# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1q18A 332 1.48e-01 c.55.1.7,c.55.1.7 104470,104471 1tbmA 326 2.44e-01 a.211.1.2 106744 1sz2A 332 2.93e-01 1ihp 438 8.29e-01 1ihp c.60.1.2 33993 6gsvA 217 1.06e+00 1b8xA a.45.1.1,c.47.1.5 17633,32925 2ctoA 93 1.57e+00 1y3nA 490 2.04e+00 2c4jA 218 2.43e+00 1xw5A 217 2.45e+00 1zv1A 65 2.46e+00 1jpaA 312 2.48e+00 d.144.1.7 67011 2fiyA 309 2.52e+00 1jhgA 101 3.11e+00 1jhgA a.4.12.1 19009 1zboA 210 3.48e+00 1y5iC 225 3.53e+00 1mzbA 136 3.74e+00 a.4.5.42 91497 1eemA 241 5.90e+00 1eemA a.45.1.1,c.47.1.5 17717,33011 1x1fA 149 5.98e+00 1jb0I 38 6.39e+00 1jb0I f.23.17.1 62826 1b4pA 217 6.54e+00 a.45.1.1,c.47.1.5 83158,83159 1zejA 293 7.34e+00 1nd7A 374 7.35e+00 d.148.1.1 91817 1bd8 156 7.62e+00 1bd8 d.211.1.1 19157 2fu4A 83 7.63e+00 1ufaA 520 8.50e+00 a.8.3.3,c.6.2.4 99329,99330 2esnA 310 8.80e+00 1sq5A 308 1.18e+01 c.37.1.6 105882 1kpsB 171 1.22e+01 a.118.12.1 68787 1sszA 34 1.23e+01 j.35.1.1 105999 1qfxA 460 1.27e+01 1qfxA c.60.1.2 33994 1vj5A 555 1.33e+01 c.108.1.2,c.69.1.11 100799,100800 1zd3A 555 1.33e+01 1qwoA 442 1.35e+01 c.60.1.2 104620 2gsvA 80 1.40e+01 2iu5A 195 1.48e+01 2ac3A 316 1.48e+01 1jk8B 190 1.67e+01 1iakB b.1.1.2,d.19.1.1 63147,63148 1ad3A 452 1.75e+01 1ad3A c.82.1.1 35335 1x6vA 630 1.83e+01 1w1oA 534 1.85e+01 d.58.32.4,d.145.1.1 109071,109072 2gdjA 264 1.94e+01 2aheA 267 1.96e+01 1r4wA 226 1.97e+01 c.47.1.13 97050 1z2nX 324 2.12e+01 2ac5A 316 2.16e+01 1x91A 153 2.26e+01 1x74A 360 2.32e+01 1mzjA 339 2.33e+01 c.95.1.2,c.95.1.2 79700,79701 1wovA 250 2.46e+01 1zkeA 83 2.51e+01 1esiA 262 2.59e+01 1skf e.3.1.1 42682 1rh9A 373 2.65e+01 1wjgA 137 2.72e+01 1b0pA 1231 2.74e+01 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 31831,31832,33104,34157,39003 1i9gA 280 2.82e+01 c.66.1.13 62090 1es5A 262 2.93e+01 1skf e.3.1.1 42679 2fqmA 75 2.96e+01 1bkcE 256 3.09e+01 1bkcA d.92.1.10 40333 2a6hC 1119 3.15e+01 1ohfA 644 3.17e+01 b.121.4.8 93014 1repC 251 3.20e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1qwyA 291 3.21e+01 b.84.3.2 96509 1q16C 225 3.26e+01 f.21.3.1 95549 1z2uA 150 3.43e+01 1yzxA 226 3.44e+01 1xfsA 178 3.46e+01 d.129.3.5 109589 1ab8A 220 3.55e+01 1azsA d.58.29.1 39414 1br1B 150 3.58e+01 1wdcC a.39.1.5 17309 1o5hA 214 3.62e+01 a.191.1.1 92497 1m98A 317 3.62e+01 a.175.1.1,d.17.4.6 78866,78867 1azsB 212 3.64e+01 1azsA d.58.29.1 39423 2a9iA 113 3.64e+01 1yy7A 213 3.69e+01 1m6kA 251 3.76e+01 e.3.1.1 78695 1jakA 512 3.78e+01 c.1.8.6,d.92.2.1 66472,66473 1hp5A 512 3.79e+01 1hp4A c.1.8.6,d.92.2.1 61113,61114 1whrA 124 3.82e+01 1zxcA 263 3.89e+01 4crxA 322 3.90e+01 4crxA a.60.9.1,d.163.1.1 18095,42155 1w07A 659 3.93e+01 1bkcI 256 3.95e+01 1bkcA d.92.1.10 40334 1f44A 324 3.98e+01 a.60.9.1,d.163.1.1 64982,64983 1k4tA 592 4.04e+01 a.2.8.1,d.163.1.2,e.15.1.1 77263,77264,77265 1v88A 130 4.06e+01 b.55.1.1 108423 1m2kA 249 4.10e+01 c.31.1.5 84754 2fpmA 322 4.16e+01 1zq9A 285 4.20e+01 1iw7C 1119 4.26e+01 e.29.1.1 71474 1xo0A 324 4.30e+01 