Best Alignments for T0352

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1jpaA/T0352-1jpaA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jpaA/T0352-1jpaA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2934e+001.92e-04 d.144.1.7
1zd3A/T0352-1zd3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zd3A/T0352-1zd3A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.7207e+002.96e-06
1sz2A/T0352-1sz2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1sz2A/T0352-1sz2A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.1628e+015.95e-04
1tbmA/T0352-1tbmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tbmA/T0352-1tbmA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.2869e+013.87e-08 a.211.1.2
1zv1A/T0352-1zv1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zv1A/T0352-1zv1A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.3009e+016.05e-06
1jhgA/T0352-1jhgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jhgA/T0352-1jhgA-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6257e+011.84e+00 1jhgA a.4.12.1
1zboA/T0352-1zboA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zboA/T0352-1zboA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6859e+014.04e-06
2furA/T0352-2furA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2furA/T0352-2furA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.9132e+014.19e-05
2c4jA/T0352-2c4jA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2c4jA/T0352-2c4jA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.0982e+012.36e-03
1vj5A/T0352-1vj5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vj5A/T0352-1vj5A-t06-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 2.2443e+016.92e-06 c.108.1.2
c.69.1.11

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001