# List of top-scoring protein chains for t2k-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1h6zA 913 1.09e+00 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1iuhA 198 2.08e+00 d.61.1.2 83711 1m6jA 261 2.41e+00 c.1.1.1 78693 1m2kA 249 2.95e+00 c.31.1.5 84754 1jpaA 312 5.57e+00 d.144.1.7 67011 1jsxA 207 9.61e+00 c.66.1.20 71846 2fqmA 75 9.71e+00 1w36C 1122 1.04e+01 1pzqA 60 1.07e+01 a.34.3.1 95466 1ewqA 765 1.08e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1iciA 256 1.15e+01 1iciA c.31.1.5 62266 1kfd 605 1.17e+01 1xwl c.55.3.5,e.8.1.1 33694,42987 1tuaA 191 1.26e+01 d.51.1.1,d.51.1.1 107321,107322 1s7jA 262 1.40e+01 d.21.1.2 98647 1yzxA 226 1.49e+01 1myo 118 1.58e+01 2myo d.211.1.1 19174 2furA 209 1.58e+01 1ooeA 236 1.59e+01 c.2.1.2 87196 3fapB 94 1.72e+01 1nsgB a.24.7.1 16612 1t6aA 126 1.75e+01 d.129.8.1 106555 1cr6B 554 1.79e+01 1cr6B c.69.1.11,c.108.1.2 34688,43338 1n2fA 142 1.87e+01 d.227.1.1 79853 1vj5A 555 1.89e+01 c.108.1.2,c.69.1.11 100799,100800 1i9gA 280 1.95e+01 c.66.1.13 62090 2ar0A 541 2.07e+01 1fapB 95 2.10e+01 1nsgB a.24.7.1 16618 1w1oA 534 2.13e+01 d.58.32.4,d.145.1.1 109071,109072 1zd3A 555 2.16e+01 1v8eA 224 2.23e+01 2myo 118 2.27e+01 2myo d.211.1.1 19175 1gwcA 230 2.31e+01 a.45.1.1,c.47.1.5 70660,70661 2mev2 256 2.42e+01 1aym2 2fywA 267 2.45e+01 1vd6A 224 2.54e+01 1xkmB 25 2.70e+01 1kblA 873 2.77e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1h2vC 771 2.83e+01 a.118.1.14,a.118.1.14,a.118.1.14 76592,76593,76594 2fmcA 82 2.89e+01 1eia 207 2.94e+01 1eia a.28.3.1,a.73.1.1 16951,18331 1e08A 371 2.94e+01 i.4.1.1 45914 1hfeL 421 3.01e+01 1fehA c.96.1.1,d.58.1.5 36018,39001 2esnA 310 3.03e+01 2db0A 253 3.18e+01 1jmxA 494 3.45e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 2a6cA 83 3.46e+01 1bp1 456 3.50e+01 1bp1 d.83.1.1,d.83.1.1 40026,40027 1ufaA 520 3.54e+01 a.8.3.3,c.6.2.4 99329,99330 1ewfA 456 3.57e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 1z2nX 324 3.63e+01 2cdqA 510 3.64e+01 1nsgB 94 3.75e+01 1nsgB a.24.7.1 16613 1gqeA 365 3.81e+01 e.38.1.1 70351 1zccA 248 3.85e+01 1thg 544 4.06e+01 1thg c.69.1.17 34763 1dik 874 4.16e+01 1dik c.1.12.2,c.8.1.1,d.142.1.5 29304,30702,41572 1fb6A 105 4.26e+01 1thx c.47.1.1 32739 1x6vA 630 4.32e+01 1bf5A 545 4.32e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 2gsfA 373 4.34e+01 2eiaB 206 4.70e+01 1eia a.28.3.1,a.73.1.1 16950,18330 1gnc 178 4.79e+01 1bgc a.26.1.1 16821 1d1qA 161 4.88e+01 1dg9A c.44.1.1 32642 1jhnA 424 4.96e+01 b.104.1.1,b.29.1.12 66722,70060 1aueA 100 4.98e+01 1nsgB a.24.7.1 16615 1ni3A 392 5.01e+01 c.37.1.8,d.15.10.2 80531,80532 1oyjA 231 5.12e+01 a.45.1.1,c.47.1.5 87597,87598 2acvA 463 5.26e+01 1knvA 293 5.29e+01 c.52.1.7 68707 1aikN 38 5.38e+01 1aikN h.3.2.1 45723 2afwA 329 5.40e+01 1d4bA 122 5.42e+01 1d4bA d.15.2.1 37638 1vqsA 116 5.52e+01 1qrvB 73 5.90e+01 a.21.1.1 16426 1q4uA 151 5.94e+01 d.38.1.5 95828 1x4tA 92 5.97e+01 1bj8 109 6.07e+01 1bquA b.1.2.1 22070 1w2fA 276 6.31e+01 d.143.1.3 109125 2fy6A 143 6.34e+01 1t7sA 137 6.49e+01 a.7.7.1 106636 1mjhA 162 6.52e+01 1mjhA c.26.2.4 31639 1t98A 287 6.54e+01 1ka9H 200 6.79e+01 c.23.16.1 77308 1r4wA 226 6.81e+01 c.47.1.13 97050 1f7uA 607 6.92e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1b3qA 379 6.97e+01 1b3qA a.30.2.1,b.40.7.1,d.122.1.3 16993,25454,41112 1scmA 60 7.14e+01 1wdcA 1tbmA 326 7.26e+01 a.211.1.2 106744 1cd9C 175 7.38e+01 1bgc a.26.1.1 16816 1jmtB 28 7.43e+01 1r092 262 7.46e+01 1aym2 1a3c 181 7.47e+01 1a3c c.61.1.1 34095 1o4vA 183 7.57e+01 c.23.8.1 86628 1c7nA 399 7.69e+01 1d2fA c.67.1.3 34413 2a3dA 73 7.71e+01 2a3dA k.9.1.1 46424 1bg2 325 7.85e+01 1bg2 c.37.1.9 32189 1m7vA 363 7.87e+01 d.174.1.1 78748 1lvfA 110 7.89e+01 a.47.2.1 74280 1zv1A 65 7.98e+01 1br1B 150 8.09e+01 1wdcC a.39.1.5 17309 1yozA 116 8.12e+01 2b7yA 182 8.47e+01 1n1fA 159 8.48e+01 a.26.1.3 79803 2g62A 325 8.50e+01 1im5A 180 8.53e+01 c.33.1.3 66211 1dvkA 173 8.55e+01 1dvkA a.72.1.1 18319 1rypB 250 8.86e+01 1rypB d.153.1.4 41933 1y2oA 250 8.89e+01 1koqA 253 9.00e+01 2cba b.74.1.1 27964