# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sz2A 332 2.13e-01 1jpaA 312 9.61e-01 d.144.1.7 67011 2c4jA 218 1.66e+00 1zboA 210 1.69e+00 1zv1A 65 2.36e+00 2ctoA 93 2.45e+00 2fiyA 309 2.53e+00 1eemA 241 2.94e+00 1eemA a.45.1.1,c.47.1.5 17717,33011 1jhgA 101 3.16e+00 1jhgA a.4.12.1 19009 1mzbA 136 3.44e+00 a.4.5.42 91497 2iu5A 195 4.43e+00 1b4pA 217 4.59e+00 a.45.1.1,c.47.1.5 83158,83159 1jb0I 38 5.95e+00 1jb0I f.23.17.1 62826 2gsvA 80 6.27e+00 2fu4A 83 6.29e+00 1qfxA 460 6.92e+00 1qfxA c.60.1.2 33994 1kpsB 171 7.54e+00 a.118.12.1 68787 1qwoA 442 7.91e+00 c.60.1.2 104620 1ufaA 520 8.05e+00 a.8.3.3,c.6.2.4 99329,99330 1zd3A 555 8.06e+00 1zejA 293 8.41e+00 1bd8 156 8.67e+00 1bd8 d.211.1.1 19157 1m2kA 249 9.49e+00 c.31.1.5 84754 1sq5A 308 9.69e+00 c.37.1.6 105882 2aheA 267 1.02e+01 1sszA 34 1.13e+01 j.35.1.1 105999 1x74A 360 1.20e+01 1w1oA 534 1.23e+01 d.58.32.4,d.145.1.1 109071,109072 2esnA 310 1.24e+01 1jk8B 190 1.26e+01 1iakB b.1.1.2,d.19.1.1 63147,63148 2gdjA 264 1.38e+01 2a9iA 113 1.62e+01 1i9gA 280 2.09e+01 c.66.1.13 62090 1x6vA 630 2.14e+01 1ab8A 220 2.16e+01 1azsA d.58.29.1 39414 1w07A 659 2.28e+01 1xo0A 324 2.32e+01 1es5A 262 2.37e+01 1skf e.3.1.1 42679 1z2nX 324 2.39e+01 2gsfA 373 2.45e+01 1zkeA 83 2.49e+01 1whrA 124 2.59e+01 2fpmA 322 2.61e+01 2dgkA 452 2.68e+01 1o5hA 214 2.72e+01 a.191.1.1 92497 1qwyA 291 2.74e+01 b.84.3.2 96509 2fqmA 75 2.74e+01 1m6kA 251 2.86e+01 e.3.1.1 78695 1iqrA 420 2.88e+01 a.99.1.1,c.28.1.1 66275,66276 1xrsA 516 2.95e+01 1z2uA 150 2.96e+01 1wovA 250 2.97e+01 1zq9A 285 3.02e+01 1rh9A 373 3.02e+01 1v4aA 440 3.05e+01 a.24.16.4,d.218.1.9 108350,108351 1wjgA 137 3.06e+01 1repC 251 3.14e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1tzvA 142 3.16e+01 a.79.1.1 107526 2g6tA 306 3.19e+01 1ssqA 267 3.20e+01 b.81.1.6 105993 1x91A 153 3.21e+01 2b7aA 293 3.21e+01 1xfsA 178 3.26e+01 d.129.3.5 109589 1f7uA 607 3.38e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1ohfA 644 3.39e+01 b.121.4.8 93014 1ogsA 497 3.71e+01 b.71.1.2,c.1.8.3 86997,86998 2a6hC 1119 3.72e+01 2ac3A 316 3.85e+01 1jmtB 28 4.05e+01 1iqcA 308 4.10e+01 a.3.1.5,a.3.1.5 66266,66267 1jakA 512 4.12e+01 c.1.8.6,d.92.2.1 66472,66473 1amuA 563 4.16e+01 1amuA e.23.1.1 43351 1gwuA 309 4.19e+01 a.93.1.1 83351 1n1jA 93 4.32e+01 a.22.1.3 79813 1ut7A 171 4.37e+01 b.143.1.1 99906 1vls 146 4.38e+01 1vls a.24.2.1 16532 1yzxA 226 4.39e+01 1pmmA 466 4.60e+01 c.67.1.6 94901 1k6iA 352 4.72e+01 c.2.1.2 68223 2afdA 88 4.72e+01 1no1A 126 4.73e+01 a.179.1.1 85913 1c52 131 4.74e+01 1c52 a.3.1.1 15810 1e6iA 121 4.89e+01 1b91A a.29.2.1 16969 1tn6B 437 4.91e+01 1yy7A 213 4.99e+01 2givA 295 5.11e+01 2fmcA 82 5.14e+01 1thg 544 5.25e+01 1thg c.69.1.17 34763 1ycsB 239 5.25e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 1xgkA 352 