# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ihp 438 1.33e-01 1ihp c.60.1.2 33993 1sz2A 332 1.91e-01 1tbmA 326 2.15e-01 a.211.1.2 106744 1q18A 332 2.50e-01 c.55.1.7,c.55.1.7 104470,104471 6gsvA 217 4.53e-01 1b8xA a.45.1.1,c.47.1.5 17633,32925 1jpaA 312 4.86e-01 d.144.1.7 67011 1zejA 293 1.22e+00 1jhgA 101 1.32e+00 1jhgA a.4.12.1 19009 1qfxA 460 1.51e+00 1qfxA c.60.1.2 33994 2c4jA 218 1.56e+00 1xw5A 217 1.83e+00 1kblA 873 1.86e+00 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1zd3A 555 2.15e+00 1bd8 156 2.42e+00 1bd8 d.211.1.1 19157 2fu4A 83 2.50e+00 1h6zA 913 2.53e+00 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1mzbA 136 2.72e+00 a.4.5.42 91497 2fiyA 309 2.73e+00 1eemA 241 2.86e+00 1eemA a.45.1.1,c.47.1.5 17717,33011 1vj5A 555 3.09e+00 c.108.1.2,c.69.1.11 100799,100800 1w1oA 534 3.14e+00 d.58.32.4,d.145.1.1 109071,109072 1y3nA 490 3.19e+00 1b4pA 217 3.22e+00 a.45.1.1,c.47.1.5 83158,83159 1zv1A 65 3.25e+00 1qwoA 442 3.34e+00 c.60.1.2 104620 2iu5A 195 4.13e+00 1ufaA 520 4.99e+00 a.8.3.3,c.6.2.4 99329,99330 1jk8B 190 5.80e+00 1iakB b.1.1.2,d.19.1.1 63147,63148 1x1fA 149 6.02e+00 1im5A 180 6.45e+00 c.33.1.3 66211 1okcA 297 6.48e+00 f.42.1.1 93248 1zboA 210 6.56e+00 2gsvA 80 6.61e+00 1x6vA 630 6.81e+00 1sszA 34 8.47e+00 j.35.1.1 105999 1d8wA 426 8.50e+00 1de5A c.1.15.2 29394 1y5iC 225 8.92e+00 1jb0I 38 9.39e+00 1jb0I f.23.17.1 62826 1z2uA 150 9.92e+00 1x23A 155 1.02e+01 1hdiA 413 1.03e+01 16pk c.86.1.1 60964 2gsfA 373 1.08e+01 1zq9A 285 1.13e+01 1hbzA 498 1.16e+01 1cf9A e.5.1.1 60937 2furA 209 1.19e+01 1gweA 503 1.33e+01 e.5.1.1 70667 1m98A 317 1.39e+01 a.175.1.1,d.17.4.6 78866,78867 2ctoA 93 1.42e+01 1es5A 262 1.47e+01 1skf e.3.1.1 42679 1esiA 262 1.47e+01 1skf e.3.1.1 42682 1g5aA 628 1.47e+01 b.71.1.1,c.1.8.1 65152,65153 1sq5A 308 1.48e+01 c.37.1.6 105882 1z2nX 324 1.49e+01 1vls 146 1.52e+01 1vls a.24.2.1 16532 1gewA 356 1.55e+01 1gewA c.67.1.1 60470 1jhdA 396 1.55e+01 b.122.1.3,c.26.1.5 66712,66713 1whrA 124 1.60e+01 1fsu 492 1.67e+01 1auk c.76.1.2 35032 2b7aA 293 1.69e+01 2fh1A 344 1.73e+01 1nd7A 374 1.76e+01 d.148.1.1 91817 1p8xA 344 1.81e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 1kpsB 171 1.81e+01 a.118.12.1 68787 1h2vC 771 1.83e+01 a.118.1.14,a.118.1.14,a.118.1.14 76592,76593,76594 2aheA 267 1.86e+01 1zkeA 83 1.91e+01 2ddfA 257 1.94e+01 1bkcE 256 1.96e+01 1bkcA d.92.1.10 40333 1gcqC 70 1.98e+01 1gcpA b.34.2.1 60436 1ycsB 239 1.99e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 1zxcA 263 2.01e+01 1br1B 150 2.03e+01 1wdcC a.39.1.5 17309 1r4wA 226 2.04e+01 c.47.1.13 97050 1bkcI 256 2.06e+01 1bkcA d.92.1.10 40334 1jmtB 28 2.09e+01 2afwA 329 2.12e+01 1i9gA 280 2.12e+01 c.66.1.13 62090 1dik 874 2.18e+01 1dik c.1.12.2,c.8.1.1,d.142.1.5 29304,30702,41572 1no1A 126 2.19e+01 a.179.1.1 85913 7atjA 308 2.20e+01 1bgp