq -o /var/tmp/from_scwrl_1055658163.pdb > /var/tmp/scwrl_1055658163.log Error: can't open any of /var/tmp/from_scwrl_1055658163.pdb or /var/tmp/from_scwrl_1055658163_b.pdb or /var/tmp/from_scwrl_1055658163_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS3.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1179881384.pdb -s /var/tmp/to_scwrl_1179881384.seq -o /var/tmp/from_scwrl_1179881384.pdb > /var/tmp/scwrl_1179881384.log Error: can't open any of /var/tmp/from_scwrl_1179881384.pdb or /var/tmp/from_scwrl_1179881384_b.pdb or /var/tmp/from_scwrl_1179881384_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS4.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_195490368.pdb -s /var/tmp/to_scwrl_195490368.seq -o /var/tmp/from_scwrl_195490368.pdb > /var/tmp/scwrl_195490368.log Error: can't open any of /var/tmp/from_scwrl_195490368.pdb or /var/tmp/from_scwrl_195490368_b.pdb or /var/tmp/from_scwrl_195490368_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/ABIpro_TS5.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation ABIpro_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1043473614.pdb -s /var/tmp/to_scwrl_1043473614.seq -o /var/tmp/from_scwrl_1043473614.pdb > /var/tmp/scwrl_1043473614.log Error: can't open any of /var/tmp/from_scwrl_1043473614.pdb or /var/tmp/from_scwrl_1043473614_b.pdb or /var/tmp/from_scwrl_1043473614_a.pdb Error: no new SCWRL conformation added # naming current conformation ABIpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/BayesHH_TS1.pdb.gz looking for model 1 # Found a chain break before 94 # copying to AlignedFragments data structure # naming current conformation BayesHH_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1385395400.pdb -s /var/tmp/to_scwrl_1385395400.seq -o /var/tmp/from_scwrl_1385395400.pdb > /var/tmp/scwrl_1385395400.log Error: can't open any of /var/tmp/from_scwrl_1385395400.pdb or /var/tmp/from_scwrl_1385395400_b.pdb or /var/tmp/from_scwrl_1385395400_a.pdb Error: no new SCWRL conformation added # naming current conformation BayesHH_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS1.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_983213176.pdb -s /var/tmp/to_scwrl_983213176.seq -o /var/tmp/from_scwrl_983213176.pdb > /var/tmp/scwrl_983213176.log Error: can't open any of /var/tmp/from_scwrl_983213176.pdb or /var/tmp/from_scwrl_983213176_b.pdb or /var/tmp/from_scwrl_983213176_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS2.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_385193301.pdb -s /var/tmp/to_scwrl_385193301.seq -o /var/tmp/from_scwrl_385193301.pdb > /var/tmp/scwrl_385193301.log Error: can't open any of /var/tmp/from_scwrl_385193301.pdb or /var/tmp/from_scwrl_385193301_b.pdb or /var/tmp/from_scwrl_385193301_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS3.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1865359031.pdb -s /var/tmp/to_scwrl_1865359031.seq -o /var/tmp/from_scwrl_1865359031.pdb > /var/tmp/scwrl_1865359031.log Error: can't open any of /var/tmp/from_scwrl_1865359031.pdb or /var/tmp/from_scwrl_1865359031_b.pdb or /var/tmp/from_scwrl_1865359031_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS4.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1517788259.pdb -s /var/tmp/to_scwrl_1517788259.seq -o /var/tmp/from_scwrl_1517788259.pdb > /var/tmp/scwrl_1517788259.log Error: can't open any of /var/tmp/from_scwrl_1517788259.pdb or /var/tmp/from_scwrl_1517788259_b.pdb or /var/tmp/from_scwrl_1517788259_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/Bilab-ENABLE_TS5.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation Bilab-ENABLE_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1739379242.pdb -s /var/tmp/to_scwrl_1739379242.seq -o /var/tmp/from_scwrl_1739379242.pdb > /var/tmp/scwrl_1739379242.log Error: can't open any of /var/tmp/from_scwrl_1739379242.pdb or /var/tmp/from_scwrl_1739379242_b.pdb or /var/tmp/from_scwrl_1739379242_a.pdb Error: no new SCWRL conformation added # naming current conformation Bilab-ENABLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS1.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_2052798843.pdb -s /var/tmp/to_scwrl_2052798843.seq -o /var/tmp/from_scwrl_2052798843.pdb > /var/tmp/scwrl_2052798843.log Error: can't open any of /var/tmp/from_scwrl_2052798843.pdb or /var/tmp/from_scwrl_2052798843_b.pdb or /var/tmp/from_scwrl_2052798843_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS1-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_117482508.pdb -s /var/tmp/to_scwrl_117482508.seq -o /var/tmp/from_scwrl_117482508.pdb > /var/tmp/scwrl_117482508.log Error: can't open any of /var/tmp/from_scwrl_117482508.pdb or /var/tmp/from_scwrl_117482508_b.pdb or /var/tmp/from_scwrl_117482508_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS2-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1568014315.pdb -s /var/tmp/to_scwrl_1568014315.seq -o /var/tmp/from_scwrl_1568014315.pdb > /var/tmp/scwrl_1568014315.log Error: can't open any of /var/tmp/from_scwrl_1568014315.pdb or /var/tmp/from_scwrl_1568014315_b.pdb or /var/tmp/from_scwrl_1568014315_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS3-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CIRCLE_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1879690861.pdb -s /var/tmp/to_scwrl_1879690861.seq -o /var/tmp/from_scwrl_1879690861.pdb > /var/tmp/scwrl_1879690861.log Error: can't open any of /var/tmp/from_scwrl_1879690861.pdb or /var/tmp/from_scwrl_1879690861_b.pdb or /var/tmp/from_scwrl_1879690861_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS4-scwrl # ReadConformPDB reading from PDB file servers/CIRCLE_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation CIRCLE_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1277076468.pdb -s /var/tmp/to_scwrl_1277076468.seq -o /var/tmp/from_scwrl_1277076468.pdb > /var/tmp/scwrl_1277076468.log Error: can't open any of /var/tmp/from_scwrl_1277076468.pdb or /var/tmp/from_scwrl_1277076468_b.pdb or /var/tmp/from_scwrl_1277076468_a.pdb Error: no new SCWRL conformation added # naming current conformation CIRCLE_TS5-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_2016816229.pdb -s /var/tmp/to_scwrl_2016816229.seq -o /var/tmp/from_scwrl_2016816229.pdb > /var/tmp/scwrl_2016816229.log Error: can't open any of /var/tmp/from_scwrl_2016816229.pdb or /var/tmp/from_scwrl_2016816229_b.pdb or /var/tmp/from_scwrl_2016816229_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS1-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_578182434.pdb -s /var/tmp/to_scwrl_578182434.seq -o /var/tmp/from_scwrl_578182434.pdb > /var/tmp/scwrl_578182434.log Error: can't open any of /var/tmp/from_scwrl_578182434.pdb or /var/tmp/from_scwrl_578182434_b.pdb or /var/tmp/from_scwrl_578182434_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS2-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation CaspIta-FOX_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1022687377.pdb -s /var/tmp/to_scwrl_1022687377.seq -o /var/tmp/from_scwrl_1022687377.pdb > /var/tmp/scwrl_1022687377.log Error: can't open any of /var/tmp/from_scwrl_1022687377.pdb or /var/tmp/from_scwrl_1022687377_b.pdb or /var/tmp/from_scwrl_1022687377_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS3-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1270646523.pdb -s /var/tmp/to_scwrl_1270646523.seq -o /var/tmp/from_scwrl_1270646523.pdb > /var/tmp/scwrl_1270646523.log Error: can't open any of /var/tmp/from_scwrl_1270646523.pdb or /var/tmp/from_scwrl_1270646523_b.pdb or /var/tmp/from_scwrl_1270646523_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS4-scwrl # ReadConformPDB reading from PDB file servers/CaspIta-FOX_TS5.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation CaspIta-FOX_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_2145408089.pdb -s /var/tmp/to_scwrl_2145408089.seq -o /var/tmp/from_scwrl_2145408089.pdb > /var/tmp/scwrl_2145408089.log Error: can't open any of /var/tmp/from_scwrl_2145408089.pdb or /var/tmp/from_scwrl_2145408089_b.pdb or /var/tmp/from_scwrl_2145408089_a.pdb Error: no new SCWRL conformation added # naming current conformation CaspIta-FOX_TS5-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Distill_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1100145500.pdb -s /var/tmp/to_scwrl_1100145500.seq -o /var/tmp/from_scwrl_1100145500.pdb > /var/tmp/scwrl_1100145500.log Error: can't open any of /var/tmp/from_scwrl_1100145500.pdb or /var/tmp/from_scwrl_1100145500_b.pdb or /var/tmp/from_scwrl_1100145500_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS1-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Distill_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_2069416470.pdb -s /var/tmp/to_scwrl_2069416470.seq -o /var/tmp/from_scwrl_2069416470.pdb > /var/tmp/scwrl_2069416470.log Error: can't open any of /var/tmp/from_scwrl_2069416470.pdb or /var/tmp/from_scwrl_2069416470_b.pdb or /var/tmp/from_scwrl_2069416470_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS2-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Distill_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_219672827.pdb -s /var/tmp/to_scwrl_219672827.seq -o /var/tmp/from_scwrl_219672827.pdb > /var/tmp/scwrl_219672827.log Error: can't open any of /var/tmp/from_scwrl_219672827.pdb or /var/tmp/from_scwrl_219672827_b.pdb or /var/tmp/from_scwrl_219672827_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS3-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Distill_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1470363247.pdb -s /var/tmp/to_scwrl_1470363247.seq -o /var/tmp/from_scwrl_1470363247.pdb > /var/tmp/scwrl_1470363247.log Error: can't open any of /var/tmp/from_scwrl_1470363247.pdb or /var/tmp/from_scwrl_1470363247_b.pdb or /var/tmp/from_scwrl_1470363247_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS4-scwrl # ReadConformPDB reading from PDB file servers/Distill_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Distill_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_257298882.pdb -s /var/tmp/to_scwrl_257298882.seq -o /var/tmp/from_scwrl_257298882.pdb > /var/tmp/scwrl_257298882.log Error: can't open any of /var/tmp/from_scwrl_257298882.pdb or /var/tmp/from_scwrl_257298882_b.pdb or /var/tmp/from_scwrl_257298882_a.pdb Error: no new SCWRL conformation added # naming current conformation Distill_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FAMSD_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_343480715.pdb -s /var/tmp/to_scwrl_343480715.seq -o /var/tmp/from_scwrl_343480715.pdb > /var/tmp/scwrl_343480715.log Error: can't open any of /var/tmp/from_scwrl_343480715.pdb or /var/tmp/from_scwrl_343480715_b.pdb or /var/tmp/from_scwrl_343480715_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FAMSD_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1618189518.pdb -s /var/tmp/to_scwrl_1618189518.seq -o /var/tmp/from_scwrl_1618189518.pdb > /var/tmp/scwrl_1618189518.log Error: can't open any of /var/tmp/from_scwrl_1618189518.pdb or /var/tmp/from_scwrl_1618189518_b.pdb or /var/tmp/from_scwrl_1618189518_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS3.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1743882476.pdb -s /var/tmp/to_scwrl_1743882476.seq -o /var/tmp/from_scwrl_1743882476.pdb > /var/tmp/scwrl_1743882476.log Error: can't open any of /var/tmp/from_scwrl_1743882476.pdb or /var/tmp/from_scwrl_1743882476_b.pdb or /var/tmp/from_scwrl_1743882476_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS4.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation FAMSD_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1581184461.pdb -s /var/tmp/to_scwrl_1581184461.seq -o /var/tmp/from_scwrl_1581184461.pdb > /var/tmp/scwrl_1581184461.log Error: can't open any of /var/tmp/from_scwrl_1581184461.pdb or /var/tmp/from_scwrl_1581184461_b.pdb or /var/tmp/from_scwrl_1581184461_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMSD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FAMSD_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_966610433.pdb -s /var/tmp/to_scwrl_966610433.seq -o /var/tmp/from_scwrl_966610433.pdb > /var/tmp/scwrl_966610433.log Error: can't open any of /var/tmp/from_scwrl_966610433.pdb or /var/tmp/from_scwrl_966610433_b.pdb or /var/tmp/from_scwrl_966610433_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMSD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS1.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation FAMS_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1456711264.pdb -s /var/tmp/to_scwrl_1456711264.seq -o /var/tmp/from_scwrl_1456711264.pdb > /var/tmp/scwrl_1456711264.log Error: can't open any of /var/tmp/from_scwrl_1456711264.pdb or /var/tmp/from_scwrl_1456711264_b.pdb or /var/tmp/from_scwrl_1456711264_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS1-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS2.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation FAMS_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_489358977.pdb -s /var/tmp/to_scwrl_489358977.seq -o /var/tmp/from_scwrl_489358977.pdb > /var/tmp/scwrl_489358977.log Error: can't open any of /var/tmp/from_scwrl_489358977.pdb or /var/tmp/from_scwrl_489358977_b.pdb or /var/tmp/from_scwrl_489358977_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS2-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS3.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation FAMS_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_2146491817.pdb -s /var/tmp/to_scwrl_2146491817.seq -o /var/tmp/from_scwrl_2146491817.pdb > /var/tmp/scwrl_2146491817.log Error: can't open any of /var/tmp/from_scwrl_2146491817.pdb or /var/tmp/from_scwrl_2146491817_b.pdb or /var/tmp/from_scwrl_2146491817_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS3-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS4.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation FAMS_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1652201632.pdb -s /var/tmp/to_scwrl_1652201632.seq -o /var/tmp/from_scwrl_1652201632.pdb > /var/tmp/scwrl_1652201632.log Error: can't open any of /var/tmp/from_scwrl_1652201632.pdb or /var/tmp/from_scwrl_1652201632_b.pdb or /var/tmp/from_scwrl_1652201632_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS4-scwrl # ReadConformPDB reading from PDB file servers/FAMS_TS5.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation FAMS_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1532832590.pdb -s /var/tmp/to_scwrl_1532832590.seq -o /var/tmp/from_scwrl_1532832590.pdb > /var/tmp/scwrl_1532832590.log Error: can't open any of /var/tmp/from_scwrl_1532832590.pdb or /var/tmp/from_scwrl_1532832590_b.pdb or /var/tmp/from_scwrl_1532832590_a.pdb Error: no new SCWRL conformation added # naming current conformation FAMS_TS5-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS1.pdb.gz looking for model 1 # Found a chain break before 104 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1384403571.pdb -s /var/tmp/to_scwrl_1384403571.seq -o /var/tmp/from_scwrl_1384403571.pdb > /var/tmp/scwrl_1384403571.log Error: can't open any of /var/tmp/from_scwrl_1384403571.pdb or /var/tmp/from_scwrl_1384403571_b.pdb or /var/tmp/from_scwrl_1384403571_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS1-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS2.