# List of top-scoring protein chains for T0352.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1m6jA 261 3.75e+00 c.1.1.1 78693 1ad3A 452 4.10e+00 1ad3A c.82.1.1 35335 1w36C 1122 6.04e+00 1myo 118 1.02e+01 2myo d.211.1.1 19174 1eptA 43 1.15e+01 5ptp b.47.1.2 25966 2fpoA 202 1.36e+01 1d1pA 160 1.49e+01 1dg9A c.44.1.1 32646 1d1qA 161 1.57e+01 1dg9A c.44.1.1 32642 1d2aA 160 1.57e+01 1dg9A c.44.1.1 32644 1jb0I 38 1.60e+01 1jb0I f.23.17.1 62826 2ftcG 145 2.08e+01 1trrA 107 2.23e+01 1jhgA a.4.12.1 19017 1w1oA 534 2.58e+01 d.58.32.4,d.145.1.1 109071,109072 2etrA 415 2.59e+01 1wkvA 389 2.78e+01 1zejA 293 2.83e+01 2fy6A 143 2.88e+01 2cigA 159 2.94e+01 1x6iA 91 3.17e+01 2f2uA 402 3.23e+01 1bp1 456 3.30e+01 1bp1 d.83.1.1,d.83.1.1 40026,40027 1a1hA 90 3.32e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 1ewfA 456 3.32e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 1bj8 109 3.35e+01 1bquA b.1.2.1 22070 1jk2A 90 3.38e+01 g.37.1.1,g.37.1.1,g.37.1.1 66787,66788,66789 1p47A 87 3.40e+01 g.37.1.1,g.37.1.1,g.37.1.1 87758,87759,87760 1zaaC 87 3.44e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1aayA 90 3.49e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1df7A 159 3.53e+01 3dfr c.71.1.1 34885 2fiyA 309 3.53e+01 1a1gA 90 3.56e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1a1iA 90 3.57e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1trnA 224 3.59e+01 5ptp b.47.1.2 26000 1h4wA 224 3.75e+01 b.47.1.2 65622 3wrp 108 3.82e+01 1jhgA a.4.12.1 19015 1jhgA 101 3.83e+01 1jhgA a.4.12.1 19009 2fmcA 82 3.85e+01 2wrpR 107 3.91e+01 1jhgA a.4.12.1 19010 1yzxA 226 3.93e+01 1troA 108 4.08e+01 1jhgA a.4.12.1 19011 1plc 99 4.11e+01 1plc b.6.1.1 22846 2fk0A 334 4.14e+01 1rcsA 105 4.20e+01 1jhgA a.4.12.1 19025 1tqyB 415 4.26e+01 c.95.1.1,c.95.1.1 107247,107248 1g2dC 90 4.31e+01 k.12.1.1 60220 1o4vA 183 4.39e+01 c.23.8.1 86628 1v9nA 360 4.45e+01 1ogqA 313 4.45e+01 c.10.2.8 86996 1fmtA 314 4.65e+01 1fmtA b.46.1.1,c.65.1.1 25758,34174 1aksA 125 4.65e+01 5ptp b.47.1.2 25969 2mev2 256 4.79e+01 1aym2 1jpaA 312 4.84e+01 d.144.1.7 67011 1vqyA 116 5.00e+01 1oowA 99 5.12e+01 b.6.1.1 93387 1z6xA 180 5.13e+01 2a10A 125 5.33e+01 1pvhA 201 5.37e+01 b.1.2.1,b.1.2.1 95165,95166 2acxA 576 5.39e+01 1sxeA 97 5.75e+01 a.60.1.1 106080 1g2fC 90 5.86e+01 k.12.1.1 60222 1ihp 438 5.96e+01 1ihp c.60.1.2 33993 2g6tA 306 6.15e+01 1uyrA 737 6.36e+01 c.14.1.4,c.14.1.4 100188,100189 1uyvA 737 6.42e+01 c.14.1.4,c.14.1.4 100204,100205 1s7jA 262 6.46e+01 d.21.1.2 98647 1w2xA 758 6.62e+01 c.14.1.4,c.14.1.4 109134,109135 1r4wA 226 6.65e+01 c.47.1.13 97050 1wvtA 172 6.73e+01 1od2A 805 6.93e+01 c.14.1.4,c.14.1.4 86821,86822 1w2wB 191 7.14e+01 1szeA 511 7.16e+01 c.1.4.1 106151 1imuA 107 7.17e+01 d.204.1.1 66218 1iuhA 198 7.23e+01 d.61.1.2 83711 1bquA 215 7.35e+01 1bquA b.1.2.1,b.1.2.1 22066,22067 1utmA 242 7.59e+01 b.47.1.2 99966 1w7lA 422 7.62e+01 c.67.1.1 109226 1szfA 511 7.63e+01 c.1.4.1 106153 1lcoA 511 7.70e+01 1gox c.1.4.1,d.120.1.1 28624,41088 1kbiA 511 7.70e+01 c.1.4.1,d.120.1.1 72277,72278 1ltdA 506 7.70e+01 1gox c.1.4.1,d.120.1.1 28618,41086 2cpyA 114 7.99e+01 1kqfC 217 8.04e+01 f.21.1.1 72874 1p9mA 299 8.10e+01 b.1.2.1,b.1.2.1,b.1.2.1 87991,87992,87993 1i1rA 303 8.24e+01 1bquA b.1.2.1,b.1.2.1,b.1.2.1 61545,61546,61547 2ap6A 112 8.34e+01 2stbE 222 8.48e+01 5ptp b.47.1.2 26006 1mbqA 220 8.89e+01 b.47.1.2 78920