a.93.1.1 18673 1x91A 153 2.22e+01 1pn0A 665 2.28e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1m6kA 251 2.30e+01 e.3.1.1 78695 4crxA 322 2.36e+01 4crxA a.60.9.1,d.163.1.1 18095,42155 1xgkA 352 2.37e+01 2bbrA 195 2.38e+01 1t1uA 639 2.46e+01 1pgjA 478 2.48e+01 2pgd a.100.1.1,c.2.1.6 18783,30195 1tzvA 142 2.51e+01 a.79.1.1 107526 2gdjA 264 2.53e+01 1tkeA 224 2.57e+01 1im8A 244 2.58e+01 c.66.1.14 66212 1n1jA 93 2.59e+01 a.22.1.3 79813 2gw6A 123 2.63e+01 1yozA 116 2.66e+01 1t8sA 484 2.72e+01 c.56.2.1 106679 1hlrA 907 2.86e+01 1vlbA 907 2.87e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1x74A 360 2.87e+01 2esnA 310 2.90e+01 1ad3A 452 2.93e+01 1ad3A c.82.1.1 35335 2f1sA 186 3.00e+01 1uk5A 111 3.05e+01 a.7.7.1 99487 1qwyA 291 3.06e+01 b.84.3.2 96509 1xo0A 324 3.14e+01 1iw7C 1119 3.15e+01 e.29.1.1 71474 1v4aA 440 3.16e+01 a.24.16.4,d.218.1.9 108350,108351 1v9jA 113 3.17e+01 d.52.6.1 100542 1b8aA 438 3.18e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1nu7D 282 3.20e+01 a.8.6.1,a.8.6.1 92191,92192 1fg7A 356 3.24e+01 1gewA c.67.1.1 59819 1pq1A 196 3.25e+01 f.1.4.1 94986 1qd9A 124 3.26e+01 1qu9A d.79.1.1 39758 1d6gA 47 3.39e+01 1d6gA g.33.1.1 44976 1fohA 664 3.40e+01 1fohA c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 1c52 131 3.44e+01 1c52 a.3.1.1 15810 1s6lA 212 3.51e+01 2g6tA 306 3.57e+01 1rh9A 373 3.58e+01 2fqmA 75 3.67e+01 1dbwA 126 3.72e+01 1dbwA c.23.1.1 31095 1g7oA 215 3.80e+01 1g7oA a.45.1.1,c.47.1.5 60332,60333 1j8yF 297 3.86e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 1j8mF 297 3.90e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1fzyA 149 3.93e+01 d.20.1.1 65072 1ohfA 644 3.99e+01 b.121.4.8 93014 1fi2A 201 4.07e+01 1fi2A b.82.1.2 59845 1zrzA 364 4.07e+01 1qtnB 95 4.16e+01 1pauB 1fhuA 320 4.21e+01 1fhuA c.1.11.2,d.54.1.1 29234,38878 1w07A 659 4.23e+01 1gwuA 309 4.24e+01 a.93.1.1 83351 1fpoA 171 4.24e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 1n1fA 159 4.29e+01 a.26.1.3 79803 1n3gA 113 4.30e+01 d.204.1.1 79962 1iqcA 308 4.31e+01 a.3.1.5,a.3.1.5 66266,66267 1b06A 210 4.33e+01 1avmA a.2.11.1,d.44.1.1 15740,38737 1h2sA 225 4.37e+01 f.13.1.1 76578 1ut7A 171 4.46e+01 b.143.1.1 99906 1zxkA 98 4.47e+01 1m48A 133 4.47e+01 a.26.1.2 74443 1tqyB 415 4.48e+01 c.95.1.1,c.95.1.1 107247,107248 2et1A 201 4.54e+01 1oyjA 231 4.54e+01 a.45.1.1,c.47.1.5 87597,87598 1jae 471 4.65e+01 1smd b.71.1.1,c.1.8.1 27773,28760 1f44A 324 4.67e+01 a.60.9.1,d.163.1.1 64982,64983 1ewfA 456 4.72e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 1opjA 293 4.79e+01 d.144.1.7 87230 2fpmA 322 4.79e+01 2a9iA 113 4.80e+01 1hu4A 288 4.82e+01 1hu4A 1n5dA 288 4.82e+01 c.2.1.2 80030 2fgtA 417 4.86e+01 1ppjF 110 4.88e+01 f.27.1.1 104262 1n2fA 142 4.90e+01 d.227.1.1 79853 1cojA 212 4.90e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1yy7A 