# List of top-scoring protein chains for t06-100-30-alpha-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1d8wA 426 2.29e-01 1de5A c.1.15.2 29394 1jhgA 101 2.63e-01 1jhgA a.4.12.1 19009 1zd3A 555 3.25e-01 1jpaA 312 3.57e-01 d.144.1.7 67011 1sz2A 332 9.41e-01 2a9iA 113 2.22e+00 2gsfA 373 2.46e+00 1zv1A 65 2.66e+00 1qfxA 460 4.07e+00 1qfxA c.60.1.2 33994 1yzxA 226 4.10e+00 2aheA 267 4.38e+00 1jb0I 38 4.46e+00 1jb0I f.23.17.1 62826 2ccmA 191 4.54e+00 1xioA 261 4.55e+00 1m48A 133 4.77e+00 a.26.1.2 74443 1x7yA 400 5.53e+00 1x6vA 630 5.92e+00 1kblA 873 6.13e+00 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 2ctoA 93 6.42e+00 1qd9A 124 6.74e+00 1qu9A d.79.1.1 39758 2fqmA 75 6.91e+00 2b7aA 293 7.35e+00 1jmtB 28 7.50e+00 1qu9A 128 7.58e+00 1qu9A d.79.1.1 39755 1w1oA 534 8.00e+00 d.58.32.4,d.145.1.1 109071,109072 1tzvA 142 8.01e+00 a.79.1.1 107526 2fiyA 309 8.01e+00 1es5A 262 8.15e+00 1skf e.3.1.1 42679 1ssqA 267 8.33e+00 b.81.1.6 105993 2bemA 170 8.42e+00 1jakA 512 8.52e+00 c.1.8.6,d.92.2.1 66472,66473 1cojA 212 8.61e+00 1avmA a.2.11.1,d.44.1.1 15737,38734 2gsvA 80 8.63e+00 2iu5A 195 9.55e+00 1x91A 153 9.59e+00 1w07A 659 9.71e+00 1ewfA 456 9.84e+00 1bp1 d.83.1.1,d.83.1.1 40024,40025 2afwA 329 9.98e+00 2fu4A 83 1.03e+01 2fmcA 82 1.04e+01 1m2kA 249 1.06e+01 c.31.1.5 84754 1im5A 180 1.07e+01 c.33.1.3 66211 1whrA 124 1.15e+01 1ufaA 520 1.25e+01 a.8.3.3,c.6.2.4 99329,99330 1z2nX 324 1.31e+01 1kpsB 171 1.38e+01 a.118.12.1 68787 1tqxA 227 1.39e+01 1jk8B 190 1.44e+01 1iakB b.1.1.2,d.19.1.1 63147,63148 1v4aA 440 1.46e+01 a.24.16.4,d.218.1.9 108350,108351 1i9gA 280 1.47e+01 c.66.1.13 62090 1sszA 34 1.47e+01 j.35.1.1 105999 1jhdA 396 1.54e+01 b.122.1.3,c.26.1.5 66712,66713 1bd8 156 1.56e+01 1bd8 d.211.1.1 19157 1iqcA 308 1.58e+01 a.3.1.5,a.3.1.5 66266,66267 2bjqA 345 1.61e+01 1r6wA 322 1.66e+01 c.1.11.2,d.54.1.1 97165,97166 1vls 146 1.74e+01 1vls a.24.2.1 16532 1rkd 309 1.77e+01 1rkd c.72.1.1 34928 1qwoA 442 1.79e+01 c.60.1.2 104620 1x8vA 455 1.88e+01 2c4jA 218 1.94e+01 1dciA 275 1.94e+01 1dciA c.14.1.3 30918 2fikA 287 1.96e+01 1mzbA 136 2.03e+01 a.4.5.42 91497 1ngzA 213 2.10e+01 b.1.1.1,b.1.1.2 80500,80501 1v96A 149 2.16e+01 1jy2N 53 2.17e+01 h.1.8.1 67440 1fpoA 171 2.19e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 2g19A 244 2.20e+01 1wmmA 145 2.20e+01 1j8mF 297 2.20e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1m93B 245 2.22e+01 1m2oA 768 2.26e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1ab8A 220 2.27e+01 1azsA d.58.29.1 39414 1p4cA 380 2.28e+01 c.1.4.1 94100 2gdjA 264 2.29e+01 1zq9A 285 2.34e+01 1rypH 205 2.40e+01 d.153.1.4 41876 1z2uA 150 2.41e+01 2ddfA 