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_487931161.pdb -s /var/tmp/to_scwrl_487931161.seq -o /var/tmp/from_scwrl_487931161.pdb > /var/tmp/scwrl_487931161.log Error: can't open any of /var/tmp/from_scwrl_487931161.pdb or /var/tmp/from_scwrl_487931161_b.pdb or /var/tmp/from_scwrl_487931161_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS2-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS3.pdb.gz looking for model 1 # Found a chain break before 55 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1918025891.pdb -s /var/tmp/to_scwrl_1918025891.seq -o /var/tmp/from_scwrl_1918025891.pdb > /var/tmp/scwrl_1918025891.log Error: can't open any of /var/tmp/from_scwrl_1918025891.pdb or /var/tmp/from_scwrl_1918025891_b.pdb or /var/tmp/from_scwrl_1918025891_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS3-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS4.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1102278955.pdb -s /var/tmp/to_scwrl_1102278955.seq -o /var/tmp/from_scwrl_1102278955.pdb > /var/tmp/scwrl_1102278955.log Error: can't open any of /var/tmp/from_scwrl_1102278955.pdb or /var/tmp/from_scwrl_1102278955_b.pdb or /var/tmp/from_scwrl_1102278955_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS4-scwrl # ReadConformPDB reading from PDB file servers/FOLDpro_TS5.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation FOLDpro_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_2005719421.pdb -s /var/tmp/to_scwrl_2005719421.seq -o /var/tmp/from_scwrl_2005719421.pdb > /var/tmp/scwrl_2005719421.log Error: can't open any of /var/tmp/from_scwrl_2005719421.pdb or /var/tmp/from_scwrl_2005719421_b.pdb or /var/tmp/from_scwrl_2005719421_a.pdb Error: no new SCWRL conformation added # naming current conformation FOLDpro_TS5-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FORTE1_AL1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1509921487.pdb -s /var/tmp/to_scwrl_1509921487.seq -o /var/tmp/from_scwrl_1509921487.pdb > /var/tmp/scwrl_1509921487.log Error: can't open any of /var/tmp/from_scwrl_1509921487.pdb or /var/tmp/from_scwrl_1509921487_b.pdb or /var/tmp/from_scwrl_1509921487_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FORTE1_AL2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1007594152.pdb -s /var/tmp/to_scwrl_1007594152.seq -o /var/tmp/from_scwrl_1007594152.pdb > /var/tmp/scwrl_1007594152.log Error: can't open any of /var/tmp/from_scwrl_1007594152.pdb or /var/tmp/from_scwrl_1007594152_b.pdb or /var/tmp/from_scwrl_1007594152_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FORTE1_AL3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_2123201929.pdb -s /var/tmp/to_scwrl_2123201929.seq -o /var/tmp/from_scwrl_2123201929.pdb > /var/tmp/scwrl_2123201929.log Error: can't open any of /var/tmp/from_scwrl_2123201929.pdb or /var/tmp/from_scwrl_2123201929_b.pdb or /var/tmp/from_scwrl_2123201929_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FORTE1_AL4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_930452156.pdb -s /var/tmp/to_scwrl_930452156.seq -o /var/tmp/from_scwrl_930452156.pdb > /var/tmp/scwrl_930452156.log Error: can't open any of /var/tmp/from_scwrl_930452156.pdb or /var/tmp/from_scwrl_930452156_b.pdb or /var/tmp/from_scwrl_930452156_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE1_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FORTE1_AL5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_739801366.pdb -s /var/tmp/to_scwrl_739801366.seq -o /var/tmp/from_scwrl_739801366.pdb > /var/tmp/scwrl_739801366.log Error: can't open any of /var/tmp/from_scwrl_739801366.pdb or /var/tmp/from_scwrl_739801366_b.pdb or /var/tmp/from_scwrl_739801366_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE1_AL5-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FORTE2_AL1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1252794751.pdb -s /var/tmp/to_scwrl_1252794751.seq -o /var/tmp/from_scwrl_1252794751.pdb > /var/tmp/scwrl_1252794751.log Error: can't open any of /var/tmp/from_scwrl_1252794751.pdb or /var/tmp/from_scwrl_1252794751_b.pdb or /var/tmp/from_scwrl_1252794751_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL1-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FORTE2_AL2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_799784739.pdb -s /var/tmp/to_scwrl_799784739.seq -o /var/tmp/from_scwrl_799784739.pdb > /var/tmp/scwrl_799784739.log Error: can't open any of /var/tmp/from_scwrl_799784739.pdb or /var/tmp/from_scwrl_799784739_b.pdb or /var/tmp/from_scwrl_799784739_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL2-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FORTE2_AL3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1317983800.pdb -s /var/tmp/to_scwrl_1317983800.seq -o /var/tmp/from_scwrl_1317983800.pdb > /var/tmp/scwrl_1317983800.log Error: can't open any of /var/tmp/from_scwrl_1317983800.pdb or /var/tmp/from_scwrl_1317983800_b.pdb or /var/tmp/from_scwrl_1317983800_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL3-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FORTE2_AL4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_127998481.pdb -s /var/tmp/to_scwrl_127998481.seq -o /var/tmp/from_scwrl_127998481.pdb > /var/tmp/scwrl_127998481.log Error: can't open any of /var/tmp/from_scwrl_127998481.pdb or /var/tmp/from_scwrl_127998481_b.pdb or /var/tmp/from_scwrl_127998481_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL4-scwrl # ReadConformPDB reading from PDB file servers/FORTE2_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FORTE2_AL5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_2070431262.pdb -s /var/tmp/to_scwrl_2070431262.seq -o /var/tmp/from_scwrl_2070431262.pdb > /var/tmp/scwrl_2070431262.log Error: can't open any of /var/tmp/from_scwrl_2070431262.pdb or /var/tmp/from_scwrl_2070431262_b.pdb or /var/tmp/from_scwrl_2070431262_a.pdb Error: no new SCWRL conformation added # naming current conformation FORTE2_AL5-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS1.pdb.gz looking for model 1 # Found a chain break before 47 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1315908242.pdb -s /var/tmp/to_scwrl_1315908242.seq -o /var/tmp/from_scwrl_1315908242.pdb > /var/tmp/scwrl_1315908242.log Error: can't open any of /var/tmp/from_scwrl_1315908242.pdb or /var/tmp/from_scwrl_1315908242_b.pdb or /var/tmp/from_scwrl_1315908242_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS1-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS2.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1228143981.pdb -s /var/tmp/to_scwrl_1228143981.seq -o /var/tmp/from_scwrl_1228143981.pdb > /var/tmp/scwrl_1228143981.log Error: can't open any of /var/tmp/from_scwrl_1228143981.pdb or /var/tmp/from_scwrl_1228143981_b.pdb or /var/tmp/from_scwrl_1228143981_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS2-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS3.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1992364085.pdb -s /var/tmp/to_scwrl_1992364085.seq -o /var/tmp/from_scwrl_1992364085.pdb > /var/tmp/scwrl_1992364085.log Error: can't open any of /var/tmp/from_scwrl_1992364085.pdb or /var/tmp/from_scwrl_1992364085_b.pdb or /var/tmp/from_scwrl_1992364085_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS3-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS4.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1535581069.pdb -s /var/tmp/to_scwrl_1535581069.seq -o /var/tmp/from_scwrl_1535581069.pdb > /var/tmp/scwrl_1535581069.log Error: can't open any of /var/tmp/from_scwrl_1535581069.pdb or /var/tmp/from_scwrl_1535581069_b.pdb or /var/tmp/from_scwrl_1535581069_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS4-scwrl # ReadConformPDB reading from PDB file servers/FPSOLVER-SERVER_TS5.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation FPSOLVER-SERVER_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_551023583.pdb -s /var/tmp/to_scwrl_551023583.seq -o /var/tmp/from_scwrl_551023583.pdb > /var/tmp/scwrl_551023583.log Error: can't open any of /var/tmp/from_scwrl_551023583.pdb or /var/tmp/from_scwrl_551023583_b.pdb or /var/tmp/from_scwrl_551023583_a.pdb Error: no new SCWRL conformation added # naming current conformation FPSOLVER-SERVER_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS1.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_102179320.pdb -s /var/tmp/to_scwrl_102179320.seq -o /var/tmp/from_scwrl_102179320.pdb > /var/tmp/scwrl_102179320.log Error: can't open any of /var/tmp/from_scwrl_102179320.pdb or /var/tmp/from_scwrl_102179320_b.pdb or /var/tmp/from_scwrl_102179320_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS2.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1879061784.pdb -s /var/tmp/to_scwrl_1879061784.seq -o /var/tmp/from_scwrl_1879061784.pdb > /var/tmp/scwrl_1879061784.log Error: can't open any of /var/tmp/from_scwrl_1879061784.pdb or /var/tmp/from_scwrl_1879061784_b.pdb or /var/tmp/from_scwrl_1879061784_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS3.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_21729454.pdb -s /var/tmp/to_scwrl_21729454.seq -o /var/tmp/from_scwrl_21729454.pdb > /var/tmp/scwrl_21729454.log Error: can't open any of /var/tmp/from_scwrl_21729454.pdb or /var/tmp/from_scwrl_21729454_b.pdb or /var/tmp/from_scwrl_21729454_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FUGMOD_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1846061796.pdb -s /var/tmp/to_scwrl_1846061796.seq -o /var/tmp/from_scwrl_1846061796.pdb > /var/tmp/scwrl_1846061796.log Error: can't open any of /var/tmp/from_scwrl_1846061796.pdb or /var/tmp/from_scwrl_1846061796_b.pdb or /var/tmp/from_scwrl_1846061796_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUGMOD_TS5.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation FUGMOD_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1312762599.pdb -s /var/tmp/to_scwrl_1312762599.seq -o /var/tmp/from_scwrl_1312762599.pdb > /var/tmp/scwrl_1312762599.log Error: can't open any of /var/tmp/from_scwrl_1312762599.pdb or /var/tmp/from_scwrl_1312762599_b.pdb or /var/tmp/from_scwrl_1312762599_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGMOD_TS5-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FUGUE_AL1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_988339887.pdb -s /var/tmp/to_scwrl_988339887.seq -o /var/tmp/from_scwrl_988339887.pdb > /var/tmp/scwrl_988339887.log Error: can't open any of /var/tmp/from_scwrl_988339887.pdb or /var/tmp/from_scwrl_988339887_b.pdb or /var/tmp/from_scwrl_988339887_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL1-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1155289413.pdb -s /var/tmp/to_scwrl_1155289413.seq -o /var/tmp/from_scwrl_1155289413.pdb > /var/tmp/scwrl_1155289413.log Error: can't open any of /var/tmp/from_scwrl_1155289413.pdb or /var/tmp/from_scwrl_1155289413_b.pdb or /var/tmp/from_scwrl_1155289413_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL2-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FUGUE_AL3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1802121576.pdb -s /var/tmp/to_scwrl_1802121576.seq -o /var/tmp/from_scwrl_1802121576.pdb > /var/tmp/scwrl_1802121576.log Error: can't open any of /var/tmp/from_scwrl_1802121576.pdb or /var/tmp/from_scwrl_1802121576_b.pdb or /var/tmp/from_scwrl_1802121576_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL3-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FUGUE_AL4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_987348057.pdb -s /var/tmp/to_scwrl_987348057.seq -o /var/tmp/from_scwrl_987348057.pdb > /var/tmp/scwrl_987348057.log Error: can't open any of /var/tmp/from_scwrl_987348057.pdb or /var/tmp/from_scwrl_987348057_b.pdb or /var/tmp/from_scwrl_987348057_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL4-scwrl # ReadConformPDB reading from PDB file servers/FUGUE_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation FUGUE_AL5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_660007399.pdb -s /var/tmp/to_scwrl_660007399.seq -o /var/tmp/from_scwrl_660007399.pdb > /var/tmp/scwrl_660007399.log Error: can't open any of /var/tmp/from_scwrl_660007399.pdb or /var/tmp/from_scwrl_660007399_b.pdb or /var/tmp/from_scwrl_660007399_a.pdb Error: no new SCWRL conformation added # naming current conformation FUGUE_AL5-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1187470520.pdb -s /var/tmp/to_scwrl_1187470520.seq -o /var/tmp/from_scwrl_1187470520.pdb > /var/tmp/scwrl_1187470520.log Error: can't open any of /var/tmp/from_scwrl_1187470520.pdb or /var/tmp/from_scwrl_1187470520_b.pdb or /var/tmp/from_scwrl_1187470520_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS1-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_224267981.pdb -s /var/tmp/to_scwrl_224267981.seq -o /var/tmp/from_scwrl_224267981.pdb > /var/tmp/scwrl_224267981.log Error: can't open any of /var/tmp/from_scwrl_224267981.pdb or /var/tmp/from_scwrl_224267981_b.pdb or /var/tmp/from_scwrl_224267981_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS2-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS3.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1147938560.pdb -s /var/tmp/to_scwrl_1147938560.seq -o /var/tmp/from_scwrl_1147938560.pdb > /var/tmp/scwrl_1147938560.log Error: can't open any of /var/tmp/from_scwrl_1147938560.pdb or /var/tmp/from_scwrl_1147938560_b.pdb or /var/tmp/from_scwrl_1147938560_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS3-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation FUNCTION_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_958012765.pdb -s /var/tmp/to_scwrl_958012765.seq -o /var/tmp/from_scwrl_958012765.pdb > /var/tmp/scwrl_958012765.log Error: can't open any of /var/tmp/from_scwrl_958012765.pdb or /var/tmp/from_scwrl_958012765_b.pdb or /var/tmp/from_scwrl_958012765_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS4-scwrl # ReadConformPDB reading from PDB file servers/FUNCTION_TS5.