1t4gA 322 4.37e+01 a.60.4.1,c.37.1.11 106418,106419 1v4aA 440 4.41e+01 a.24.16.4,d.218.1.9 108350,108351 1x23A 155 4.42e+01 1n2fA 142 4.43e+01 d.227.1.1 79853 1gewA 356 4.47e+01 1gewA c.67.1.1 60470 1cfzA 162 4.48e+01 1cfzA c.56.1.1 33754 1n1jA 93 4.65e+01 a.22.1.3 79813 1fsu 492 4.65e+01 1auk c.76.1.2 35032 1f7uA 607 4.66e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1jmtB 28 4.79e+01 1xrsA 516 4.83e+01 2fmcA 82 4.88e+01 1ssqA 267 4.91e+01 b.81.1.6 105993 1gwuA 309 5.02e+01 a.93.1.1 83351 2b7aA 293 5.08e+01 1iqcA 308 5.13e+01 a.3.1.5,a.3.1.5 66266,66267 2gw6A 123 5.29e+01 1pn0A 665 5.37e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1ez0A 510 5.38e+01 1eyyA c.82.1.1 35385 2bolA 314 5.39e+01 1h2vC 771 5.51e+01 a.118.1.14,a.118.1.14,a.118.1.14 76592,76593,76594 1ycsB 239 5.56e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 1g7oA 215 5.59e+01 1g7oA a.45.1.1,c.47.1.5 60332,60333 7atjA 308 5.76e+01 1bgp a.93.1.1 18673 1ut7A 171 5.85e+01 b.143.1.1 99906 2ddfA 257 5.93e+01 2btvA 901 5.95e+01 2btvA e.28.1.1 43376 1w36C 1122 6.09e+01 1xqsA 280 6.14e+01 1t01A 255 6.17e+01 a.24.9.1,a.24.9.1 106188,106189 1no1A 126 6.19e+01 a.179.1.1 85913 1v1rA 400 6.21e+01 c.36.1.11 108272 1s5lX 50 6.23e+01 1pgjA 478 6.26e+01 2pgd a.100.1.1,c.2.1.6 18783,30195 1y5iA 1246 6.39e+01 1vls 146 6.44e+01 1vls a.24.2.1 16532 1q16A 1247 6.47e+01 b.52.2.2,c.81.1.1 95546,95547 1qd9A 124 6.56e+01 1qu9A d.79.1.1 39758 1kblA 873 6.60e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1p8xA 344 6.67e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 1esmA 316 6.77e+01 1esmA c.37.1.6 31953 1jilA 420 6.79e+01 c.26.1.1 66745 1tzvA 142 6.92e+01 a.79.1.1 107526 2aplA 157 6.97e+01 1ydiA 263 6.98e+01 1im8A 244 7.21e+01 c.66.1.14 66212 4hb1 108 7.22e+01 4hb1 k.8.1.1 46414 1ytaA 180 7.25e+01 1h6zA 913 7.26e+01 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 2fkzA 155 7.31e+01 2g6tA 306 7.32e+01 1zvzA 279 7.37e+01 1g2fC 90 7.38e+01 k.12.1.1 60222 1i7dA 659 7.43e+01 1d6mA e.10.1.1 61886 1fhuA 320 7.53e+01 1fhuA c.1.11.2,d.54.1.1 29234,38878 1j8yF 297 7.54e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 2fh1A 344 7.57e+01 1j8mF 297 7.57e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1acf 125 7.66e+01 3nul d.110.1.1 40882 1jhdA 396 7.67e+01 b.122.1.3,c.26.1.5 66712,66713 1rkeA 262 7.77e+01 a.24.9.1,a.24.9.1 97608,97609 1b8aA 438 7.81e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1zrzA 364 7.86e+01 1x7yA 400 7.88e+01 1jgjA 217 8.21e+01 1c3wA f.13.1.1 62952 1sheA 103 8.33e+01 d.274.1.1 105551 1m3uA 264 8.39e+01 c.1.12.8 84784 1jbbA 153 8.45e+01 1u9aA d.20.1.1 62842 1mp8A 281 8.54e+01 d.144.1.7 91384 1z6uA 150 8.59e+01 1eumA 165 8.62e+01 1eumA a.25.1.1 59507 1amuA 563 8.64e+01 1amuA e.23.1.1 43351 2furA 209 8.66e+01 1zxkA 98 8.66e+01 1im5A 180 8.82e+01 c.33.1.3 66211 1c52 131 8.86e+01 1c52 a.3.1.1 15810 1dciA 275 8.91e+01 1dciA c.14.1.3 30918 2givA 295 8.91e+01 1jatA 155 8.93e+01 1u9aA d.20.1.1 62818