# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sz2A 332 3.63e-01 2fiyA 309 6.40e-01 1jpaA 312 1.53e+00 d.144.1.7 67011 1jhgA 101 1.71e+00 1jhgA a.4.12.1 19009 2c4jA 218 2.42e+00 2gsvA 80 2.93e+00 1b4pA 217 4.12e+00 a.45.1.1,c.47.1.5 83158,83159 1zv1A 65 5.26e+00 1es5A 262 5.89e+00 1skf e.3.1.1 42679 1qwoA 442 6.63e+00 c.60.1.2 104620 1bd8 156 6.74e+00 1bd8 d.211.1.1 19157 1mzbA 136 6.79e+00 a.4.5.42 91497 1kpsB 171 7.00e+00 a.118.12.1 68787 1zd3A 555 7.36e+00 1zejA 293 7.50e+00 1zboA 210 8.13e+00 1eemA 241 8.41e+00 1eemA a.45.1.1,c.47.1.5 17717,33011 2iu5A 195 8.93e+00 1qfxA 460 1.15e+01 1qfxA c.60.1.2 33994 1jk8B 190 1.21e+01 1iakB b.1.1.2,d.19.1.1 63147,63148 1jb0I 38 1.22e+01 1jb0I f.23.17.1 62826 1kqfC 217 1.31e+01 f.21.1.1 72874 2ctoA 93 1.31e+01 2fmcA 82 1.36e+01 2a9iA 113 1.41e+01 1w1oA 534 1.45e+01 d.58.32.4,d.145.1.1 109071,109072 2aheA 267 1.54e+01 2gsfA 373 1.54e+01 1ohfA 644 1.62e+01 b.121.4.8 93014 1m3uA 264 1.75e+01 c.1.12.8 84784 2esnA 310 1.78e+01 2fu4A 83 1.81e+01 1rkd 309 1.87e+01 1rkd c.72.1.1 34928 1ufaA 520 1.87e+01 a.8.3.3,c.6.2.4 99329,99330 1x74A 360 2.00e+01 2b7aA 293 2.02e+01 1sszA 34 2.21e+01 j.35.1.1 105999 1tzvA 142 2.22e+01 a.79.1.1 107526 1z6uA 150 2.33e+01 1m2kA 249 2.43e+01 c.31.1.5 84754 1fg7A 356 2.44e+01 1gewA c.67.1.1 59819 2g6tA 306 2.46e+01 1xo0A 324 2.46e+01 1m6jA 261 2.55e+01 c.1.1.1 78693 1cojA 212 2.59e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 2f2gA 221 2.73e+01 2fkzA 155 2.75e+01 1ewfA 456 2.78e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 1okcA 297 2.81e+01 f.42.1.1 93248 1kblA 873 2.83e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1z2uA 150 2.87e+01 2g7gA 213 3.03e+01 1n1jA 93 3.08e+01 a.22.1.3 79813 1l9lA 74 3.10e+01 a.64.1.1 77827 1ytaA 180 3.13e+01 1iqcA 308 3.15e+01 a.3.1.5,a.3.1.5 66266,66267 1w7lA 422 3.19e+01 c.67.1.1 109226 1d8wA 426 3.51e+01 1de5A c.1.15.2 29394 1f7uA 607 3.54e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1jmtB 28 3.56e+01 1x6vA 630 3.64e+01 1whrA 124 3.73e+01 1g5aA 628 3.81e+01 b.71.1.1,c.1.8.1 65152,65153 1xmeA 568 3.83e+01 2fqmA 75 3.88e+01 1zkeA 83 3.89e+01 1xrsA 516 3.89e+01 1sq5A 308 3.91e+01 c.37.1.6 105882 1z2nX 324 3.97e+01 1sqgA 429 4.06e+01 a.79.1.3,c.66.1.38 105912,105913 1or7A 194 4.12e+01 a.4.13.2,a.177.1.1 87332,87333 1i9gA 280 4.26e+01 c.66.1.13 62090 2furA 209 4.35e+01 2afwA 329 4.43e+01 1im8A 244 