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation FUNCTION_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1326546936.pdb -s /var/tmp/to_scwrl_1326546936.seq -o /var/tmp/from_scwrl_1326546936.pdb > /var/tmp/scwrl_1326546936.log Error: can't open any of /var/tmp/from_scwrl_1326546936.pdb or /var/tmp/from_scwrl_1326546936_b.pdb or /var/tmp/from_scwrl_1326546936_a.pdb Error: no new SCWRL conformation added # naming current conformation FUNCTION_TS5-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1006174335.pdb -s /var/tmp/to_scwrl_1006174335.seq -o /var/tmp/from_scwrl_1006174335.pdb > /var/tmp/scwrl_1006174335.log Error: can't open any of /var/tmp/from_scwrl_1006174335.pdb or /var/tmp/from_scwrl_1006174335_b.pdb or /var/tmp/from_scwrl_1006174335_a.pdb Error: no new SCWRL conformation added # naming current conformation Frankenstein_TS1-scwrl # ReadConformPDB reading from PDB file servers/Frankenstein_TS2.pdb.gz looking for model 1 # Found a chain break before 98 # copying to AlignedFragments data structure # naming current conformation Frankenstein_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_320450605.pdb -s /var/tmp/to_scwrl_320450605.seq -o /var/tmp/from_scwrl_320450605.pdb > /var/tmp/scwrl_320450605.log Error: can't open any of /var/tmp/from_scwrl_320450605.pdb or /var/tmp/from_scwrl_320450605_b.pdb or /var/tmp/from_scwrl_320450605_a.pdb Error: no new SCWRL conformation added # naming current conformation Frankenstein_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_186657442.pdb -s /var/tmp/to_scwrl_186657442.seq -o /var/tmp/from_scwrl_186657442.pdb > /var/tmp/scwrl_186657442.log Error: can't open any of /var/tmp/from_scwrl_186657442.pdb or /var/tmp/from_scwrl_186657442_b.pdb or /var/tmp/from_scwrl_186657442_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS1-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS2.pdb.gz looking for model 1 # Found a chain break before 53 # copying to AlignedFragments data structure # naming current conformation GeneSilicoMetaServer_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_981892617.pdb -s /var/tmp/to_scwrl_981892617.seq -o /var/tmp/from_scwrl_981892617.pdb > /var/tmp/scwrl_981892617.log Error: can't open any of /var/tmp/from_scwrl_981892617.pdb or /var/tmp/from_scwrl_981892617_b.pdb or /var/tmp/from_scwrl_981892617_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS2-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1250902761.pdb -s /var/tmp/to_scwrl_1250902761.seq -o /var/tmp/from_scwrl_1250902761.pdb > /var/tmp/scwrl_1250902761.log Error: can't open any of /var/tmp/from_scwrl_1250902761.pdb or /var/tmp/from_scwrl_1250902761_b.pdb or /var/tmp/from_scwrl_1250902761_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS3-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_926458808.pdb -s /var/tmp/to_scwrl_926458808.seq -o /var/tmp/from_scwrl_926458808.pdb > /var/tmp/scwrl_926458808.log Error: can't open any of /var/tmp/from_scwrl_926458808.pdb or /var/tmp/from_scwrl_926458808_b.pdb or /var/tmp/from_scwrl_926458808_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS4-scwrl # ReadConformPDB reading from PDB file servers/GeneSilicoMetaServer_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation GeneSilicoMetaServer_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_87203721.pdb -s /var/tmp/to_scwrl_87203721.seq -o /var/tmp/from_scwrl_87203721.pdb > /var/tmp/scwrl_87203721.log Error: can't open any of /var/tmp/from_scwrl_87203721.pdb or /var/tmp/from_scwrl_87203721_b.pdb or /var/tmp/from_scwrl_87203721_a.pdb Error: no new SCWRL conformation added # naming current conformation GeneSilicoMetaServer_TS5-scwrl # ReadConformPDB reading from PDB file servers/HHpred1_TS1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation HHpred1_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_2050687500.pdb -s /var/tmp/to_scwrl_2050687500.seq -o /var/tmp/from_scwrl_2050687500.pdb > /var/tmp/scwrl_2050687500.log Error: can't open any of /var/tmp/from_scwrl_2050687500.pdb or /var/tmp/from_scwrl_2050687500_b.pdb or /var/tmp/from_scwrl_2050687500_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred1_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred2_TS1.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation HHpred2_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_96958961.pdb -s /var/tmp/to_scwrl_96958961.seq -o /var/tmp/from_scwrl_96958961.pdb > /var/tmp/scwrl_96958961.log Error: can't open any of /var/tmp/from_scwrl_96958961.pdb or /var/tmp/from_scwrl_96958961_b.pdb or /var/tmp/from_scwrl_96958961_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred2_TS1-scwrl # ReadConformPDB reading from PDB file servers/HHpred3_TS1.pdb.gz looking for model 1 # Found a chain break before 50 # copying to AlignedFragments data structure # naming current conformation HHpred3_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_215202202.pdb -s /var/tmp/to_scwrl_215202202.seq -o /var/tmp/from_scwrl_215202202.pdb > /var/tmp/scwrl_215202202.log Error: can't open any of /var/tmp/from_scwrl_215202202.pdb or /var/tmp/from_scwrl_215202202_b.pdb or /var/tmp/from_scwrl_215202202_a.pdb Error: no new SCWRL conformation added # naming current conformation HHpred3_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1973635115.pdb -s /var/tmp/to_scwrl_1973635115.seq -o /var/tmp/from_scwrl_1973635115.pdb > /var/tmp/scwrl_1973635115.log Error: can't open any of /var/tmp/from_scwrl_1973635115.pdb or /var/tmp/from_scwrl_1973635115_b.pdb or /var/tmp/from_scwrl_1973635115_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1412867203.pdb -s /var/tmp/to_scwrl_1412867203.seq -o /var/tmp/from_scwrl_1412867203.pdb > /var/tmp/scwrl_1412867203.log Error: can't open any of /var/tmp/from_scwrl_1412867203.pdb or /var/tmp/from_scwrl_1412867203_b.pdb or /var/tmp/from_scwrl_1412867203_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1443346184.pdb -s /var/tmp/to_scwrl_1443346184.seq -o /var/tmp/from_scwrl_1443346184.pdb > /var/tmp/scwrl_1443346184.log Error: can't open any of /var/tmp/from_scwrl_1443346184.pdb or /var/tmp/from_scwrl_1443346184_b.pdb or /var/tmp/from_scwrl_1443346184_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1818515553.pdb -s /var/tmp/to_scwrl_1818515553.seq -o /var/tmp/from_scwrl_1818515553.pdb > /var/tmp/scwrl_1818515553.log Error: can't open any of /var/tmp/from_scwrl_1818515553.pdb or /var/tmp/from_scwrl_1818515553_b.pdb or /var/tmp/from_scwrl_1818515553_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Huber-Torda-Server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Huber-Torda-Server_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_800964627.pdb -s /var/tmp/to_scwrl_800964627.seq -o /var/tmp/from_scwrl_800964627.pdb > /var/tmp/scwrl_800964627.log Error: can't open any of /var/tmp/from_scwrl_800964627.pdb or /var/tmp/from_scwrl_800964627_b.pdb or /var/tmp/from_scwrl_800964627_a.pdb Error: no new SCWRL conformation added # naming current conformation Huber-Torda-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation LOOPP_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1994369767.pdb -s /var/tmp/to_scwrl_1994369767.seq -o /var/tmp/from_scwrl_1994369767.pdb > /var/tmp/scwrl_1994369767.log Error: can't open any of /var/tmp/from_scwrl_1994369767.pdb or /var/tmp/from_scwrl_1994369767_b.pdb or /var/tmp/from_scwrl_1994369767_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS1-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS2.pdb.gz looking for model 1 # Found a chain break before 97 # copying to AlignedFragments data structure # naming current conformation LOOPP_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1920694874.pdb -s /var/tmp/to_scwrl_1920694874.seq -o /var/tmp/from_scwrl_1920694874.pdb > /var/tmp/scwrl_1920694874.log Error: can't open any of /var/tmp/from_scwrl_1920694874.pdb or /var/tmp/from_scwrl_1920694874_b.pdb or /var/tmp/from_scwrl_1920694874_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS2-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation LOOPP_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_532542764.pdb -s /var/tmp/to_scwrl_532542764.seq -o /var/tmp/from_scwrl_532542764.pdb > /var/tmp/scwrl_532542764.log Error: can't open any of /var/tmp/from_scwrl_532542764.pdb or /var/tmp/from_scwrl_532542764_b.pdb or /var/tmp/from_scwrl_532542764_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS3-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation LOOPP_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_2016099221.pdb -s /var/tmp/to_scwrl_2016099221.seq -o /var/tmp/from_scwrl_2016099221.pdb > /var/tmp/scwrl_2016099221.log Error: can't open any of /var/tmp/from_scwrl_2016099221.pdb or /var/tmp/from_scwrl_2016099221_b.pdb or /var/tmp/from_scwrl_2016099221_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS4-scwrl # ReadConformPDB reading from PDB file servers/LOOPP_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation LOOPP_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1619273023.pdb -s /var/tmp/to_scwrl_1619273023.seq -o /var/tmp/from_scwrl_1619273023.pdb > /var/tmp/scwrl_1619273023.log Error: can't open any of /var/tmp/from_scwrl_1619273023.pdb or /var/tmp/from_scwrl_1619273023_b.pdb or /var/tmp/from_scwrl_1619273023_a.pdb Error: no new SCWRL conformation added # naming current conformation LOOPP_TS5-scwrl # ReadConformPDB reading from PDB file servers/MIG_FROST_AL1.pdb.gz looking for model 1 Error: Reading chain from PDB file servers/MIG_FROST_AL1.pdb.gz failed. # naming current conformation MIG_FROST_AL1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1845305363.pdb -s /var/tmp/to_scwrl_1845305363.seq -o /var/tmp/from_scwrl_1845305363.pdb > /var/tmp/scwrl_1845305363.log Error: can't open any of /var/tmp/from_scwrl_1845305363.pdb or /var/tmp/from_scwrl_1845305363_b.pdb or /var/tmp/from_scwrl_1845305363_a.pdb Error: no new SCWRL conformation added # naming current conformation MIG_FROST_AL1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS1.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_856955461.pdb -s /var/tmp/to_scwrl_856955461.seq -o /var/tmp/from_scwrl_856955461.pdb > /var/tmp/scwrl_856955461.log Error: can't open any of /var/tmp/from_scwrl_856955461.pdb or /var/tmp/from_scwrl_856955461_b.pdb or /var/tmp/from_scwrl_856955461_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS2.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_627078791.pdb -s /var/tmp/to_scwrl_627078791.seq -o /var/tmp/from_scwrl_627078791.pdb > /var/tmp/scwrl_627078791.log Error: can't open any of /var/tmp/from_scwrl_627078791.pdb or /var/tmp/from_scwrl_627078791_b.pdb or /var/tmp/from_scwrl_627078791_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS3.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1499943293.pdb -s /var/tmp/to_scwrl_1499943293.seq -o /var/tmp/from_scwrl_1499943293.pdb > /var/tmp/scwrl_1499943293.log Error: can't open any of /var/tmp/from_scwrl_1499943293.pdb or /var/tmp/from_scwrl_1499943293_b.pdb or /var/tmp/from_scwrl_1499943293_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS4.pdb.gz looking for model 1 # Found a chain break before 70 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1844303517.pdb -s /var/tmp/to_scwrl_1844303517.seq -o /var/tmp/from_scwrl_1844303517.pdb > /var/tmp/scwrl_1844303517.log Error: can't open any of /var/tmp/from_scwrl_1844303517.pdb or /var/tmp/from_scwrl_1844303517_b.pdb or /var/tmp/from_scwrl_1844303517_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server2_TS5.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server2_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1287086189.pdb -s /var/tmp/to_scwrl_1287086189.seq -o /var/tmp/from_scwrl_1287086189.pdb > /var/tmp/scwrl_1287086189.log Error: can't open any of /var/tmp/from_scwrl_1287086189.pdb or /var/tmp/from_scwrl_1287086189_b.pdb or /var/tmp/from_scwrl_1287086189_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS1.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_539930167.pdb -s /var/tmp/to_scwrl_539930167.seq -o /var/tmp/from_scwrl_539930167.pdb > /var/tmp/scwrl_539930167.log Error: can't open any of /var/tmp/from_scwrl_539930167.pdb or /var/tmp/from_scwrl_539930167_b.pdb or /var/tmp/from_scwrl_539930167_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS2.pdb.gz looking for model 1 # Found a chain break before 67 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_2068571499.pdb -s /var/tmp/to_scwrl_2068571499.seq -o /var/tmp/from_scwrl_2068571499.pdb > /var/tmp/scwrl_2068571499.log Error: can't open any of /var/tmp/from_scwrl_2068571499.pdb or /var/tmp/from_scwrl_2068571499_b.pdb or /var/tmp/from_scwrl_2068571499_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS3.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_287541103.pdb -s /var/tmp/to_scwrl_287541103.seq -o /var/tmp/from_scwrl_287541103.pdb > /var/tmp/scwrl_287541103.log Error: can't open any of /var/tmp/from_scwrl_287541103.pdb or /var/tmp/from_scwrl_287541103_b.pdb or /var/tmp/from_scwrl_287541103_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS4.pdb.gz looking for model 1 # Found a chain break before 75 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1497942931.pdb -s /var/tmp/to_scwrl_1497942931.seq -o /var/tmp/from_scwrl_1497942931.pdb > /var/tmp/scwrl_1497942931.log Error: can't open any of /var/tmp/from_scwrl_1497942931.pdb or /var/tmp/from_scwrl_1497942931_b.pdb or /var/tmp/from_scwrl_1497942931_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Ma-OPUS-server_TS5.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation Ma-OPUS-server_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1247634788.pdb -s /var/tmp/to_scwrl_1247634788.seq -o /var/tmp/from_scwrl_1247634788.pdb > /var/tmp/scwrl_1247634788.log Error: can't open any of /var/tmp/from_scwrl_1247634788.pdb or /var/tmp/from_scwrl_1247634788_b.pdb or /var/tmp/from_scwrl_1247634788_a.pdb Error: no new SCWRL conformation added # naming current conformation Ma-OPUS-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS1.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1293715437.pdb -s /var/tmp/to_scwrl_1293715437.seq -o /var/tmp/from_scwrl_1293715437.pdb > /var/tmp/scwrl_1293715437.log Error: can't open any of /var/tmp/from_scwrl_1293715437.pdb or /var/tmp/from_scwrl_1293715437_b.pdb or /var/tmp/from_scwrl_1293715437_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS1-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS2.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1818393537.pdb -s /var/tmp/to_scwrl_1818393537.seq -o /var/tmp/from_scwrl_1818393537.pdb > /var/tmp/scwrl_1818393537.log Error: can't open any of /var/tmp/from_scwrl_1818393537.pdb or /var/tmp/from_scwrl_1818393537_b.pdb or /var/tmp/from_scwrl_1818393537_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS2-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS3.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1434292230.pdb -s /var/tmp/to_scwrl_1434292230.seq -o /var/tmp/from_scwrl_1434292230.pdb > /var/tmp/scwrl_1434292230.log Error: can't open any of /var/tmp/from_scwrl_1434292230.pdb or /var/tmp/from_scwrl_1434292230_b.pdb or /var/tmp/from_scwrl_1434292230_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS3-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS4.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_128124408.pdb -s /var/tmp/to_scwrl_128124408.seq -o /var/tmp/from_scwrl_128124408.pdb > /var/tmp/scwrl_128124408.log Error: can't open any of /var/tmp/from_scwrl_128124408.pdb or /var/tmp/from_scwrl_128124408_b.pdb or /var/tmp/from_scwrl_128124408_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS4-scwrl # ReadConformPDB reading from PDB file servers/MetaTasser_TS5.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation MetaTasser_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_921812652.pdb -s /var/tmp/to_scwrl_921812652.seq -o /var/tmp/from_scwrl_921812652.pdb > /var/tmp/scwrl_921812652.log Error: can't open any of /var/tmp/from_scwrl_921812652.pdb or /var/tmp/from_scwrl_921812652_b.pdb or /var/tmp/from_scwrl_921812652_a.pdb Error: no new SCWRL conformation added # naming current conformation MetaTasser_TS5-scwrl # ReadConformPDB reading from PDB file servers/NN_PUT_lab_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation NN_PUT_lab_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_213267392.pdb -s /var/tmp/to_scwrl_213267392.seq -o /var/tmp/from_scwrl_213267392.pdb > /var/tmp/scwrl_213267392.log Error: can't open any of /var/tmp/from_scwrl_213267392.pdb or /var/tmp/from_scwrl_213267392_b.pdb or /var/tmp/from_scwrl_213267392_a.pdb Error: no new SCWRL conformation added # naming current conformation NN_PUT_lab_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_215328129.pdb -s /var/tmp/to_scwrl_215328129.seq -o /var/tmp/from_scwrl_215328129.pdb > /var/tmp/scwrl_215328129.log Error: can't open any of /var/tmp/from_scwrl_215328129.pdb or /var/tmp/from_scwrl_215328129_b.pdb or /var/tmp/from_scwrl_215328129_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS1-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS2.