# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2myo 118 6.12e-01 2myo d.211.1.1 19175 6gsvA 217 6.28e-01 1b8xA a.45.1.1,c.47.1.5 17633,32925 1myo 118 7.60e-01 2myo d.211.1.1 19174 2fiyA 309 9.40e-01 1ihp 438 1.47e+00 1ihp c.60.1.2 33993 1sz2A 332 1.64e+00 2c4jA 218 2.05e+00 1q18A 332 2.05e+00 c.55.1.7,c.55.1.7 104470,104471 2mev2 256 2.09e+00 1aym2 1xw5A 217 2.22e+00 1tbmA 326 2.26e+00 a.211.1.2 106744 1trrA 107 2.51e+00 1jhgA a.4.12.1 19017 1cr6B 554 2.86e+00 1cr6B c.69.1.11,c.108.1.2 34688,43338 1eemA 241 3.32e+00 1eemA a.45.1.1,c.47.1.5 17717,33011 1y3nA 490 3.75e+00 1ad3A 452 4.11e+00 1ad3A c.82.1.1 35335 1zv1A 65 4.26e+00 1bd8 156 4.33e+00 1bd8 d.211.1.1 19157 1b4pA 217 4.81e+00 a.45.1.1,c.47.1.5 83158,83159 2wrpR 107 4.86e+00 1jhgA a.4.12.1 19010 1eia 207 5.00e+00 1eia a.28.3.1,a.73.1.1 16951,18331 1jpaA 312 5.05e+00 d.144.1.7 67011 1noyA 388 5.87e+00 1clqA c.55.3.5 33713 1x1fA 149 6.15e+00 1jhgA 101 6.60e+00 1jhgA a.4.12.1 19009 1h6zA 913 7.00e+00 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1m3uA 264 7.03e+00 c.1.12.8 84784 2gsvA 80 7.15e+00 1ohfA 644 7.66e+00 b.121.4.8 93014 1v1rA 400 7.79e+00 c.36.1.11 108272 1qfxA 460 8.22e+00 1qfxA c.60.1.2 33994 1zd3A 555 8.26e+00 1f7uA 607 8.77e+00 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1z6uA 150 9.11e+00 1efcA 393 9.39e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25680,25720,32113 1vj5A 555 9.42e+00 c.108.1.2,c.69.1.11 100799,100800 1nd7A 374 9.86e+00 d.148.1.1 91817 2ctoA 93 1.02e+01 1jb0I 38 1.03e+01 1jb0I f.23.17.1 62826 2fmcA 82 1.10e+01 1rcsA 105 1.12e+01 1jhgA a.4.12.1 19025 1nozA 388 1.13e+01 1clqA c.55.3.5 33715 1w1oA 534 1.17e+01 d.58.32.4,d.145.1.1 109071,109072 1efuA 385 1.24e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25682,25722,32115 1x7yA 400 1.26e+01 1x74A 360 1.28e+01 1ituA 369 1.32e+01 c.1.9.7 71423 1r4wA 226 1.38e+01 c.47.1.13 97050 1sszA 34 1.42e+01 j.35.1.1 105999 1kpsB 171 1.58e+01 a.118.12.1 68787 2b1eA 564 1.71e+01 1zboA 210 1.72e+01 1p4dA 330 1.73e+01 d.89.1.5 94101 1x91A 153 1.74e+01 1fg7A 356 1.76e+01 1gewA c.67.1.1 59819 1hdiA 413 1.81e+01 16pk c.86.1.1 60964 2furA 209 1.85e+01 1ufaA 520 1.87e+01 a.8.3.3,c.6.2.4 99329,99330 2g6tA 306 1.88e+01 1n1jA 93 1.90e+01 a.22.1.3 79813 1m6jA 261 1.93e+01 c.1.1.1 78693 1ycsB 239 1.93e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 2db0A 253 2.01e+01 1gewA 356 2.05e+01 1gewA c.67.1.1 60470 1llmC 88 2.17e+01 g.37.1.1,g.37.1.1 91059,91060 1w07A 659 2.26e+01 1h2vC 771 2.38e+01 a.118.1.14,a.118.1.14,a.118.1.14 76592,76593,76594 1qwoA 442 2.39e+01 c.60.1.2 104620 1x6vA 630 2.44e+01 1x6iA 91 2.44e+01 1skf 262 2.47e+01 1skf e.3.1.1 42684 1es5A 262 2.49e+01 1skf e.3.1.1 42679 1ni3A 392 2.52e+01 c.37.1.8,d.15.10.2 80531,80532 1xioA 261 2.53e+01 1esiA 262 2.54e+01 1skf e.3.1.1 42682 1etu 394 2.61e+01 1efcA c.37.1.8 64737 2afwA 329 2.61e+01 1gt8D 1025 2.79e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70433,70434,70435,70436,70437 1z2nX 324 2.89e+01 1i9gA 280 2.95e+01 c.66.1.13 62090 1yy7A 213 3.08e+01 1c7nA 399 3.17e+01 1d2fA c.67.1.3 34413 1bf5A 545 3.38e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1pq1A 196 3.47e+01 f.1.4.1 94986 2fqmA 75 3.52e+01 1fhuA 320 3.53e+01 1fhuA c.1.11.2,d.54.1.1 29234,38878 1e08A 371 3.57e+01 i.4.1.1 45914 1es2A 262 3.59e+01 1skf e.3.1.1 42680 1jmtB 28 3.61e+01 1zrzA 364 3.70e+01 1jk8B 190 3.78e+01 1iakB b.1.1.2,d.19.1.1 63147,63148 