4.46e+01 c.66.1.14 66212 2gdjA 264 4.68e+01 1ycsB 239 4.86e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 1hdiA 413 4.93e+01 16pk c.86.1.1 60964 1vls 146 4.97e+01 1vls a.24.2.1 16532 2fhfA 1083 4.97e+01 1x7yA 400 5.11e+01 2ddfA 257 5.12e+01 2g62A 325 5.16e+01 1sheA 103 5.28e+01 d.274.1.1 105551 1bf5A 545 5.37e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1yy7A 213 5.38e+01 1x6iA 91 5.41e+01 1xfsA 178 5.43e+01 d.129.3.5 109589 1fpoA 171 5.55e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 1sra 151 5.64e+01 1sra a.39.1.3 17190 4ubpC 570 5.76e+01 1ubpC b.92.1.1,c.1.9.2 28431,29053 1yzxA 226 5.81e+01 1tkeA 224 5.87e+01 1xioA 261 5.92e+01 1x91A 153 6.03e+01 1vp2A 208 6.04e+01 1v4aA 440 6.14e+01 a.24.16.4,d.218.1.9 108350,108351 1ssqA 267 6.15e+01 b.81.1.6 105993 1wjgA 137 6.17e+01 2fpmA 322 6.18e+01 1gwuA 309 6.34e+01 a.93.1.1 83351 1ut7A 171 6.43e+01 b.143.1.1 99906 2fywA 267 6.48e+01 1pa7A 130 6.61e+01 a.40.1.1 94410 1pn0A 665 6.68e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1h32A 261 6.70e+01 a.3.1.8,a.3.1.8 76618,76619 1ab8A 220 6.71e+01 1azsA d.58.29.1 39414 1alvA 173 6.75e+01 1alvA a.39.1.8 17370 1n8vA 112 6.78e+01 a.118.21.1 85457 1jakA 512 6.84e+01 c.1.8.6,d.92.2.1 66472,66473 1vlbA 907 6.84e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 2afaA 425 6.99e+01 1fi2A 201 7.02e+01 1fi2A b.82.1.2 59845 1ujcA 161 7.05e+01 2gw6A 123 7.18e+01 1yozA 116 7.26e+01 1d6gA 47 7.29e+01 1d6gA g.33.1.1 44976 1o5hA 214 7.42e+01 a.191.1.1 92497 1w07A 659 7.44e+01 1zq9A 285 7.64e+01 1z98A 281 7.65e+01 1thg 544 7.66e+01 1thg c.69.1.17 34763 1t7rA 269 7.70e+01 a.123.1.1 106635 2cwlA 302 7.71e+01 1r6wA 322 7.74e+01 c.1.11.2,d.54.1.1 97165,97166 1jb0A 755 7.76e+01 1jb0A f.29.1.1 62820 1fzqA 181 7.80e+01 1hurA c.37.1.8 32060 1ituA 369 7.80e+01 c.1.9.7 71423 1eyhA 144 7.82e+01 1eduA a.118.9.1 19214 1dp4A 435 7.82e+01 1dp4A c.93.1.1 35710 1jy2N 53 7.84e+01 h.1.8.1 67440 2et1A 201 8.01e+01 1ydiA 263 8.03e+01 1uvqB 198 8.03e+01 b.1.1.2,d.19.1.1 100064,100065 1m6kA 251 8.05e+01 e.3.1.1 78695 1ru3A 732 8.07e+01 e.26.1.3 97835 1x8vA 455 8.08e+01 1m2oA 768 8.12e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 2cwyA 94 8.26e+01 1rvgA 305 8.27e+01 c.1.10.2 97920 2a5dA 175 8.57e+01 1v2dA 381 8.61e+01 c.67.1.1 108281 1rypI 222 8.64e+01 d.153.1.4 41877 1vf6A 83 8.71e+01 a.194.1.1 100600 1mp8A 281 8.72e+01 d.144.1.7 91384