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_825016505.pdb -s /var/tmp/to_scwrl_825016505.seq -o /var/tmp/from_scwrl_825016505.pdb > /var/tmp/scwrl_825016505.log Error: can't open any of /var/tmp/from_scwrl_825016505.pdb or /var/tmp/from_scwrl_825016505_b.pdb or /var/tmp/from_scwrl_825016505_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS2-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS3.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_310226353.pdb -s /var/tmp/to_scwrl_310226353.seq -o /var/tmp/from_scwrl_310226353.pdb > /var/tmp/scwrl_310226353.log Error: can't open any of /var/tmp/from_scwrl_310226353.pdb or /var/tmp/from_scwrl_310226353_b.pdb or /var/tmp/from_scwrl_310226353_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS3-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS4.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_430530332.pdb -s /var/tmp/to_scwrl_430530332.seq -o /var/tmp/from_scwrl_430530332.pdb > /var/tmp/scwrl_430530332.log Error: can't open any of /var/tmp/from_scwrl_430530332.pdb or /var/tmp/from_scwrl_430530332_b.pdb or /var/tmp/from_scwrl_430530332_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS4-scwrl # ReadConformPDB reading from PDB file servers/POMYSL_TS5.pdb.gz looking for model 1 # Found a chain break before 90 # copying to AlignedFragments data structure # naming current conformation POMYSL_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_651167973.pdb -s /var/tmp/to_scwrl_651167973.seq -o /var/tmp/from_scwrl_651167973.pdb > /var/tmp/scwrl_651167973.log Error: can't open any of /var/tmp/from_scwrl_651167973.pdb or /var/tmp/from_scwrl_651167973_b.pdb or /var/tmp/from_scwrl_651167973_a.pdb Error: no new SCWRL conformation added # naming current conformation POMYSL_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS1.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1723093557.pdb -s /var/tmp/to_scwrl_1723093557.seq -o /var/tmp/from_scwrl_1723093557.pdb > /var/tmp/scwrl_1723093557.log Error: can't open any of /var/tmp/from_scwrl_1723093557.pdb or /var/tmp/from_scwrl_1723093557_b.pdb or /var/tmp/from_scwrl_1723093557_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS2.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1873876516.pdb -s /var/tmp/to_scwrl_1873876516.seq -o /var/tmp/from_scwrl_1873876516.pdb > /var/tmp/scwrl_1873876516.log Error: can't open any of /var/tmp/from_scwrl_1873876516.pdb or /var/tmp/from_scwrl_1873876516_b.pdb or /var/tmp/from_scwrl_1873876516_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS3.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_322199879.pdb -s /var/tmp/to_scwrl_322199879.seq -o /var/tmp/from_scwrl_322199879.pdb > /var/tmp/scwrl_322199879.log Error: can't open any of /var/tmp/from_scwrl_322199879.pdb or /var/tmp/from_scwrl_322199879_b.pdb or /var/tmp/from_scwrl_322199879_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS4.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_376574537.pdb -s /var/tmp/to_scwrl_376574537.seq -o /var/tmp/from_scwrl_376574537.pdb > /var/tmp/scwrl_376574537.log Error: can't open any of /var/tmp/from_scwrl_376574537.pdb or /var/tmp/from_scwrl_376574537_b.pdb or /var/tmp/from_scwrl_376574537_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO-AB_TS5.pdb.gz looking for model 1 # naming current conformation PROTINFO-AB_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1720762636.pdb -s /var/tmp/to_scwrl_1720762636.seq -o /var/tmp/from_scwrl_1720762636.pdb > /var/tmp/scwrl_1720762636.log Error: can't open any of /var/tmp/from_scwrl_1720762636.pdb or /var/tmp/from_scwrl_1720762636_b.pdb or /var/tmp/from_scwrl_1720762636_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO-AB_TS5-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_95411106.pdb -s /var/tmp/to_scwrl_95411106.seq -o /var/tmp/from_scwrl_95411106.pdb > /var/tmp/scwrl_95411106.log Error: can't open any of /var/tmp/from_scwrl_95411106.pdb or /var/tmp/from_scwrl_95411106_b.pdb or /var/tmp/from_scwrl_95411106_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS1-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_909117301.pdb -s /var/tmp/to_scwrl_909117301.seq -o /var/tmp/from_scwrl_909117301.pdb > /var/tmp/scwrl_909117301.log Error: can't open any of /var/tmp/from_scwrl_909117301.pdb or /var/tmp/from_scwrl_909117301_b.pdb or /var/tmp/from_scwrl_909117301_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS2-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS3.pdb.gz looking for model 1 # Found a chain break before 93 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1589378210.pdb -s /var/tmp/to_scwrl_1589378210.seq -o /var/tmp/from_scwrl_1589378210.pdb > /var/tmp/scwrl_1589378210.log Error: can't open any of /var/tmp/from_scwrl_1589378210.pdb or /var/tmp/from_scwrl_1589378210_b.pdb or /var/tmp/from_scwrl_1589378210_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS3-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation PROTINFO_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1714684130.pdb -s /var/tmp/to_scwrl_1714684130.seq -o /var/tmp/from_scwrl_1714684130.pdb > /var/tmp/scwrl_1714684130.log Error: can't open any of /var/tmp/from_scwrl_1714684130.pdb or /var/tmp/from_scwrl_1714684130_b.pdb or /var/tmp/from_scwrl_1714684130_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS4-scwrl # ReadConformPDB reading from PDB file servers/PROTINFO_TS5.pdb.gz looking for model 1 # Found a chain break before 102 # copying to AlignedFragments data structure # naming current conformation PROTINFO_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_606939018.pdb -s /var/tmp/to_scwrl_606939018.seq -o /var/tmp/from_scwrl_606939018.pdb > /var/tmp/scwrl_606939018.log Error: can't open any of /var/tmp/from_scwrl_606939018.pdb or /var/tmp/from_scwrl_606939018_b.pdb or /var/tmp/from_scwrl_606939018_a.pdb Error: no new SCWRL conformation added # naming current conformation PROTINFO_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS1.pdb.gz looking for model 1 # Found a chain break before 95 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_298850024.pdb -s /var/tmp/to_scwrl_298850024.seq -o /var/tmp/from_scwrl_298850024.pdb > /var/tmp/scwrl_298850024.log Error: can't open any of /var/tmp/from_scwrl_298850024.pdb or /var/tmp/from_scwrl_298850024_b.pdb or /var/tmp/from_scwrl_298850024_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Pcons6_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_194279274.pdb -s /var/tmp/to_scwrl_194279274.seq -o /var/tmp/from_scwrl_194279274.pdb > /var/tmp/scwrl_194279274.log Error: can't open any of /var/tmp/from_scwrl_194279274.pdb or /var/tmp/from_scwrl_194279274_b.pdb or /var/tmp/from_scwrl_194279274_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS3.pdb.gz looking for model 1 # Found a chain break before 5 # copying to AlignedFragments data structure # naming current conformation Pcons6_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_2106882311.pdb -s /var/tmp/to_scwrl_2106882311.seq -o /var/tmp/from_scwrl_2106882311.pdb > /var/tmp/scwrl_2106882311.log Error: can't open any of /var/tmp/from_scwrl_2106882311.pdb or /var/tmp/from_scwrl_2106882311_b.pdb or /var/tmp/from_scwrl_2106882311_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Pcons6_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_2143153541.pdb -s /var/tmp/to_scwrl_2143153541.seq -o /var/tmp/from_scwrl_2143153541.pdb > /var/tmp/scwrl_2143153541.log Error: can't open any of /var/tmp/from_scwrl_2143153541.pdb or /var/tmp/from_scwrl_2143153541_b.pdb or /var/tmp/from_scwrl_2143153541_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pcons6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Pcons6_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1481365463.pdb -s /var/tmp/to_scwrl_1481365463.seq -o /var/tmp/from_scwrl_1481365463.pdb > /var/tmp/scwrl_1481365463.log Error: can't open any of /var/tmp/from_scwrl_1481365463.pdb or /var/tmp/from_scwrl_1481365463_b.pdb or /var/tmp/from_scwrl_1481365463_a.pdb Error: no new SCWRL conformation added # naming current conformation Pcons6_TS5-scwrl # ReadConformPDB reading from PDB file servers/Phyre-1_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Phyre-1_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_499328831.pdb -s /var/tmp/to_scwrl_499328831.seq -o /var/tmp/from_scwrl_499328831.pdb > /var/tmp/scwrl_499328831.log Error: can't open any of /var/tmp/from_scwrl_499328831.pdb or /var/tmp/from_scwrl_499328831_b.pdb or /var/tmp/from_scwrl_499328831_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-1_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_2064241393.pdb -s /var/tmp/to_scwrl_2064241393.seq -o /var/tmp/from_scwrl_2064241393.pdb > /var/tmp/scwrl_2064241393.log Error: can't open any of /var/tmp/from_scwrl_2064241393.pdb or /var/tmp/from_scwrl_2064241393_b.pdb or /var/tmp/from_scwrl_2064241393_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS1-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1768906567.pdb -s /var/tmp/to_scwrl_1768906567.seq -o /var/tmp/from_scwrl_1768906567.pdb > /var/tmp/scwrl_1768906567.log Error: can't open any of /var/tmp/from_scwrl_1768906567.pdb or /var/tmp/from_scwrl_1768906567_b.pdb or /var/tmp/from_scwrl_1768906567_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS2-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1997271762.pdb -s /var/tmp/to_scwrl_1997271762.seq -o /var/tmp/from_scwrl_1997271762.pdb > /var/tmp/scwrl_1997271762.log Error: can't open any of /var/tmp/from_scwrl_1997271762.pdb or /var/tmp/from_scwrl_1997271762_b.pdb or /var/tmp/from_scwrl_1997271762_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS3-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1164392535.pdb -s /var/tmp/to_scwrl_1164392535.seq -o /var/tmp/from_scwrl_1164392535.pdb > /var/tmp/scwrl_1164392535.log Error: can't open any of /var/tmp/from_scwrl_1164392535.pdb or /var/tmp/from_scwrl_1164392535_b.pdb or /var/tmp/from_scwrl_1164392535_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS4-scwrl # ReadConformPDB reading from PDB file servers/Phyre-2_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation Phyre-2_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_915138358.pdb -s /var/tmp/to_scwrl_915138358.seq -o /var/tmp/from_scwrl_915138358.pdb > /var/tmp/scwrl_915138358.log Error: can't open any of /var/tmp/from_scwrl_915138358.pdb or /var/tmp/from_scwrl_915138358_b.pdb or /var/tmp/from_scwrl_915138358_a.pdb Error: no new SCWRL conformation added # naming current conformation Phyre-2_TS5-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS1.pdb.gz looking for model 1 # naming current conformation Pmodeller6_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1668181652.pdb -s /var/tmp/to_scwrl_1668181652.seq -o /var/tmp/from_scwrl_1668181652.pdb > /var/tmp/scwrl_1668181652.log Error: can't open any of /var/tmp/from_scwrl_1668181652.pdb or /var/tmp/from_scwrl_1668181652_b.pdb or /var/tmp/from_scwrl_1668181652_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS1-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS2.pdb.gz looking for model 1 # naming current conformation Pmodeller6_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_451201119.pdb -s /var/tmp/to_scwrl_451201119.seq -o /var/tmp/from_scwrl_451201119.pdb > /var/tmp/scwrl_451201119.log Error: can't open any of /var/tmp/from_scwrl_451201119.pdb or /var/tmp/from_scwrl_451201119_b.pdb or /var/tmp/from_scwrl_451201119_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS2-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1043262766.pdb -s /var/tmp/to_scwrl_1043262766.seq -o /var/tmp/from_scwrl_1043262766.pdb > /var/tmp/scwrl_1043262766.log Error: can't open any of /var/tmp/from_scwrl_1043262766.pdb or /var/tmp/from_scwrl_1043262766_b.pdb or /var/tmp/from_scwrl_1043262766_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS3-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_442510657.pdb -s /var/tmp/to_scwrl_442510657.seq -o /var/tmp/from_scwrl_442510657.pdb > /var/tmp/scwrl_442510657.log Error: can't open any of /var/tmp/from_scwrl_442510657.pdb or /var/tmp/from_scwrl_442510657_b.pdb or /var/tmp/from_scwrl_442510657_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS4-scwrl # ReadConformPDB reading from PDB file servers/Pmodeller6_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation Pmodeller6_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_664468511.pdb -s /var/tmp/to_scwrl_664468511.seq -o /var/tmp/from_scwrl_664468511.pdb > /var/tmp/scwrl_664468511.log Error: can't open any of /var/tmp/from_scwrl_664468511.pdb or /var/tmp/from_scwrl_664468511_b.pdb or /var/tmp/from_scwrl_664468511_a.pdb Error: no new SCWRL conformation added # naming current conformation Pmodeller6_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS1.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1258590895.pdb -s /var/tmp/to_scwrl_1258590895.seq -o /var/tmp/from_scwrl_1258590895.pdb > /var/tmp/scwrl_1258590895.log Error: can't open any of /var/tmp/from_scwrl_1258590895.pdb or /var/tmp/from_scwrl_1258590895_b.pdb or /var/tmp/from_scwrl_1258590895_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS2.pdb.gz looking for model 1 # Found a chain break before 63 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1267527161.pdb -s /var/tmp/to_scwrl_1267527161.seq -o /var/tmp/from_scwrl_1267527161.pdb > /var/tmp/scwrl_1267527161.log Error: can't open any of /var/tmp/from_scwrl_1267527161.pdb or /var/tmp/from_scwrl_1267527161_b.pdb or /var/tmp/from_scwrl_1267527161_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS3.pdb.gz looking for model 1 # Found a chain break before 56 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_974694865.pdb -s /var/tmp/to_scwrl_974694865.seq -o /var/tmp/from_scwrl_974694865.pdb > /var/tmp/scwrl_974694865.log Error: can't open any of /var/tmp/from_scwrl_974694865.pdb or /var/tmp/from_scwrl_974694865_b.pdb or /var/tmp/from_scwrl_974694865_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS4.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1689121227.pdb -s /var/tmp/to_scwrl_1689121227.seq -o /var/tmp/from_scwrl_1689121227.pdb > /var/tmp/scwrl_1689121227.log Error: can't open any of /var/tmp/from_scwrl_1689121227.pdb or /var/tmp/from_scwrl_1689121227_b.pdb or /var/tmp/from_scwrl_1689121227_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR-ACE_TS5.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation RAPTOR-ACE_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1918695134.pdb -s /var/tmp/to_scwrl_1918695134.seq -o /var/tmp/from_scwrl_1918695134.pdb > /var/tmp/scwrl_1918695134.log Error: can't open any of /var/tmp/from_scwrl_1918695134.pdb or /var/tmp/from_scwrl_1918695134_b.pdb or /var/tmp/from_scwrl_1918695134_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR-ACE_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS1.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_550304775.pdb -s /var/tmp/to_scwrl_550304775.seq -o /var/tmp/from_scwrl_550304775.pdb > /var/tmp/scwrl_550304775.log Error: can't open any of /var/tmp/from_scwrl_550304775.pdb or /var/tmp/from_scwrl_550304775_b.pdb or /var/tmp/from_scwrl_550304775_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS2.