213 4.94e+01 1acf 125 4.97e+01 3nul d.110.1.1 40882 1z6uA 150 4.99e+01 1ogsA 497 5.00e+01 b.71.1.2,c.1.8.3 86997,86998 1nykA 165 5.14e+01 b.33.1.1 86408 1xfsA 178 5.16e+01 d.129.3.5 109589 1sheA 103 5.18e+01 d.274.1.1 105551 1ewqA 765 5.28e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1w1nA 33 5.29e+01 2b05A 246 5.45e+01 1o5kA 306 5.47e+01 c.1.10.1 92504 2fj6A 82 5.64e+01 1t4gA 322 5.67e+01 a.60.4.1,c.37.1.11 106418,106419 1xrsA 516 5.76e+01 2cwyA 94 5.78e+01 1xl7A 612 5.79e+01 1vbiA 344 5.86e+01 1ha3A 405 5.96e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 60869,60870,60871 1exmA 405 6.02e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 2c78A 405 6.05e+01 1p4cA 380 6.09e+01 c.1.4.1 94100 2f96A 224 6.13e+01 1v1rA 400 6.15e+01 c.36.1.11 108272 1xn8A 131 6.15e+01 1z6gA 218 6.21e+01 1fzqA 181 6.31e+01 1hurA c.37.1.8 32060 1sqgA 429 6.33e+01 a.79.1.3,c.66.1.38 105912,105913 1z0wA 207 6.36e+01 1r0pA 312 6.37e+01 d.144.1.7 96734 1mp8A 281 6.38e+01 d.144.1.7 91384 2ewcA 126 6.41e+01 2fkzA 155 6.44e+01 1uvqB 198 6.47e+01 b.1.1.2,d.19.1.1 100064,100065 1jgjA 217 6.56e+01 1c3wA f.13.1.1 62952 1wjgA 137 6.78e+01 1u5tC 202 6.80e+01 a.4.5.54,a.4.5.54 107688,107689 2ccmA 191 6.95e+01 1g2fC 90 7.10e+01 k.12.1.1 60222 1pd21 199 7.12e+01 1pd21 1jj2L 194 7.12e+01 1ffkI d.12.1.2 63097 1s5lX 50 7.15e+01 1repC 251 7.21e+01 1repC a.4.5.10,a.4.5.10 16125,16126 2g62A 325 7.25e+01 1lwdA 413 7.31e+01 c.77.1.1 78265 1ds1A 324 7.35e+01 1drtA b.82.2.2 28127 1g291 372 7.40e+01 1g291 1zvzA 279 7.42e+01 1x31D 99 7.42e+01 2c2nA 339 7.42e+01 1hr6A 475 7.49e+01 1hr6A d.185.1.1,d.185.1.1 61164,61165 1j3gA 187 7.51e+01 d.118.1.1 77075 1tqxA 227 7.56e+01 1sphA 88 7.60e+01 1ptf d.94.1.1 40544 1ztsA 139 7.65e+01 1wmaA 276 7.80e+01 1a1iA 90 8.00e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1csh 435 8.01e+01 1csh a.103.1.1 18880 2aplA 157 8.02e+01 1bquA 215 8.09e+01 1bquA b.1.2.1,b.1.2.1 22066,22067 2cwlA 302 8.16e+01 2f5tX 233 8.22e+01 1eumA 165 8.25e+01 1eumA a.25.1.1 59507 1mgpA 313 8.28e+01 c.119.1.1 79098 1mr7A 209 8.36e+01 b.81.1.3 91430 1k6xA 352 8.42e+01 c.2.1.2 68238 1pa2A 306 8.48e+01 1bgp a.93.1.1 18693 1qh4A 380 8.50e+01 1qh4A a.83.1.1,d.128.1.2 18462,41197 2ac5A 316 8.54e+01 1xioA 261 8.56e+01 1scfA 273 8.58e+01 1exzA a.26.1.2 16873 1vi0A 206 8.60e+01 a.4.1.9,a.121.1.1 100720,100721 1m3uA 264 8.61e+01 c.1.12.8 84784 1hrkA 359 8.65e+01 1hrkA c.92.1.1 61228 2awdA 323 8.65e+01 2c5rA 67 8.66e+01 1ugpA 203 8.68e+01 d.149.1.1 107831 2f02A 323 8.69e+01 1eyvA 156 8.69e+01 1eyvA a.79.1.1 18446 1amuA 563 8.71e+01 1amuA e.23.1.1 43351 2fikA 287 8.73e+01 1ssqA 267 8.78e+01 b.81.1.6 105993 2b33A 140 8.83e+01 1wqwA 235 8.84e+01 2fb6A 117 8.95e+01 1ireA 204 8.96e+01 d.149.1.1 76769 1rzhL 281 8.98e+01 f.26.1.1 98164 1apyA 162 9.00e+01 1apyA d.153.1.5 42004