257 2.43e+01 2fgtA 417 2.43e+01 2fpmA 322 2.45e+01 2f2gA 221 2.48e+01 1t7rA 269 2.58e+01 a.123.1.1 106635 1zy9A 564 2.60e+01 2f2mA 113 2.61e+01 1x6oA 174 2.62e+01 b.34.5.2,b.40.4.5 109493,109494 1sheA 103 2.63e+01 d.274.1.1 105551 1p1mA 406 2.77e+01 b.92.1.4,c.1.9.9 87696,87697 1tueA 212 2.84e+01 c.37.1.20 107323 1p2fA 220 2.89e+01 a.4.6.1,c.23.1.1 87720,87721 1pa7A 130 2.89e+01 a.40.1.1 94410 1zboA 210 2.91e+01 1ppjF 110 2.95e+01 f.27.1.1 104262 2br9A 234 2.98e+01 1hfeL 421 3.00e+01 1fehA c.96.1.1,d.58.1.5 36018,39001 2f8mA 244 3.00e+01 2c2nA 339 3.01e+01 2cqsA 842 3.07e+01 1x6iA 91 3.14e+01 1sqgA 429 3.22e+01 a.79.1.3,c.66.1.38 105912,105913 1zanL 214 3.22e+01 2fb6A 117 3.24e+01 1alvA 173 3.26e+01 1alvA a.39.1.8 17370 1li5A 461 3.27e+01 a.27.1.1,c.26.1.1 73912,73913 2furA 209 3.37e+01 1im8A 244 3.42e+01 c.66.1.14 66212 1nddA 76 3.48e+01 1ubi d.15.1.1 37599 2fupA 168 3.64e+01 1z6uA 150 3.64e+01 1hdiA 413 3.66e+01 16pk c.86.1.1 60964 1m6jA 261 3.73e+01 c.1.1.1 78693 1p8xA 344 3.74e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 1m98A 317 3.77e+01 a.175.1.1,d.17.4.6 78866,78867 2a2pA 129 3.83e+01 2cvlA 124 3.85e+01 1dfwA 25 3.89e+01 j.35.1.1 46255 1fc3A 120 3.93e+01 1fc3A a.4.6.3 16237 1t8kA 77 3.95e+01 a.28.1.1 106666 2givA 295 3.96e+01 1px5A 349 4.03e+01 a.160.1.2,d.218.1.6 95277,95278 1jae 471 4.09e+01 1smd b.71.1.1,c.1.8.1 27773,28760 2ewcA 126 4.10e+01 1u5dA 108 4.13e+01 1dbwA 126 4.14e+01 1dbwA c.23.1.1 31095 2bfdA 400 4.22e+01 1h99A 224 4.23e+01 a.142.1.1,a.142.1.1 60814,60815 1tqyB 415 4.23e+01 c.95.1.1,c.95.1.1 107247,107248 2cwyA 94 4.27e+01 1zwwA 256 4.28e+01 1h3nA 878 4.40e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 2fh1A 344 4.44e+01 1um5L 219 4.49e+01 4hb1 108 4.50e+01 4hb1 k.8.1.1 46414 1mvlA 209 4.61e+01 c.34.1.1 85146 2f96A 224 4.61e+01 1z83A 196 4.66e+01 1pn0A 665 4.67e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 2a7mA 250 4.68e+01 1t92A 116 4.70e+01 1gdeA 389 4.71e+01 c.67.1.1 60456 1qh4A 380 4.77e+01 1qh4A a.83.1.1,d.128.1.2 18462,41197 1gjjA 168 4.83e+01 a.140.1.1,a.140.1.1 83291,83292 1eyhA 144 4.83e+01 1eduA a.118.9.1 19214 1xfsA 178 4.85e+01 d.129.3.5 109589 1t6uA 117 4.86e+01 a.24.22.1 106584 2f02A 323 4.86e+01 1fg7A 356 4.95e+01 1gewA c.67.1.1 59819 2dg5A 366 4.96e+01 1vi0A 206 5.05e+01 a.4.1.9,a.121.1.1 100720,100721 1ux5A 411 5.24e+01 a.207.1.1 100144 1no1A 126 5.32e+01 a.179.1.1 85913 2gboA 104 5.32e+01 1z98A 281 5.37e+01 1bf5A 545 5.39e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1thg 544 5.42e+01 1thg c.69.1.17 34763 1otsA 465 5.43e+01 f.20.1.1 87415 1rfeA 162 5.48e+01 1n0xL 215 5.55e+01 b.1.1.1,b.1.1.2 