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1415514096.pdb -s /var/tmp/to_scwrl_1415514096.seq -o /var/tmp/from_scwrl_1415514096.pdb > /var/tmp/scwrl_1415514096.log Error: can't open any of /var/tmp/from_scwrl_1415514096.pdb or /var/tmp/from_scwrl_1415514096_b.pdb or /var/tmp/from_scwrl_1415514096_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS3.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_93411367.pdb -s /var/tmp/to_scwrl_93411367.seq -o /var/tmp/from_scwrl_93411367.pdb > /var/tmp/scwrl_93411367.log Error: can't open any of /var/tmp/from_scwrl_93411367.pdb or /var/tmp/from_scwrl_93411367_b.pdb or /var/tmp/from_scwrl_93411367_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS4.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_926879312.pdb -s /var/tmp/to_scwrl_926879312.seq -o /var/tmp/from_scwrl_926879312.pdb > /var/tmp/scwrl_926879312.log Error: can't open any of /var/tmp/from_scwrl_926879312.pdb or /var/tmp/from_scwrl_926879312_b.pdb or /var/tmp/from_scwrl_926879312_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTORESS_TS5.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation RAPTORESS_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_988793086.pdb -s /var/tmp/to_scwrl_988793086.seq -o /var/tmp/from_scwrl_988793086.pdb > /var/tmp/scwrl_988793086.log Error: can't open any of /var/tmp/from_scwrl_988793086.pdb or /var/tmp/from_scwrl_988793086_b.pdb or /var/tmp/from_scwrl_988793086_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTORESS_TS5-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS1.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_188822473.pdb -s /var/tmp/to_scwrl_188822473.seq -o /var/tmp/from_scwrl_188822473.pdb > /var/tmp/scwrl_188822473.log Error: can't open any of /var/tmp/from_scwrl_188822473.pdb or /var/tmp/from_scwrl_188822473_b.pdb or /var/tmp/from_scwrl_188822473_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS1-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS2.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1835996612.pdb -s /var/tmp/to_scwrl_1835996612.seq -o /var/tmp/from_scwrl_1835996612.pdb > /var/tmp/scwrl_1835996612.log Error: can't open any of /var/tmp/from_scwrl_1835996612.pdb or /var/tmp/from_scwrl_1835996612_b.pdb or /var/tmp/from_scwrl_1835996612_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS2-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS3.pdb.gz looking for model 1 # Found a chain break before 66 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_430687649.pdb -s /var/tmp/to_scwrl_430687649.seq -o /var/tmp/from_scwrl_430687649.pdb > /var/tmp/scwrl_430687649.log Error: can't open any of /var/tmp/from_scwrl_430687649.pdb or /var/tmp/from_scwrl_430687649_b.pdb or /var/tmp/from_scwrl_430687649_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS3-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS4.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1903506603.pdb -s /var/tmp/to_scwrl_1903506603.seq -o /var/tmp/from_scwrl_1903506603.pdb > /var/tmp/scwrl_1903506603.log Error: can't open any of /var/tmp/from_scwrl_1903506603.pdb or /var/tmp/from_scwrl_1903506603_b.pdb or /var/tmp/from_scwrl_1903506603_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS4-scwrl # ReadConformPDB reading from PDB file servers/RAPTOR_TS5.pdb.gz looking for model 1 # Found a chain break before 46 # copying to AlignedFragments data structure # naming current conformation RAPTOR_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_295451983.pdb -s /var/tmp/to_scwrl_295451983.seq -o /var/tmp/from_scwrl_295451983.pdb > /var/tmp/scwrl_295451983.log Error: can't open any of /var/tmp/from_scwrl_295451983.pdb or /var/tmp/from_scwrl_295451983_b.pdb or /var/tmp/from_scwrl_295451983_a.pdb Error: no new SCWRL conformation added # naming current conformation RAPTOR_TS5-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS1.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_729537673.pdb -s /var/tmp/to_scwrl_729537673.seq -o /var/tmp/from_scwrl_729537673.pdb > /var/tmp/scwrl_729537673.log Error: can't open any of /var/tmp/from_scwrl_729537673.pdb or /var/tmp/from_scwrl_729537673_b.pdb or /var/tmp/from_scwrl_729537673_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS1-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS2.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_2097785877.pdb -s /var/tmp/to_scwrl_2097785877.seq -o /var/tmp/from_scwrl_2097785877.pdb > /var/tmp/scwrl_2097785877.log Error: can't open any of /var/tmp/from_scwrl_2097785877.pdb or /var/tmp/from_scwrl_2097785877_b.pdb or /var/tmp/from_scwrl_2097785877_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS2-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS3.pdb.gz looking for model 1 # Found a chain break before 5 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_254850647.pdb -s /var/tmp/to_scwrl_254850647.seq -o /var/tmp/from_scwrl_254850647.pdb > /var/tmp/scwrl_254850647.log Error: can't open any of /var/tmp/from_scwrl_254850647.pdb or /var/tmp/from_scwrl_254850647_b.pdb or /var/tmp/from_scwrl_254850647_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS3-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS4.pdb.gz looking for model 1 # naming current conformation ROBETTA_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_725207567.pdb -s /var/tmp/to_scwrl_725207567.seq -o /var/tmp/from_scwrl_725207567.pdb > /var/tmp/scwrl_725207567.log Error: can't open any of /var/tmp/from_scwrl_725207567.pdb or /var/tmp/from_scwrl_725207567_b.pdb or /var/tmp/from_scwrl_725207567_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS4-scwrl # ReadConformPDB reading from PDB file servers/ROBETTA_TS5.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation ROBETTA_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1431667694.pdb -s /var/tmp/to_scwrl_1431667694.seq -o /var/tmp/from_scwrl_1431667694.pdb > /var/tmp/scwrl_1431667694.log Error: can't open any of /var/tmp/from_scwrl_1431667694.pdb or /var/tmp/from_scwrl_1431667694_b.pdb or /var/tmp/from_scwrl_1431667694_a.pdb Error: no new SCWRL conformation added # naming current conformation ROBETTA_TS5-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_754179478.pdb -s /var/tmp/to_scwrl_754179478.seq -o /var/tmp/from_scwrl_754179478.pdb > /var/tmp/scwrl_754179478.log Error: can't open any of /var/tmp/from_scwrl_754179478.pdb or /var/tmp/from_scwrl_754179478_b.pdb or /var/tmp/from_scwrl_754179478_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL1-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_641965314.pdb -s /var/tmp/to_scwrl_641965314.seq -o /var/tmp/from_scwrl_641965314.pdb > /var/tmp/scwrl_641965314.log Error: can't open any of /var/tmp/from_scwrl_641965314.pdb or /var/tmp/from_scwrl_641965314_b.pdb or /var/tmp/from_scwrl_641965314_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL2-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1053090615.pdb -s /var/tmp/to_scwrl_1053090615.seq -o /var/tmp/from_scwrl_1053090615.pdb > /var/tmp/scwrl_1053090615.log Error: can't open any of /var/tmp/from_scwrl_1053090615.pdb or /var/tmp/from_scwrl_1053090615_b.pdb or /var/tmp/from_scwrl_1053090615_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL3-scwrl # ReadConformPDB reading from PDB file servers/SAM-T02_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation SAM-T02_AL4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_603967594.pdb -s /var/tmp/to_scwrl_603967594.seq -o /var/tmp/from_scwrl_603967594.pdb > /var/tmp/scwrl_603967594.log Error: can't open any of /var/tmp/from_scwrl_603967594.pdb or /var/tmp/from_scwrl_603967594_b.pdb or /var/tmp/from_scwrl_603967594_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM-T02_AL4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS1.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation SAM_T06_server_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1806357849.pdb -s /var/tmp/to_scwrl_1806357849.seq -o /var/tmp/from_scwrl_1806357849.pdb > /var/tmp/scwrl_1806357849.log Error: can't open any of /var/tmp/from_scwrl_1806357849.pdb or /var/tmp/from_scwrl_1806357849_b.pdb or /var/tmp/from_scwrl_1806357849_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS1-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1968228972.pdb -s /var/tmp/to_scwrl_1968228972.seq -o /var/tmp/from_scwrl_1968228972.pdb > /var/tmp/scwrl_1968228972.log Error: can't open any of /var/tmp/from_scwrl_1968228972.pdb or /var/tmp/from_scwrl_1968228972_b.pdb or /var/tmp/from_scwrl_1968228972_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS2-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_124665599.pdb -s /var/tmp/to_scwrl_124665599.seq -o /var/tmp/from_scwrl_124665599.pdb > /var/tmp/scwrl_124665599.log Error: can't open any of /var/tmp/from_scwrl_124665599.pdb or /var/tmp/from_scwrl_124665599_b.pdb or /var/tmp/from_scwrl_124665599_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS3-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_110075321.pdb -s /var/tmp/to_scwrl_110075321.seq -o /var/tmp/from_scwrl_110075321.pdb > /var/tmp/scwrl_110075321.log Error: can't open any of /var/tmp/from_scwrl_110075321.pdb or /var/tmp/from_scwrl_110075321_b.pdb or /var/tmp/from_scwrl_110075321_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS4-scwrl # ReadConformPDB reading from PDB file servers/SAM_T06_server_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation SAM_T06_server_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_864008092.pdb -s /var/tmp/to_scwrl_864008092.seq -o /var/tmp/from_scwrl_864008092.pdb > /var/tmp/scwrl_864008092.log Error: can't open any of /var/tmp/from_scwrl_864008092.pdb or /var/tmp/from_scwrl_864008092_b.pdb or /var/tmp/from_scwrl_864008092_a.pdb Error: no new SCWRL conformation added # naming current conformation SAM_T06_server_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS1.pdb.gz looking for model 1 # Found a chain break before 110 # copying to AlignedFragments data structure # naming current conformation SP3_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_567176257.pdb -s /var/tmp/to_scwrl_567176257.seq -o /var/tmp/from_scwrl_567176257.pdb > /var/tmp/scwrl_567176257.log Error: can't open any of /var/tmp/from_scwrl_567176257.pdb or /var/tmp/from_scwrl_567176257_b.pdb or /var/tmp/from_scwrl_567176257_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS2.pdb.gz looking for model 1 # Found a chain break before 65 # copying to AlignedFragments data structure # naming current conformation SP3_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_774543833.pdb -s /var/tmp/to_scwrl_774543833.seq -o /var/tmp/from_scwrl_774543833.pdb > /var/tmp/scwrl_774543833.log Error: can't open any of /var/tmp/from_scwrl_774543833.pdb or /var/tmp/from_scwrl_774543833_b.pdb or /var/tmp/from_scwrl_774543833_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS3.pdb.gz looking for model 1 # Found a chain break before 74 # copying to AlignedFragments data structure # naming current conformation SP3_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_2122598987.pdb -s /var/tmp/to_scwrl_2122598987.seq -o /var/tmp/from_scwrl_2122598987.pdb > /var/tmp/scwrl_2122598987.log Error: can't open any of /var/tmp/from_scwrl_2122598987.pdb or /var/tmp/from_scwrl_2122598987_b.pdb or /var/tmp/from_scwrl_2122598987_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS4.pdb.gz looking for model 1 # Found a chain break before 85 # copying to AlignedFragments data structure # naming current conformation SP3_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1834703418.pdb -s /var/tmp/to_scwrl_1834703418.seq -o /var/tmp/from_scwrl_1834703418.pdb > /var/tmp/scwrl_1834703418.log Error: can't open any of /var/tmp/from_scwrl_1834703418.pdb or /var/tmp/from_scwrl_1834703418_b.pdb or /var/tmp/from_scwrl_1834703418_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP3_TS5.pdb.gz looking for model 1 # Found a chain break before 108 # copying to AlignedFragments data structure # naming current conformation SP3_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1749238697.pdb -s /var/tmp/to_scwrl_1749238697.seq -o /var/tmp/from_scwrl_1749238697.pdb > /var/tmp/scwrl_1749238697.log Error: can't open any of /var/tmp/from_scwrl_1749238697.pdb or /var/tmp/from_scwrl_1749238697_b.pdb or /var/tmp/from_scwrl_1749238697_a.pdb Error: no new SCWRL conformation added # naming current conformation SP3_TS5-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS1.pdb.gz looking for model 1 # Found a chain break before 83 # copying to AlignedFragments data structure # naming current conformation SP4_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1664236567.pdb -s /var/tmp/to_scwrl_1664236567.seq -o /var/tmp/from_scwrl_1664236567.pdb > /var/tmp/scwrl_1664236567.log Error: can't open any of /var/tmp/from_scwrl_1664236567.pdb or /var/tmp/from_scwrl_1664236567_b.pdb or /var/tmp/from_scwrl_1664236567_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS1-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS2.pdb.gz looking for model 1 # Found a chain break before 29 # copying to AlignedFragments data structure # naming current conformation SP4_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1605914906.pdb -s /var/tmp/to_scwrl_1605914906.seq -o /var/tmp/from_scwrl_1605914906.pdb > /var/tmp/scwrl_1605914906.log Error: can't open any of /var/tmp/from_scwrl_1605914906.pdb or /var/tmp/from_scwrl_1605914906_b.pdb or /var/tmp/from_scwrl_1605914906_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS2-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS3.pdb.gz looking for model 1 # Found a chain break before 84 # copying to AlignedFragments data structure # naming current conformation SP4_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_152059825.pdb -s /var/tmp/to_scwrl_152059825.seq -o /var/tmp/from_scwrl_152059825.pdb > /var/tmp/scwrl_152059825.log Error: can't open any of /var/tmp/from_scwrl_152059825.pdb or /var/tmp/from_scwrl_152059825_b.pdb or /var/tmp/from_scwrl_152059825_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS3-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS4.pdb.gz looking for model 1 # Found a chain break before 88 # copying to AlignedFragments data structure # naming current conformation SP4_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_932267017.pdb -s /var/tmp/to_scwrl_932267017.seq -o /var/tmp/from_scwrl_932267017.pdb > /var/tmp/scwrl_932267017.log Error: can't open any of /var/tmp/from_scwrl_932267017.pdb or /var/tmp/from_scwrl_932267017_b.pdb or /var/tmp/from_scwrl_932267017_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS4-scwrl # ReadConformPDB reading from PDB file servers/SP4_TS5.pdb.gz looking for model 1 # Found a chain break before 89 # copying to AlignedFragments data structure # naming current conformation SP4_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1699326273.pdb -s /var/tmp/to_scwrl_1699326273.seq -o /var/tmp/from_scwrl_1699326273.pdb > /var/tmp/scwrl_1699326273.log Error: can't open any of /var/tmp/from_scwrl_1699326273.pdb or /var/tmp/from_scwrl_1699326273_b.pdb or /var/tmp/from_scwrl_1699326273_a.pdb Error: no new SCWRL conformation added # naming current conformation SP4_TS5-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS1.pdb.gz looking for model 1 # Found a chain break before 100 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1078939136.pdb -s /var/tmp/to_scwrl_1078939136.seq -o /var/tmp/from_scwrl_1078939136.pdb > /var/tmp/scwrl_1078939136.log Error: can't open any of /var/tmp/from_scwrl_1078939136.pdb or /var/tmp/from_scwrl_1078939136_b.pdb or /var/tmp/from_scwrl_1078939136_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS1-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS2.