5.26e+01 2d3dA 88 5.28e+01 2gw6A 123 5.40e+01 2afwA 329 5.43e+01 1ux5A 411 5.48e+01 a.207.1.1 100144 1ewfA 456 5.52e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 1p8xA 344 5.63e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 1wteA 272 5.63e+01 1ytaA 180 5.69e+01 4hb1 108 5.95e+01 4hb1 k.8.1.1 46414 1qd9A 124 5.96e+01 1qu9A d.79.1.1 39758 1gcqC 70 6.06e+01 1gcpA b.34.2.1 60436 2bolA 314 6.07e+01 2fkzA 155 6.09e+01 1sheA 103 6.11e+01 d.274.1.1 105551 1p4cA 380 6.17e+01 c.1.4.1 94100 1gweA 503 6.20e+01 e.5.1.1 70667 1cojA 212 6.21e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 2fh1A 344 6.23e+01 2f7tA 227 6.27e+01 2ddfA 257 6.31e+01 1d6gA 47 6.32e+01 1d6gA g.33.1.1 44976 1vlbA 907 6.35e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1alvA 173 6.37e+01 1alvA a.39.1.8 17370 1fg7A 356 6.44e+01 1gewA c.67.1.1 59819 1d8wA 426 6.52e+01 1de5A c.1.15.2 29394 1pn0A 665 6.54e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1xioA 261 6.55e+01 1fpoA 171 6.61e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 1cfzA 162 6.61e+01 1cfzA c.56.1.1 33754 2bneA 241 6.62e+01 1i7dA 659 6.74e+01 1d6mA e.10.1.1 61886 1dciA 275 6.77e+01 1dciA c.14.1.3 30918 1j8mF 297 6.82e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1im8A 244 6.83e+01 c.66.1.14 66212 1z6uA 150 6.85e+01 1pq1A 196 6.85e+01 f.1.4.1 94986 1r6wA 322 6.88e+01 c.1.11.2,d.54.1.1 97165,97166 1w7lA 422 6.97e+01 c.67.1.1 109226 1m98A 317 6.97e+01 a.175.1.1,d.17.4.6 78866,78867 1yozA 116 6.98e+01 2end 138 7.05e+01 2end a.18.1.1 16400 1mp8A 281 7.07e+01 d.144.1.7 91384 1pa1A 310 7.13e+01 c.45.1.2 94404 1guxA 218 7.20e+01 1guxA a.74.1.3 18388 2b9sB 62 7.26e+01 1okcA 297 7.28e+01 f.42.1.1 93248 1n1fA 159 7.53e+01 a.26.1.3 79803 1di6A 195 7.56e+01 1di6A c.57.1.1 33863 1jeyA 609 7.65e+01 1jeqA b.131.1.1,c.62.1.3 90370,90371 1b8aA 438 7.67e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1u5dA 108 7.76e+01 2sqcA 631 7.82e+01 2sqcA a.102.4.2,a.102.4.2 18854,18855 1s5lX 50 7.84e+01 2afaA 425 7.85e+01 1jhdA 396 7.88e+01 b.122.1.3,c.26.1.5 66712,66713 1g5aA 628 7.92e+01 b.71.1.1,c.1.8.1 65152,65153 1zxkA 98 8.02e+01 1fzqA 181 8.04e+01 1hurA c.37.1.8 32060 1g291 372 8.32e+01 1g291 1rxqA 178 8.32e+01 a.213.1.1 105118 1mun 225 8.43e+01 1mun a.96.1.2 18744 1sqgA 429 8.46e+01 a.79.1.3,c.66.1.38 105912,105913 1zhcA 76 8.47e+01 1hdiA 413 8.50e+01 16pk c.86.1.1 60964 1xqsA 280 8.55e+01 1wqwA 235 8.64e+01 1qo7A 394 8.64e+01 1qo7A c.69.1.11 34697 1vi0A 206 8.65e+01 a.4.1.9,a.121.1.1 100720,100721 1acf 125 8.65e+01 3nul d.110.1.1 40882 2btvA 901 8.65e+01 2btvA e.28.1.1 43376 1kblA 873 8.86e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1v96A 149 8.90e+01 1ez0A 510 8.92e+01 1eyyA c.82.1.1 35385 1gjwA 637 8.95e+01 b.71.1.1,c.1.8.1 60582,60583 1z0wA 207 8.98e+01