1aisB 200 3.99e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 2gsfA 373 4.25e+01 1h32A 261 4.27e+01 a.3.1.8,a.3.1.8 76618,76619 1rkd 309 4.32e+01 1rkd c.72.1.1 34928 1a1iA 90 4.35e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1xmeA 568 4.43e+01 1ewfA 456 4.69e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 2lefA 86 4.69e+01 2lefA a.21.1.1 16433 1w36C 1122 4.85e+01 1mp8A 281 4.86e+01 d.144.1.7 91384 1yozA 116 4.88e+01 1sq5A 308 5.02e+01 c.37.1.6 105882 1fi2A 201 5.11e+01 1fi2A b.82.1.2 59845 1g2fC 90 5.15e+01 k.12.1.1 60222 1fjxA 327 5.20e+01 6mhtA c.66.1.26 34228 1bp1 456 5.35e+01 1bp1 d.83.1.1,d.83.1.1 40026,40027 1m48A 133 5.35e+01 a.26.1.2 74443 1a1hA 90 5.40e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 2aheA 267 5.43e+01 1s72I 162 5.43e+01 a.4.7.1 105328 1o5hA 214 5.45e+01 a.191.1.1 92497 2dg5A 366 5.48e+01 2fywA 267 5.50e+01 1otsA 465 5.51e+01 f.20.1.1 87415 1whrA 124 5.55e+01 6mhtA 327 5.57e+01 6mhtA c.66.1.26 34226 1ut7A 171 5.57e+01 b.143.1.1 99906 1gulA 222 5.66e+01 1pgtA a.45.1.1,c.47.1.5 17675,32969 2esnA 310 5.66e+01 1br1B 150 5.75e+01 1wdcC a.39.1.5 17309 1zaaC 87 5.79e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 2occH 85 5.82e+01 2occH a.51.1.1 17796 1aayA 90 5.90e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1w7lA 422 5.98e+01 c.67.1.1 109226 3mhtA 327 6.10e+01 6mhtA c.66.1.26 34234 1ulyA 192 6.11e+01 1t5oA 351 6.26e+01 c.124.1.5 106459 1qrjB 199 6.29e+01 1qrjB a.28.3.1 16952 2iu5A 195 6.30e+01 2es9A 115 6.33e+01 2et1A 201 6.35e+01 2fpmA 322 6.43e+01 1kblA 873 6.46e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1v2dA 381 6.56e+01 c.67.1.1 108281 2c7pA 327 6.67e+01 2aclB 244 6.79e+01 1bj8 109 6.82e+01 1bquA b.1.2.1 22070 1htxA 32 6.87e+01 1qfdA g.3.2.1 61261 1mgpA 313 6.89e+01 c.119.1.1 79098 1ozhA 566 6.93e+01 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1nkl 78 6.95e+01 1nkl a.64.1.1 18140 1x8vA 455 7.00e+01 1ewqA 765 7.03e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1u08A 386 7.10e+01 c.67.1.1 107543 1hp4A 512 7.11e+01 1hp4A c.1.8.6,d.92.2.1 61111,61112 1hp5A 512 7.12e+01 1hp4A c.1.8.6,d.92.2.1 61113,61114 1hmy 327 7.14e+01 6mhtA c.66.1.26 34229 1jakA 512 7.21e+01 c.1.8.6,d.92.2.1 66472,66473 1vqoI 162 7.26e+01 1yzxA 226 7.30e+01 1wjgA 137 7.34e+01 1zq9A 285 7.35e+01 1inzA 148 7.42e+01 1eduA a.118.9.1 62610 1h5zA 455 7.42e+01 a.104.1.1 90622 1ea1A 455 7.59e+01 1ea1A a.104.1.1 18970 1e9xA 455 7.61e+01 1ea1A a.104.1.1 18969 1m98A 317 7.63e+01 a.175.1.1,d.17.4.6 78866,78867 1c75A 71 7.70e+01 451c a.3.1.1 15796 2bemA 170 7.70e+01 2ccmA 191 7.77e+01 1fhvA 323 7.78e+01 1fhuA c.1.11.2,d.54.1.1 29235,38879 1r6wA 322 7.81e+01 c.1.11.2,d.54.1.1 97165,97166 1fpoA 171 7.84e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 1s7jA 262 7.89e+01 d.21.1.2 98647 1a1gA 90 7.99e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 2eiaB 206 8.05e+01 1eia a.28.3.1,a.73.1.1 16950,18330 1tkeA 224 8.16e+01 1sheA 103 8.24e+01 d.274.1.1 105551 1tqyB 415 8.25e+01 c.95.1.1,c.95.1.1 107247,107248 1es4A 262 8.28e+01 1skf e.3.1.1 42683 1mzbA 136 8.33e+01 a.4.5.42 91497 1fxtA 149 8.33e+01 d.20.1.1 65055 1y8oA 419 8.42e+01 1zzmA 259 8.46e+01 1d8wA 426 8.55e+01 1de5A c.1.15.2 29394 1fzyA 149 8.62e+01 d.20.1.1 65072 1fsu 492 8.69e+01 1auk c.76.1.2 35032 1u13A 455 8.70e+01 a.104.1.1 107578 1d6gA 47 8.70e+01 1d6gA g.33.1.1 44976 1n1jB 97 8.79e+01 a.22.1.3 79814 2gdjA 264 8.81e+01