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1921060102.pdb -s /var/tmp/to_scwrl_1921060102.seq -o /var/tmp/from_scwrl_1921060102.pdb > /var/tmp/scwrl_1921060102.log Error: can't open any of /var/tmp/from_scwrl_1921060102.pdb or /var/tmp/from_scwrl_1921060102_b.pdb or /var/tmp/from_scwrl_1921060102_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS2-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS3.pdb.gz looking for model 1 # Found a chain break before 99 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1888148746.pdb -s /var/tmp/to_scwrl_1888148746.seq -o /var/tmp/from_scwrl_1888148746.pdb > /var/tmp/scwrl_1888148746.log Error: can't open any of /var/tmp/from_scwrl_1888148746.pdb or /var/tmp/from_scwrl_1888148746_b.pdb or /var/tmp/from_scwrl_1888148746_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS3-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS4.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_767452102.pdb -s /var/tmp/to_scwrl_767452102.seq -o /var/tmp/from_scwrl_767452102.pdb > /var/tmp/scwrl_767452102.log Error: can't open any of /var/tmp/from_scwrl_767452102.pdb or /var/tmp/from_scwrl_767452102_b.pdb or /var/tmp/from_scwrl_767452102_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS4-scwrl # ReadConformPDB reading from PDB file servers/SPARKS2_TS5.pdb.gz looking for model 1 # Found a chain break before 68 # copying to AlignedFragments data structure # naming current conformation SPARKS2_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_204264104.pdb -s /var/tmp/to_scwrl_204264104.seq -o /var/tmp/from_scwrl_204264104.pdb > /var/tmp/scwrl_204264104.log Error: can't open any of /var/tmp/from_scwrl_204264104.pdb or /var/tmp/from_scwrl_204264104_b.pdb or /var/tmp/from_scwrl_204264104_a.pdb Error: no new SCWRL conformation added # naming current conformation SPARKS2_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1644171703.pdb -s /var/tmp/to_scwrl_1644171703.seq -o /var/tmp/from_scwrl_1644171703.pdb > /var/tmp/scwrl_1644171703.log Error: can't open any of /var/tmp/from_scwrl_1644171703.pdb or /var/tmp/from_scwrl_1644171703_b.pdb or /var/tmp/from_scwrl_1644171703_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1062904086.pdb -s /var/tmp/to_scwrl_1062904086.seq -o /var/tmp/from_scwrl_1062904086.pdb > /var/tmp/scwrl_1062904086.log Error: can't open any of /var/tmp/from_scwrl_1062904086.pdb or /var/tmp/from_scwrl_1062904086_b.pdb or /var/tmp/from_scwrl_1062904086_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_933801777.pdb -s /var/tmp/to_scwrl_933801777.seq -o /var/tmp/from_scwrl_933801777.pdb > /var/tmp/scwrl_933801777.log Error: can't open any of /var/tmp/from_scwrl_933801777.pdb or /var/tmp/from_scwrl_933801777_b.pdb or /var/tmp/from_scwrl_933801777_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1594473933.pdb -s /var/tmp/to_scwrl_1594473933.seq -o /var/tmp/from_scwrl_1594473933.pdb > /var/tmp/scwrl_1594473933.log Error: can't open any of /var/tmp/from_scwrl_1594473933.pdb or /var/tmp/from_scwrl_1594473933_b.pdb or /var/tmp/from_scwrl_1594473933_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_bnmx_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation UNI-EID_bnmx_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1317754732.pdb -s /var/tmp/to_scwrl_1317754732.seq -o /var/tmp/from_scwrl_1317754732.pdb > /var/tmp/scwrl_1317754732.log Error: can't open any of /var/tmp/from_scwrl_1317754732.pdb or /var/tmp/from_scwrl_1317754732_b.pdb or /var/tmp/from_scwrl_1317754732_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_bnmx_TS5-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_expm_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation UNI-EID_expm_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1659009343.pdb -s /var/tmp/to_scwrl_1659009343.seq -o /var/tmp/from_scwrl_1659009343.pdb > /var/tmp/scwrl_1659009343.log Error: can't open any of /var/tmp/from_scwrl_1659009343.pdb or /var/tmp/from_scwrl_1659009343_b.pdb or /var/tmp/from_scwrl_1659009343_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_expm_TS1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_878657981.pdb -s /var/tmp/to_scwrl_878657981.seq -o /var/tmp/from_scwrl_878657981.pdb > /var/tmp/scwrl_878657981.log Error: can't open any of /var/tmp/from_scwrl_878657981.pdb or /var/tmp/from_scwrl_878657981_b.pdb or /var/tmp/from_scwrl_878657981_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL1-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_2071934211.pdb -s /var/tmp/to_scwrl_2071934211.seq -o /var/tmp/from_scwrl_2071934211.pdb > /var/tmp/scwrl_2071934211.log Error: can't open any of /var/tmp/from_scwrl_2071934211.pdb or /var/tmp/from_scwrl_2071934211_b.pdb or /var/tmp/from_scwrl_2071934211_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL2-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_153491010.pdb -s /var/tmp/to_scwrl_153491010.seq -o /var/tmp/from_scwrl_153491010.pdb > /var/tmp/scwrl_153491010.log Error: can't open any of /var/tmp/from_scwrl_153491010.pdb or /var/tmp/from_scwrl_153491010_b.pdb or /var/tmp/from_scwrl_153491010_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL3-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1931748595.pdb -s /var/tmp/to_scwrl_1931748595.seq -o /var/tmp/from_scwrl_1931748595.pdb > /var/tmp/scwrl_1931748595.log Error: can't open any of /var/tmp/from_scwrl_1931748595.pdb or /var/tmp/from_scwrl_1931748595_b.pdb or /var/tmp/from_scwrl_1931748595_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL4-scwrl # ReadConformPDB reading from PDB file servers/UNI-EID_sfst_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation UNI-EID_sfst_AL5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_528418158.pdb -s /var/tmp/to_scwrl_528418158.seq -o /var/tmp/from_scwrl_528418158.pdb > /var/tmp/scwrl_528418158.log Error: can't open any of /var/tmp/from_scwrl_528418158.pdb or /var/tmp/from_scwrl_528418158_b.pdb or /var/tmp/from_scwrl_528418158_a.pdb Error: no new SCWRL conformation added # naming current conformation UNI-EID_sfst_AL5-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS1.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1959848859.pdb -s /var/tmp/to_scwrl_1959848859.seq -o /var/tmp/from_scwrl_1959848859.pdb > /var/tmp/scwrl_1959848859.log Error: can't open any of /var/tmp/from_scwrl_1959848859.pdb or /var/tmp/from_scwrl_1959848859_b.pdb or /var/tmp/from_scwrl_1959848859_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS1-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS2.pdb.gz looking for model 1 # Found a chain break before 96 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1752493921.pdb -s /var/tmp/to_scwrl_1752493921.seq -o /var/tmp/from_scwrl_1752493921.pdb > /var/tmp/scwrl_1752493921.log Error: can't open any of /var/tmp/from_scwrl_1752493921.pdb or /var/tmp/from_scwrl_1752493921_b.pdb or /var/tmp/from_scwrl_1752493921_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS2-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS3.pdb.gz looking for model 1 # Found a chain break before 112 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_653083757.pdb -s /var/tmp/to_scwrl_653083757.seq -o /var/tmp/from_scwrl_653083757.pdb > /var/tmp/scwrl_653083757.log Error: can't open any of /var/tmp/from_scwrl_653083757.pdb or /var/tmp/from_scwrl_653083757_b.pdb or /var/tmp/from_scwrl_653083757_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS3-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS4.pdb.gz looking for model 1 # Found a chain break before 115 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_2069924181.pdb -s /var/tmp/to_scwrl_2069924181.seq -o /var/tmp/from_scwrl_2069924181.pdb > /var/tmp/scwrl_2069924181.log Error: can't open any of /var/tmp/from_scwrl_2069924181.pdb or /var/tmp/from_scwrl_2069924181_b.pdb or /var/tmp/from_scwrl_2069924181_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS4-scwrl # ReadConformPDB reading from PDB file servers/Zhang-Server_TS5.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation Zhang-Server_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_469018366.pdb -s /var/tmp/to_scwrl_469018366.seq -o /var/tmp/from_scwrl_469018366.pdb > /var/tmp/scwrl_469018366.log Error: can't open any of /var/tmp/from_scwrl_469018366.pdb or /var/tmp/from_scwrl_469018366_b.pdb or /var/tmp/from_scwrl_469018366_a.pdb Error: no new SCWRL conformation added # naming current conformation Zhang-Server_TS5-scwrl # ReadConformPDB reading from PDB file servers/beautshot_TS1.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation beautshot_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1220260013.pdb -s /var/tmp/to_scwrl_1220260013.seq -o /var/tmp/from_scwrl_1220260013.pdb > /var/tmp/scwrl_1220260013.log Error: can't open any of /var/tmp/from_scwrl_1220260013.pdb or /var/tmp/from_scwrl_1220260013_b.pdb or /var/tmp/from_scwrl_1220260013_a.pdb Error: no new SCWRL conformation added # naming current conformation beautshot_TS1-scwrl # ReadConformPDB reading from PDB file servers/beautshotbase_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation beautshotbase_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_696984367.pdb -s /var/tmp/to_scwrl_696984367.seq -o /var/tmp/from_scwrl_696984367.pdb > /var/tmp/scwrl_696984367.log Error: can't open any of /var/tmp/from_scwrl_696984367.pdb or /var/tmp/from_scwrl_696984367_b.pdb or /var/tmp/from_scwrl_696984367_a.pdb Error: no new SCWRL conformation added # naming current conformation beautshotbase_TS1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation forecast-s_AL1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_444133706.pdb -s /var/tmp/to_scwrl_444133706.seq -o /var/tmp/from_scwrl_444133706.pdb > /var/tmp/scwrl_444133706.log Error: can't open any of /var/tmp/from_scwrl_444133706.pdb or /var/tmp/from_scwrl_444133706_b.pdb or /var/tmp/from_scwrl_444133706_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL1-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation forecast-s_AL2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_907479786.pdb -s /var/tmp/to_scwrl_907479786.seq -o /var/tmp/from_scwrl_907479786.pdb > /var/tmp/scwrl_907479786.log Error: can't open any of /var/tmp/from_scwrl_907479786.pdb or /var/tmp/from_scwrl_907479786_b.pdb or /var/tmp/from_scwrl_907479786_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL2-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation forecast-s_AL3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_298739417.pdb -s /var/tmp/to_scwrl_298739417.seq -o /var/tmp/from_scwrl_298739417.pdb > /var/tmp/scwrl_298739417.log Error: can't open any of /var/tmp/from_scwrl_298739417.pdb or /var/tmp/from_scwrl_298739417_b.pdb or /var/tmp/from_scwrl_298739417_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL3-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation forecast-s_AL4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_2108370273.pdb -s /var/tmp/to_scwrl_2108370273.seq -o /var/tmp/from_scwrl_2108370273.pdb > /var/tmp/scwrl_2108370273.log Error: can't open any of /var/tmp/from_scwrl_2108370273.pdb or /var/tmp/from_scwrl_2108370273_b.pdb or /var/tmp/from_scwrl_2108370273_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL4-scwrl # ReadConformPDB reading from PDB file servers/forecast-s_AL5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation forecast-s_AL5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_365911045.pdb -s /var/tmp/to_scwrl_365911045.seq -o /var/tmp/from_scwrl_365911045.pdb > /var/tmp/scwrl_365911045.log Error: can't open any of /var/tmp/from_scwrl_365911045.pdb or /var/tmp/from_scwrl_365911045_b.pdb or /var/tmp/from_scwrl_365911045_a.pdb Error: no new SCWRL conformation added # naming current conformation forecast-s_AL5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS1.pdb.gz looking for model 1 # Found a chain break before 113 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_450799242.pdb -s /var/tmp/to_scwrl_450799242.seq -o /var/tmp/from_scwrl_450799242.pdb > /var/tmp/scwrl_450799242.log Error: can't open any of /var/tmp/from_scwrl_450799242.pdb or /var/tmp/from_scwrl_450799242_b.pdb or /var/tmp/from_scwrl_450799242_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS2.pdb.gz looking for model 1 # Found a chain break before 87 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_893153643.pdb -s /var/tmp/to_scwrl_893153643.seq -o /var/tmp/from_scwrl_893153643.pdb > /var/tmp/scwrl_893153643.log Error: can't open any of /var/tmp/from_scwrl_893153643.pdb or /var/tmp/from_scwrl_893153643_b.pdb or /var/tmp/from_scwrl_893153643_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS3.pdb.gz looking for model 1 # Found a chain break before 92 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_2065237318.pdb -s /var/tmp/to_scwrl_2065237318.seq -o /var/tmp/from_scwrl_2065237318.pdb > /var/tmp/scwrl_2065237318.log Error: can't open any of /var/tmp/from_scwrl_2065237318.pdb or /var/tmp/from_scwrl_2065237318_b.pdb or /var/tmp/from_scwrl_2065237318_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS4.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1529738378.pdb -s /var/tmp/to_scwrl_1529738378.seq -o /var/tmp/from_scwrl_1529738378.pdb > /var/tmp/scwrl_1529738378.log Error: can't open any of /var/tmp/from_scwrl_1529738378.pdb or /var/tmp/from_scwrl_1529738378_b.pdb or /var/tmp/from_scwrl_1529738378_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.2_TS5.pdb.gz looking for model 1 # Found a chain break before 77 # copying to AlignedFragments data structure # naming current conformation karypis.srv.2_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_666730098.pdb -s /var/tmp/to_scwrl_666730098.seq -o /var/tmp/from_scwrl_666730098.pdb > /var/tmp/scwrl_666730098.log Error: can't open any of /var/tmp/from_scwrl_666730098.pdb or /var/tmp/from_scwrl_666730098_b.pdb or /var/tmp/from_scwrl_666730098_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.2_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS1.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1805902417.pdb -s /var/tmp/to_scwrl_1805902417.seq -o /var/tmp/from_scwrl_1805902417.pdb > /var/tmp/scwrl_1805902417.log Error: can't open any of /var/tmp/from_scwrl_1805902417.pdb or /var/tmp/from_scwrl_1805902417_b.pdb or /var/tmp/from_scwrl_1805902417_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.4_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS2.