91532,91533 1v73A 342 5.82e+01 1y2kA 349 5.93e+01 1dp4A 435 5.94e+01 1dp4A c.93.1.1 35710 1q5zA 177 6.06e+01 a.196.1.1 95954 1zhcA 76 6.08e+01 2bneA 241 6.08e+01 1uxtA 501 6.09e+01 c.82.1.1 108125 1l9lA 74 6.22e+01 a.64.1.1 77827 2db9A 149 6.27e+01 1gwuA 309 6.29e+01 a.93.1.1 83351 1x1nA 524 6.31e+01 1xb4A 202 6.33e+01 1yozA 116 6.39e+01 1o8xA 146 6.40e+01 c.47.1.10 86681 1rzsA 61 6.40e+01 a.35.1.2 105139 2bbrA 195 6.41e+01 1q0gA 117 6.42e+01 a.24.22.1 104428 1ln4A 104 6.63e+01 d.68.4.1 74043 1mjuL 219 6.67e+01 b.1.1.1,b.1.1.2 91304,91305 1h4vB 421 6.70e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 2et1A 201 6.71e+01 1jmxA 494 6.71e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 2csgA 424 6.77e+01 2pia 321 6.83e+01 2pia b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 2esnA 310 6.85e+01 1fi2A 201 6.86e+01 1fi2A b.82.1.2 59845 1rmg 422 6.91e+01 1rmg b.80.1.3 28029 2ag4A 164 6.99e+01 1ykhA 108 7.01e+01 1guxA 218 7.07e+01 1guxA a.74.1.3 18388 2cmxA 118 7.08e+01 1n8vA 112 7.12e+01 a.118.21.1 85457 1d2mA 665 7.13e+01 1d2mA c.37.1.19,c.37.1.19 32417,32418 1tn6A 382 7.13e+01 2btvA 901 7.18e+01 2btvA e.28.1.1 43376 1kcvL 214 7.26e+01 b.1.1.1,b.1.1.2 72317,72318 1wjgA 137 7.30e+01 1q6hA 224 7.31e+01 d.26.1.1 95975 2b1eA 564 7.31e+01 1sr2A 116 7.34e+01 1z3eB 73 7.35e+01 1wr2A 238 7.35e+01 1u9iA 519 7.41e+01 1sq5A 308 7.41e+01 c.37.1.6 105882 1rypI 222 7.44e+01 d.153.1.4 41877 1mp8A 281 7.57e+01 d.144.1.7 91384 1qahA 136 7.60e+01 d.79.1.1 96338 1c52 131 7.60e+01 1c52 a.3.1.1 15810 1kf6D 119 7.64e+01 f.21.2.2 72400 2fkzA 155 7.65e+01 1j3mA 129 7.65e+01 d.129.7.1 103836 1n1bA 549 7.67e+01 a.102.4.1,a.128.1.3 79799,79800 2db0A 253 7.71e+01 2azeA 155 7.72e+01 1u14A 172 7.74e+01 c.51.4.3 107579 1dp7P 76 7.75e+01 1dp7P a.4.5.20 16159 1x74A 360 7.75e+01 2acvA 463 7.75e+01 1d4xG 126 7.80e+01 1d0nA d.109.1.1 59109 1hlvA 131 7.87e+01 a.4.1.7,a.4.1.7 65854,65855 1ngkA 128 7.92e+01 a.1.1.1 85673 1b06A 210 7.98e+01 1avmA a.2.11.1,d.44.1.1 15740,38737 1z67A 135 7.98e+01 2c5rA 67 7.99e+01 1z6oA 212 8.00e+01 1wqwA 235 8.05e+01 1ogiA 303 8.09e+01 b.43.4.2,c.25.1.1 92914,92915 1cfr 285 8.11e+01 1cfr c.52.1.7 33312 1po5A 476 8.15e+01 a.104.1.1 94963 1zkeA 83 8.17e+01 1qo7A 394 8.41e+01 1qo7A c.69.1.11 34697 1lwdA 413 8.43e+01 c.77.1.1 78265 1y97A 238 8.44e+01 1zrn 232 8.50e+01 1qq5A c.108.1.1 43323 1xqrA 296 8.51e+01 1vjkA 98 8.53e+01 d.15.3.1 108631 1t6cA 315 8.58e+01 c.55.1.8,c.55.1.8 106558,106559 1zc6A 305 8.78e+01 1z5zA 271 8.78e+01 2b4aA 138 8.95e+01 1geeA 261 8.97e+01 c.2.1.2 90509 1zin 217 8.98e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1hz4A 373 9.00e+01 a.118.8.2 65960