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_149706833.pdb -s /var/tmp/to_scwrl_149706833.seq -o /var/tmp/from_scwrl_149706833.pdb > /var/tmp/scwrl_149706833.log Error: can't open any of /var/tmp/from_scwrl_149706833.pdb or /var/tmp/from_scwrl_149706833_b.pdb or /var/tmp/from_scwrl_149706833_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.4_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_870994202.pdb -s /var/tmp/to_scwrl_870994202.seq -o /var/tmp/from_scwrl_870994202.pdb > /var/tmp/scwrl_870994202.log Error: can't open any of /var/tmp/from_scwrl_870994202.pdb or /var/tmp/from_scwrl_870994202_b.pdb or /var/tmp/from_scwrl_870994202_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.4_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1302590473.pdb -s /var/tmp/to_scwrl_1302590473.seq -o /var/tmp/from_scwrl_1302590473.pdb > /var/tmp/scwrl_1302590473.log Error: can't open any of /var/tmp/from_scwrl_1302590473.pdb or /var/tmp/from_scwrl_1302590473_b.pdb or /var/tmp/from_scwrl_1302590473_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.4_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv.4_TS5.pdb.gz looking for model 1 # Found a chain break before 114 # copying to AlignedFragments data structure # naming current conformation karypis.srv.4_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1212610918.pdb -s /var/tmp/to_scwrl_1212610918.seq -o /var/tmp/from_scwrl_1212610918.pdb > /var/tmp/scwrl_1212610918.log Error: can't open any of /var/tmp/from_scwrl_1212610918.pdb or /var/tmp/from_scwrl_1212610918_b.pdb or /var/tmp/from_scwrl_1212610918_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv.4_TS5-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS1.pdb.gz looking for model 1 # Found a chain break before 19 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1804795978.pdb -s /var/tmp/to_scwrl_1804795978.seq -o /var/tmp/from_scwrl_1804795978.pdb > /var/tmp/scwrl_1804795978.log Error: can't open any of /var/tmp/from_scwrl_1804795978.pdb or /var/tmp/from_scwrl_1804795978_b.pdb or /var/tmp/from_scwrl_1804795978_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS1-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS2.pdb.gz looking for model 1 # Found a chain break before 103 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_749580761.pdb -s /var/tmp/to_scwrl_749580761.seq -o /var/tmp/from_scwrl_749580761.pdb > /var/tmp/scwrl_749580761.log Error: can't open any of /var/tmp/from_scwrl_749580761.pdb or /var/tmp/from_scwrl_749580761_b.pdb or /var/tmp/from_scwrl_749580761_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS2-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation karypis.srv_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_382882005.pdb -s /var/tmp/to_scwrl_382882005.seq -o /var/tmp/from_scwrl_382882005.pdb > /var/tmp/scwrl_382882005.log Error: can't open any of /var/tmp/from_scwrl_382882005.pdb or /var/tmp/from_scwrl_382882005_b.pdb or /var/tmp/from_scwrl_382882005_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS3-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS4.pdb.gz looking for model 1 # Found a chain break before 111 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1316321674.pdb -s /var/tmp/to_scwrl_1316321674.seq -o /var/tmp/from_scwrl_1316321674.pdb > /var/tmp/scwrl_1316321674.log Error: can't open any of /var/tmp/from_scwrl_1316321674.pdb or /var/tmp/from_scwrl_1316321674_b.pdb or /var/tmp/from_scwrl_1316321674_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS4-scwrl # ReadConformPDB reading from PDB file servers/karypis.srv_TS5.pdb.gz looking for model 1 # Found a chain break before 106 # copying to AlignedFragments data structure # naming current conformation karypis.srv_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1628238741.pdb -s /var/tmp/to_scwrl_1628238741.seq -o /var/tmp/from_scwrl_1628238741.pdb > /var/tmp/scwrl_1628238741.log Error: can't open any of /var/tmp/from_scwrl_1628238741.pdb or /var/tmp/from_scwrl_1628238741_b.pdb or /var/tmp/from_scwrl_1628238741_a.pdb Error: no new SCWRL conformation added # naming current conformation karypis.srv_TS5-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS1.pdb.gz looking for model 1 # naming current conformation keasar-server_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_307332569.pdb -s /var/tmp/to_scwrl_307332569.seq -o /var/tmp/from_scwrl_307332569.pdb > /var/tmp/scwrl_307332569.log Error: can't open any of /var/tmp/from_scwrl_307332569.pdb or /var/tmp/from_scwrl_307332569_b.pdb or /var/tmp/from_scwrl_307332569_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS1-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS2.pdb.gz looking for model 1 # naming current conformation keasar-server_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1469812685.pdb -s /var/tmp/to_scwrl_1469812685.seq -o /var/tmp/from_scwrl_1469812685.pdb > /var/tmp/scwrl_1469812685.log Error: can't open any of /var/tmp/from_scwrl_1469812685.pdb or /var/tmp/from_scwrl_1469812685_b.pdb or /var/tmp/from_scwrl_1469812685_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS2-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS3.pdb.gz looking for model 1 # naming current conformation keasar-server_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1412503690.pdb -s /var/tmp/to_scwrl_1412503690.seq -o /var/tmp/from_scwrl_1412503690.pdb > /var/tmp/scwrl_1412503690.log Error: can't open any of /var/tmp/from_scwrl_1412503690.pdb or /var/tmp/from_scwrl_1412503690_b.pdb or /var/tmp/from_scwrl_1412503690_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS3-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS4.pdb.gz looking for model 1 # naming current conformation keasar-server_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_835750727.pdb -s /var/tmp/to_scwrl_835750727.seq -o /var/tmp/from_scwrl_835750727.pdb > /var/tmp/scwrl_835750727.log Error: can't open any of /var/tmp/from_scwrl_835750727.pdb or /var/tmp/from_scwrl_835750727_b.pdb or /var/tmp/from_scwrl_835750727_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS4-scwrl # ReadConformPDB reading from PDB file servers/keasar-server_TS5.pdb.gz looking for model 1 # naming current conformation keasar-server_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1282177897.pdb -s /var/tmp/to_scwrl_1282177897.seq -o /var/tmp/from_scwrl_1282177897.pdb > /var/tmp/scwrl_1282177897.log Error: can't open any of /var/tmp/from_scwrl_1282177897.pdb or /var/tmp/from_scwrl_1282177897_b.pdb or /var/tmp/from_scwrl_1282177897_a.pdb Error: no new SCWRL conformation added # naming current conformation keasar-server_TS5-scwrl # ReadConformPDB reading from PDB file servers/mGen-3D_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation mGen-3D_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1017513965.pdb -s /var/tmp/to_scwrl_1017513965.seq -o /var/tmp/from_scwrl_1017513965.pdb > /var/tmp/scwrl_1017513965.log Error: can't open any of /var/tmp/from_scwrl_1017513965.pdb or /var/tmp/from_scwrl_1017513965_b.pdb or /var/tmp/from_scwrl_1017513965_a.pdb Error: no new SCWRL conformation added # naming current conformation mGen-3D_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation nFOLD_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1488834483.pdb -s /var/tmp/to_scwrl_1488834483.seq -o /var/tmp/from_scwrl_1488834483.pdb > /var/tmp/scwrl_1488834483.log Error: can't open any of /var/tmp/from_scwrl_1488834483.pdb or /var/tmp/from_scwrl_1488834483_b.pdb or /var/tmp/from_scwrl_1488834483_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS1-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS2.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS2 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1204618431.pdb -s /var/tmp/to_scwrl_1204618431.seq -o /var/tmp/from_scwrl_1204618431.pdb > /var/tmp/scwrl_1204618431.log Error: can't open any of /var/tmp/from_scwrl_1204618431.pdb or /var/tmp/from_scwrl_1204618431_b.pdb or /var/tmp/from_scwrl_1204618431_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS2-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS3.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation nFOLD_TS3 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1486532330.pdb -s /var/tmp/to_scwrl_1486532330.seq -o /var/tmp/from_scwrl_1486532330.pdb > /var/tmp/scwrl_1486532330.log Error: can't open any of /var/tmp/from_scwrl_1486532330.pdb or /var/tmp/from_scwrl_1486532330_b.pdb or /var/tmp/from_scwrl_1486532330_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS3-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS4.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # copying to AlignedFragments data structure # naming current conformation nFOLD_TS4 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_561610851.pdb -s /var/tmp/to_scwrl_561610851.seq -o /var/tmp/from_scwrl_561610851.pdb > /var/tmp/scwrl_561610851.log Error: can't open any of /var/tmp/from_scwrl_561610851.pdb or /var/tmp/from_scwrl_561610851_b.pdb or /var/tmp/from_scwrl_561610851_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS4-scwrl # ReadConformPDB reading from PDB file servers/nFOLD_TS5.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation nFOLD_TS5 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1901602798.pdb -s /var/tmp/to_scwrl_1901602798.seq -o /var/tmp/from_scwrl_1901602798.pdb > /var/tmp/scwrl_1901602798.log Error: can't open any of /var/tmp/from_scwrl_1901602798.pdb or /var/tmp/from_scwrl_1901602798_b.pdb or /var/tmp/from_scwrl_1901602798_a.pdb Error: no new SCWRL conformation added # naming current conformation nFOLD_TS5-scwrl # ReadConformPDB reading from PDB file servers/panther2_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation panther2_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1930666036.pdb -s /var/tmp/to_scwrl_1930666036.seq -o /var/tmp/from_scwrl_1930666036.pdb > /var/tmp/scwrl_1930666036.log Error: can't open any of /var/tmp/from_scwrl_1930666036.pdb or /var/tmp/from_scwrl_1930666036_b.pdb or /var/tmp/from_scwrl_1930666036_a.pdb Error: no new SCWRL conformation added # naming current conformation panther2_TS1-scwrl # ReadConformPDB reading from PDB file servers/panther3_TS1.pdb.gz looking for model 1 # WARNING: incomplete conformation T0352 can't currently be optimized by undertaker # naming current conformation panther3_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_1469090636.pdb -s /var/tmp/to_scwrl_1469090636.seq -o /var/tmp/from_scwrl_1469090636.pdb > /var/tmp/scwrl_1469090636.log Error: can't open any of /var/tmp/from_scwrl_1469090636.pdb or /var/tmp/from_scwrl_1469090636_b.pdb or /var/tmp/from_scwrl_1469090636_a.pdb Error: no new SCWRL conformation added # naming current conformation panther3_TS1-scwrl # ReadConformPDB reading from PDB file servers/shub_TS1.pdb.gz looking for model 1 # Found a chain break before 116 # copying to AlignedFragments data structure # naming current conformation shub_TS1 # request to SCWRL produces command: ulimit -t 106 ; scwrl -i /var/tmp/to_scwrl_52858568.pdb -s /var/tmp/to_scwrl_52858568.seq -o /var/tmp/from_scwrl_52858568.pdb > /var/tmp/scwrl_52858568.log Error: can't open any of /var/tmp/from_scwrl_52858568.pdb or /var/tmp/from_scwrl_52858568_b.pdb or /var/tmp/from_scwrl_52858568_a.pdb Error: no new SCWRL conformation added # naming current conformation shub_TS1-scwrl # command:CPU_time= 27.6988 sec, elapsed time= 41.3635 sec) # command:# Prefix for output files set to decoys/ # command:# Will now start reporting costs to decoys/evaluate.predburial.rdb # command:# CostConform shub_TS1-scwrl costs 374.336 real_cost = 309.039 panther3_TS1-scwrl costs 1014.08 real_cost = 486.589 panther2_TS1-scwrl costs 1085.77 real_cost = 466.293 nFOLD_TS5-scwrl costs 29793.3 real_cost = 413.355 nFOLD_TS4-scwrl costs 6249.18 real_cost = 417.381 nFOLD_TS3-scwrl costs 16179.6 real_cost = 452.44 nFOLD_TS2-scwrl costs 12577.6 real_cost = 438.108 nFOLD_TS1-scwrl costs 13734.6 real_cost = 402.809 mGen-3D_TS1-scwrl costs 24342.1 real_cost = 433.893 keasar-server_TS5-scwrl costs 330.36 real_cost = 349.359 keasar-server_TS4-scwrl costs 328.967 real_cost = 367.341 keasar-server_TS3-scwrl costs 317.314 real_cost = 350.527 keasar-server_TS2-scwrl costs 309.32 real_cost = 349.451 keasar-server_TS1-scwrl costs 311.164 real_cost = 352.932 karypis.srv_TS5-scwrl costs 312.636 real_cost = 347.018 karypis.srv_TS4-scwrl costs 340.347 real_cost = 315.226 karypis.srv_TS3-scwrl costs 429.659 real_cost = 398.123 karypis.srv_TS2-scwrl costs 365.431 real_cost = 369.227 karypis.srv_TS1-scwrl costs 361.484 real_cost = 346.823 karypis.srv.4_TS5-scwrl costs 407.483 real_cost = 348.66 karypis.srv.4_TS4-scwrl costs 456.432 real_cost = 361.004 karypis.srv.4_TS3-scwrl costs 384.778 real_cost = 341.767 karypis.srv.4_TS2-scwrl costs 380.578 real_cost = 355.137 karypis.srv.4_TS1-scwrl costs 424.965 real_cost = 363.83 karypis.srv.2_TS5-scwrl costs 343.926 real_cost = 342.171 karypis.srv.2_TS4-scwrl costs 360.979 real_cost = 329.982 karypis.srv.2_TS3-scwrl costs 338.888 real_cost = 306.071 karypis.srv.2_TS2-scwrl costs 324.645 real_cost = 317.991 karypis.srv.2_TS1-scwrl costs 344.952 real_cost = 314.358 forecast-s_AL5-scwrl costs 30167.2 real_cost = 486.949 forecast-s_AL4-scwrl costs 24917.3 real_cost = 453.918 forecast-s_AL3-scwrl costs 98676.8 real_cost = 533.313 forecast-s_AL2-scwrl costs 40413.2 real_cost = 488.735 forecast-s_AL1-scwrl costs 35136.4 real_cost = 472.226 beautshotbase_TS1-scwrl costs 404.82 real_cost = 353.077 beautshot_TS1-scwrl costs 406.861 real_cost = 367.887 Zhang-Server_TS5-scwrl costs 381.466 real_cost = 311.297 Zhang-Server_TS4-scwrl costs 392.203 real_cost = 313.465 Zhang-Server_TS3-scwrl costs 377.303 real_cost = 296.42 Zhang-Server_TS2-scwrl costs 406.687 real_cost = 301.825 Zhang-Server_TS1-scwrl costs 452.904 real_cost = 318.295 UNI-EID_sfst_AL5-scwrl costs 55044.9 real_cost = 440.908 UNI-EID_sfst_AL4-scwrl costs 34726.5 real_cost = 454.111 UNI-EID_sfst_AL3-scwrl costs 48754.5 real_cost = 492.668 UNI-EID_sfst_AL2-scwrl costs 24359.7 real_cost = 422.582 UNI-EID_sfst_AL1-scwrl costs 71009.8 real_cost = 456 UNI-EID_expm_TS1-scwrl costs 15316 real_cost = 427.33 UNI-EID_bnmx_TS5-scwrl costs 18000.4 real_cost = 444.025 UNI-EID_bnmx_TS4-scwrl costs 87920.6 real_cost = 434.266 UNI-EID_bnmx_TS3-scwrl costs 32431.3 real_cost = 480.424 UNI-EID_bnmx_TS2-scwrl costs 69305.8 real_cost = 404.479 UNI-EID_bnmx_TS1-scwrl costs 53814.6 real_cost = 453.113 SPARKS2_TS5-scwrl costs 306.526 real_cost = 311.335 SPARKS2_TS4-scwrl costs 319.896 real_cost = 338.675 SPARKS2_TS3-scwrl costs 307.392 real_cost = 321.812 SPARKS2_TS2-scwrl costs 319.325 real_cost = 313.128 SPARKS2_TS1-scwrl costs 341.332 real_cost = 282.616 SP4_TS5-scwrl costs 317.623 real_cost = 313.994 SP4_TS4-scwrl costs 291.875 real_cost = 333.111 SP4_TS3-scwrl costs 318.159 real_cost = 326.176 SP4_TS2-scwrl costs 277.821 real_cost = 302.912 SP4_TS1-scwrl costs 309.988 real_cost = 303.902 SP3_TS5-scwrl costs 301.08 real_cost = 318.846 SP3_TS4-scwrl costs 332.699 real_cost = 323.349 SP3_TS3-scwrl costs 306.549 real_cost = 315.955 SP3_TS2-scwrl costs 317.711 real_cost = 314.787 SP3_TS1-scwrl costs 351.593 real_cost = 332.422 SAM_T06_server_TS5-scwrl costs 854.964 real_cost = 449.862 SAM_T06_server_TS4-scwrl costs 844.735 real_cost = 427.558 SAM_T06_server_TS3-scwrl costs 364.479 real_cost = 296.144 SAM_T06_server_TS2-scwrl costs 841.011 real_cost = 388.449 SAM_T06_server_TS1-scwrl costs 241.196 real_cost = 305.962 SAM-T02_AL4-scwrl costs 14766.1 real_cost = 467.446 SAM-T02_AL3-scwrl costs 9863.08 real_cost = 488.55 SAM-T02_AL2-scwrl costs 51408.6 real_cost = 406.948 SAM-T02_AL1-scwrl costs 55593 real_cost = 486.693 ROBETTA_TS5-scwrl costs 311.432 real_cost = 328.435 ROBETTA_TS4-scwrl costs 277.195 real_cost = 315.004 ROBETTA_TS3-scwrl costs 315.414 real_cost = 328.302 ROBETTA_TS2-scwrl costs 253.793 real_cost = 321.408 ROBETTA_TS1-scwrl costs 309.125 real_cost = 310.977 RAPTOR_TS5-scwrl costs 278.894 real_cost = 316.583 RAPTOR_TS4-scwrl costs 337.646 real_cost = 322.458 RAPTOR_TS3-scwrl costs 331.277 real_cost = 307.872 RAPTOR_TS2-scwrl costs 357.44 real_cost = 323.891 RAPTOR_TS1-scwrl costs 307.577 real_cost = 334.992 RAPTORESS_TS5-scwrl costs 289.432 real_cost = 312.656 RAPTORESS_TS4-scwrl costs 338.026 real_cost = 320.66 RAPTORESS_TS3-scwrl costs 332.267 real_cost = 322.343 RAPTORESS_TS2-scwrl costs 318.939 real_cost = 342.316 RAPTORESS_TS1-scwrl costs 315.494 real_cost = 337.874 RAPTOR-ACE_TS5-scwrl costs 283.53 real_cost = 313.762 RAPTOR-ACE_TS4-scwrl costs 373.475 real_cost = 314.596 RAPTOR-ACE_TS3-scwrl costs 303.01 real_cost = 323.1 RAPTOR-ACE_TS2-scwrl costs 320.778 real_cost = 308.651 RAPTOR-ACE_TS1-scwrl costs 301.08 real_cost = 318.846 Pmodeller6_TS5-scwrl costs 435.118 real_cost = 347.573 Pmodeller6_TS4-scwrl costs 435.118 real_cost = 347.573 Pmodeller6_TS3-scwrl costs 329.365 real_cost = 319.832 Pmodeller6_TS2-scwrl costs 253.793 real_cost = 321.408 Pmodeller6_TS1-scwrl costs 280.709 real_cost = 318.096 Phyre-2_TS5-scwrl costs 419.367 real_cost = 297.86 Phyre-2_TS4-scwrl costs 412.038 real_cost = 344.286 Phyre-2_TS3-scwrl costs 421.39 real_cost = 348.679 Phyre-2_TS2-scwrl costs 399.672 real_cost = 318.017 Phyre-2_TS1-scwrl costs 410.989 real_cost = 333.664 Phyre-1_TS1-scwrl costs 885.646 real_cost = 415.261 Pcons6_TS5-scwrl costs 435.118 real_cost = 347.573 Pcons6_TS4-scwrl costs 430.191 real_cost = 343.522 Pcons6_TS3-scwrl costs 315.414 real_cost = 328.302 Pcons6_TS2-scwrl costs 406.441 real_cost = 352.61 Pcons6_TS1-scwrl costs 277.287 real_cost = 334.473 PROTINFO_TS5-scwrl costs 345.595 real_cost = 360.973 PROTINFO_TS4-scwrl costs 520.547 real_cost = 404.037 PROTINFO_TS3-scwrl costs 337.363 real_cost = 332.102 PROTINFO_TS2-scwrl costs 399.6 real_cost = 342.335 PROTINFO_TS1-scwrl costs 410.507 real_cost = 346.24 PROTINFO-AB_TS5-scwrl costs 317.847 real_cost = 322.215 PROTINFO-AB_TS4-scwrl costs 315.593 real_cost = 304.814 PROTINFO-AB_TS3-scwrl costs 310.208 real_cost = 333.667 PROTINFO-AB_TS2-scwrl costs 374.549 real_cost = 352.938 PROTINFO-AB_TS1-scwrl costs 362.643 real_cost = 347.597 POMYSL_TS5-scwrl costs 362.662 real_cost = 350.524 POMYSL_TS4-scwrl costs 387.672 real_cost = 346.488 POMYSL_TS3-scwrl costs 406.61 real_cost = 366.593 POMYSL_TS2-scwrl costs 443.614 real_cost = 353.503 POMYSL_TS1-scwrl costs 392.541 real_cost = 361.542 NN_PUT_lab_TS1-scwrl costs 341.332 real_cost = 282.616 MetaTasser_TS5-scwrl costs 447.968 real_cost = 349.944 MetaTasser_TS4-scwrl costs 461.484 real_cost = 337.725 MetaTasser_TS3-scwrl costs 503.775 real_cost = 348.03 MetaTasser_TS2-scwrl costs 442.979 real_cost = 343.719 MetaTasser_TS1-scwrl costs 536.525 real_cost = 342.089 Ma-OPUS-server_TS5-scwrl costs 320.375 real_cost = 346.777 Ma-OPUS-server_TS4-scwrl costs 313.293 real_cost = 318.102 Ma-OPUS-server_TS3-scwrl costs 292.877 real_cost = 290.495 Ma-OPUS-server_TS2-scwrl costs 323.63 real_cost = 318.837 Ma-OPUS-server_TS1-scwrl costs 297.385 real_cost = 307.505 Ma-OPUS-server2_TS5-scwrl costs 344.673 real_cost = 339.09 Ma-OPUS-server2_TS4-scwrl costs 318.987 real_cost = 327.047 Ma-OPUS-server2_TS3-scwrl costs 327.171 real_cost = 326.462 Ma-OPUS-server2_TS2-scwrl costs 325.652 real_cost = 333.551 Ma-OPUS-server2_TS1-scwrl costs 292.457 real_cost = 350.41 MIG_FROST_AL1-scwrl costs 452.822 real_cost = 310.962 LOOPP_TS4-scwrl costs 361.683 real_cost = 327.682 LOOPP_TS3-scwrl costs 365.723 real_cost = 338.365 LOOPP_TS2-scwrl costs 319.948 real_cost = 365.18 LOOPP_TS1-scwrl costs 355.094 real_cost = 342.413 Huber-Torda-Server_TS5-scwrl costs 30763.7 real_cost = 400.871 Huber-Torda-Server_TS4-scwrl costs 1682.75 real_cost = 316.387 Huber-Torda-Server_TS3-scwrl costs 1303.99 real_cost = 307.357 Huber-Torda-Server_TS2-scwrl costs 1482.35 real_cost = 290.73 Huber-Torda-Server_TS1-scwrl costs 4962.96 real_cost = 279.782 HHpred3_TS1-scwrl costs 324.042 real_cost = 323.636 HHpred2_TS1-scwrl costs 377.263 real_cost = 331.234 HHpred1_TS1-scwrl costs 377.263 real_cost = 331.234 GeneSilicoMetaServer_TS5-scwrl costs 379.676 real_cost = 350.988 GeneSilicoMetaServer_TS4-scwrl costs 379.384 real_cost = 318.405 GeneSilicoMetaServer_TS3-scwrl costs 779.938 real_cost = 420.953 GeneSilicoMetaServer_TS2-scwrl costs 329.521 real_cost = 341.756 GeneSilicoMetaServer_TS1-scwrl costs 308.182 real_cost = 327.479 Frankenstein_TS2-scwrl costs 327.012 real_cost = 322.88 Frankenstein_TS1-scwrl costs 319.309 real_cost = 316.324 FUNCTION_TS5-scwrl costs 314.603 real_cost = 285.385 FUNCTION_TS4-scwrl costs 389.618 real_cost = 302.431 FUNCTION_TS3-scwrl costs 359.908 real_cost = 323.698 FUNCTION_TS2-scwrl costs 391.849 real_cost = 324.61 FUNCTION_TS1-scwrl costs 402.853 real_cost = 310.595 FUGUE_AL5-scwrl costs 20633.3 real_cost = 441.423 FUGUE_AL4-scwrl costs 11960.7 real_cost = 513.391 FUGUE_AL3-scwrl costs 58092.6 real_cost = 444.987 FUGUE_AL2-scwrl costs 54095.9 real_cost = 507.118 FUGUE_AL1-scwrl costs 13895.8 real_cost = 455.084 FUGMOD_TS5-scwrl costs 344.716 real_cost = 324.119 FUGMOD_TS4-scwrl costs 550.789 real_cost = 417.182 FUGMOD_TS3-scwrl costs 327.059 real_cost = 331.546 FUGMOD_TS2-scwrl costs 372.076 real_cost = 404.736 FUGMOD_TS1-scwrl costs 328.691 real_cost = 334.558 FPSOLVER-SERVER_TS5-scwrl costs 365.372 real_cost = 394.694 FPSOLVER-SERVER_TS4-scwrl costs 357.661 real_cost = 361.19 FPSOLVER-SERVER_TS3-scwrl costs 345.42 real_cost = 347.399 FPSOLVER-SERVER_TS2-scwrl costs 363.524 real_cost = 339.421 FPSOLVER-SERVER_TS1-scwrl costs 362.712 real_cost = 351.789 FORTE2_AL5-scwrl costs 13799.8 real_cost = 463.463 FORTE2_AL4-scwrl costs 32488.1 real_cost = 442.205 FORTE2_AL3-scwrl costs 20106.3 real_cost = 453.319 FORTE2_AL2-scwrl costs 31540.7 real_cost = 477.534 FORTE2_AL1-scwrl costs 13472.6 real_cost = 411.622 FORTE1_AL5-scwrl costs 13799.8 real_cost = 463.463 FORTE1_AL4-scwrl costs 32488.1 real_cost = 442.205 FORTE1_AL3-scwrl costs 20106.3 real_cost = 453.319 FORTE1_AL2-scwrl costs 31540.7 real_cost = 477.534 FORTE1_AL1-scwrl costs 13382.4 real_cost = 418.242 FOLDpro_TS5-scwrl costs 400.051 real_cost = 343.968 FOLDpro_TS4-scwrl costs 381.222 real_cost = 350.789 FOLDpro_TS3-scwrl costs 428.154 real_cost = 331.602 FOLDpro_TS2-scwrl costs 401.168 real_cost = 343.931 FOLDpro_TS1-scwrl costs 362.465 real_cost = 386.457 FAMS_TS5-scwrl costs 433.791 real_cost = 331.838 FAMS_TS4-scwrl costs 503.938 real_cost = 350.16 FAMS_TS3-scwrl costs 476.323 real_cost = 359.743 FAMS_TS2-scwrl costs 442.231 real_cost = 338.349 FAMS_TS1-scwrl costs 490.15 real_cost = 329.903 FAMSD_TS5-scwrl costs 380.112 real_cost = 330.24 FAMSD_TS4-scwrl costs 319.349 real_cost = 308.019 FAMSD_TS3-scwrl costs 338.514 real_cost = 287.835 FAMSD_TS2-scwrl costs 402.232 real_cost = 308.533 FAMSD_TS1-scwrl costs 328.444 real_cost = 330.344 Distill_TS5-scwrl costs 2090.96 real_cost = 443.604 Distill_TS4-scwrl costs 2094.15 real_cost = 447.406 Distill_TS3-scwrl costs 2096.06 real_cost = 443.295 Distill_TS2-scwrl costs 2092.68 real_cost = 444.474 Distill_TS1-scwrl costs 2094.22 real_cost = 444.462 CaspIta-FOX_TS5-scwrl costs 405.081 real_cost = 298.16 CaspIta-FOX_TS4-scwrl costs 528.365 real_cost = 362.685 CaspIta-FOX_TS3-scwrl costs 599.305 real_cost = 408.813 CaspIta-FOX_TS2-scwrl costs 693.788 real_cost = 412.866 CaspIta-FOX_TS1-scwrl costs 767.692 real_cost = 395.166 CIRCLE_TS5-scwrl costs 384.619 real_cost = 322.225 CIRCLE_TS4-scwrl costs 367.028 real_cost = 334.519 CIRCLE_TS3-scwrl costs 371.378 real_cost = 330.241 CIRCLE_TS2-scwrl costs 431.652 real_cost = 325.827 CIRCLE_TS1-scwrl costs 337.892 real_cost = 337.515 Bilab-ENABLE_TS5-scwrl costs 362.091 real_cost = 386.393 Bilab-ENABLE_TS4-scwrl costs 375.182 real_cost = 379.108 Bilab-ENABLE_TS3-scwrl costs 415.804 real_cost = 377.848 Bilab-ENABLE_TS2-scwrl costs 357.939 real_cost = 367.788 Bilab-ENABLE_TS1-scwrl costs 368.995 real_cost = 394.293 BayesHH_TS1-scwrl costs 375.061 real_cost = 340.256 ABIpro_TS5-scwrl costs 336.06 real_cost = 309.958 ABIpro_TS4-scwrl costs 360.986 real_cost = 337.76 ABIpro_TS3-scwrl costs 354.927 real_cost = 331.959 ABIpro_TS2-scwrl costs 362.983 real_cost = 352.586 ABIpro_TS1-scwrl costs 356.591 real_cost = 344.992 3Dpro_TS5-scwrl costs 369.795 real_cost = 333.279 3Dpro_TS4-scwrl costs 358.865 real_cost = 339.215 3Dpro_TS3-scwrl costs 362.983 real_cost = 352.586 3Dpro_TS2-scwrl costs 368.017 real_cost = 327.31 3Dpro_TS1-scwrl costs 356.591 real_cost = 344.992 3D-JIGSAW_TS4-scwrl costs 468.543 real_cost = 356.714 3D-JIGSAW_TS3-scwrl costs 348.654 real_cost = 322.262 3D-JIGSAW_TS2-scwrl costs 456.02 real_cost = 378.612 3D-JIGSAW_TS1-scwrl costs 450.871 real_cost = 367.159 3D-JIGSAW_RECOM_TS5-scwrl costs 462.956 real_cost = 355.579 3D-JIGSAW_RECOM_TS4-scwrl costs 469.166 real_cost = 356.746 3D-JIGSAW_RECOM_TS3-scwrl costs 490.221 real_cost = 356.136 3D-JIGSAW_RECOM_TS2-scwrl costs 476.173 real_cost = 375.873 3D-JIGSAW_RECOM_TS1-scwrl costs 493.185 real_cost = 377.183 3D-JIGSAW_POPULUS_TS5-scwrl costs 411.949 real_cost = 332.488 3D-JIGSAW_POPULUS_TS4-scwrl costs 325.491 real_cost = 313.145 3D-JIGSAW_POPULUS_TS3-scwrl costs 385.687 real_cost = 330.761 3D-JIGSAW_POPULUS_TS2-scwrl costs 340.946 real_cost = 319.628 3D-JIGSAW_POPULUS_TS1-scwrl costs 332.842 real_cost = 340.513 try9-tweak2.pdb.gz costs 312.463 real_cost = 328.488 try9-tweak2.gromacs0.repack-nonPC.pdb.gz costs 309.018 real_cost = 332.979 try9-tweak2.gromacs0.pdb.gz costs 314.76 real_cost = 334.006 try9-tweak1.pdb.gz costs 301.459 real_cost = 326.456 try9-tweak1.gromacs0.repack-nonPC.pdb.gz costs 303.846 real_cost = 328.41 try9-tweak1.gromacs0.pdb.gz costs 309.425 real_cost = 329.342 try5-tweak3.pdb.gz costs 309.792 real_cost = 320.085 try5-tweak3.gromacs0.repack-nonPC.pdb.gz costs 315.151 real_cost = 322.606 try5-tweak3.gromacs0.pdb.gz costs 323.242 real_cost = 322.934 try5-tweak2.pdb.gz costs 299.587 real_cost = 320.131 try5-tweak2.gromacs0.repack-nonPC.pdb.gz costs 307.738 real_cost = 327.526 try5-tweak2.gromacs0.pdb.gz costs 316.493 real_cost = 326.451 chimera-M1-S106-10+HIS.pdb.gz costs 283.992 real_cost = 325.512 chimera-5-3.pdb.gz costs 265.698 real_cost = 321.304 T0352.try9-opt2.repack-nonPC.pdb.gz costs 267.734 real_cost = 325.656 T0352.try9-opt2.pdb.gz costs 267.514 real_cost = 328.581 T0352.try9-opt2.gromacs0.repack-nonPC.pdb.gz costs 284.328 real_cost = 329.244 T0352.try9-opt2.gromacs0.pdb.gz costs 283.185 real_cost = 328.732 T0352.try9-opt1.pdb.gz costs 273.963 real_cost = 327.387 T0352.try9-opt1-scwrl.pdb.gz costs 282.096 real_cost = 326.747 T0352.try8-opt2.repack-nonPC.pdb.gz costs 258.601 real_cost = 305.85 T0352.try8-opt2.pdb.gz costs 257.986 real_cost = 306.213 T0352.try8-opt2.gromacs0.repack-nonPC.pdb.gz costs 271.298 real_cost = 300.711 T0352.try8-opt2.gromacs0.pdb.gz costs 270.561 real_cost = 301.29 T0352.try8-opt1.pdb.gz costs 262.977 real_cost = 306.34 T0352.try8-opt1-scwrl.pdb.gz costs 269.066 real_cost = 304.44 T0352.try7-opt2.repack-nonPC.pdb.gz costs 260.839 real_cost = 302.829 T0352.try7-opt2.pdb.gz costs 257.294 real_cost = 307.594 T0352.try7-opt2.gromacs0.repack-nonPC.pdb.gz costs 280.269 real_cost = 305.932 T0352.try7-opt2.gromacs0.pdb.gz costs 279.114 real_cost = 306.25 T0352.try7-opt1.pdb.gz costs 263.584 real_cost = 306.601 T0352.try7-opt1-scwrl.pdb.gz costs 272.875 real_cost = 306.294 T0352.try6-opt2.repack-nonPC.pdb.gz costs 256.844 real_cost = 321.259 T0352.try6-opt2.pdb.gz costs 253.252 real_cost = 321.889 T0352.try6-opt2.gromacs0.repack-nonPC.pdb.gz costs 286.693 real_cost = 320.774 T0352.try6-opt2.gromacs0.pdb.gz costs 285.353 real_cost = 321.586 T0352.try6-opt1.pdb.gz costs 255.952 real_cost = 321.307 T0352.try6-opt1-scwrl.pdb.gz costs 264.985 real_cost = 320.485 T0352.try5-opt2.repack-nonPC.pdb.gz costs 249.318 real_cost = 320.478 T0352.try5-opt2.pdb.gz costs 243.716 real_cost = 321.449 T0352.try5-opt2.gromacs0.repack-nonPC.pdb.gz costs 275.43 real_cost = 316.91 T0352.try5-opt2.gromacs0.pdb.gz costs 272.419 real_cost = 318.027 T0352.try5-opt1.pdb.gz costs 247.047 real_cost = 323.992 T0352.try5-opt1-scwrl.pdb.gz costs 259.774 real_cost = 322.145 T0352.try4-opt2.repack-nonPC.pdb.gz costs 233.356 real_cost = 298.176 T0352.try4-opt2.pdb.gz costs 229.506 real_cost = 298.108 T0352.try4-opt2.gromacs0.repack-nonPC.pdb.gz costs 240.32 real_cost = 292.367 T0352.try4-opt2.gromacs0.pdb.gz costs 240.068 real_cost = 293.824 T0352.try4-opt1.pdb.gz costs 236.687 real_cost = 298.344 T0352.try4-opt1-scwrl.pdb.gz costs 239.076 real_cost = 297.976 T0352.try3-opt2.repack-nonPC.pdb.gz costs 274.319 real_cost = 313.97 T0352.try3-opt2.pdb.gz costs 271.737 real_cost = 313.846 T0352.try3-opt2.gromacs0.repack-nonPC.pdb.gz costs 284.856 real_cost = 312.411 T0352.try3-opt2.gromacs0.pdb.gz costs 281.863 real_cost = 312.104 T0352.try3-opt1.pdb.gz costs 281.806 real_cost = 315.264 T0352.try3-opt1-scwrl.pdb.gz costs 288.652 real_cost = 315.481 T0352.try2-opt2.repack-nonPC.pdb.gz costs 247.332 real_cost = 314.127 T0352.try2-opt2.pdb.gz costs 244.094 real_cost = 310.922 T0352.try2-opt2.gromacs0.repack-nonPC.pdb.gz costs 260.502 real_cost = 315.963 T0352.try2-opt2.gromacs0.pdb.gz costs 259.21 real_cost = 312.652 T0352.try2-opt1.pdb.gz costs 251.284 real_cost = 312.682 T0352.try2-opt1-scwrl.pdb.gz costs 252.533 real_cost = 312.178 T0352.try11-opt2.repack-nonPC.pdb.gz costs 257.975 real_cost = 319.846 T0352.try11-opt2.pdb.gz costs 255.668 real_cost = 319.722 T0352.try11-opt2.gromacs0.repack-nonPC.pdb.gz costs 271.458 real_cost = 318.756 T0352.try11-opt2.gromacs0.pdb.gz costs 270.416 real_cost = 319.355 T0352.try11-opt1.pdb.gz costs 260.564 real_cost = 320.198 T0352.try11-opt1-scwrl.pdb.gz costs 269.691 real_cost = 319.062 T0352.try10-opt2.repack-nonPC.pdb.gz costs 261.2 real_cost = 319.696 T0352.try10-opt2.pdb.gz costs 259.189 real_cost = 320.278 T0352.try10-opt2.gromacs0.repack-nonPC.pdb.gz costs 278.005 real_cost = 319.696 T0352.try10-opt2.gromacs0.pdb.gz costs 274.947 real_cost = 319.992 T0352.try10-opt1.pdb.gz costs 265.625 real_cost = 317.497 T0352.try10-opt1-scwrl.pdb.gz costs 272.632 real_cost = 318.841 T0352.try1-opt2.repack-nonPC.pdb.gz costs 250.983 real_cost = 296.57 T0352.try1-opt2.pdb.gz costs 247.582 real_cost = 297.574 T0352.try1-opt2.gromacs0.repack-nonPC.pdb.gz costs 265.384 real_cost = 293.507 T0352.try1-opt2.gromacs0.pdb.gz costs 264.208 real_cost = 294.343 T0352.try1-opt1.pdb.gz costs 253.582 real_cost = 296.987 T0352.try1-opt1-scwrl.pdb.gz costs 254.709 real_cost = 296.487 ../model5.ts-submitted costs 247.619 real_cost = 297.848 ../model4.ts-submitted costs 260.5 real_cost = 315.965 ../model3.ts-submitted costs 229.529 real_cost = 298.127 ../model2.ts-submitted costs 243.811 real_cost = 321.49 ../model1.ts-submitted costs 255.402 real_cost = 319.725 align5 costs 990.189 real_cost = 457.09 align4 costs 630.257 real_cost = 295.394 align3 costs 1083.86 real_cost = 392.359 align2 costs 934.238 real_cost = 416.448 align1 costs 820.476 real_cost = 365.648 T0352.try1-opt2.pdb costs 247.582 real_cost = 297.574 model5-scwrl costs 247.619 real_cost = 297.848 model4-scwrl costs 260.5 real_cost = 315.965 model3-scwrl costs 229.529 real_cost = 298.127 model2-scwrl costs 243.811 real_cost = 321.49 model1-scwrl costs 255.29 real_cost = 319.725 T0352 costs 439.356 real_cost = -895 # command:CPU_time= 145.773 sec, elapsed time= 208.003 sec) # command:rm -f sort.tmp /projects/compbio/bin/sorttbl real_cost < decoys/evaluate.predburial.rdb > sort.tmp mv -f sort.tmp decoys/evaluate.predburial.rdb mv -f decoys/evaluate.predburial.pretty decoys/evaluate.predburial.pretty.old /projects/compbio/experiments/protein-predict/casp7/scripts/prettyscore -terse -targpfx -decpoint < decoys/evaluate.predburial.rdb > decoys/evaluate.predburial.pretty make[1]: Leaving directory `/projects/compbio/experiments/protein-predict/casp7/T0352'