# TARGET T0352 # Using neural net t2k-5651-IDaaHr-5-15-7-15-9-15-13-ebghtl-seeded.net # This is a 4-layer network, with # window units # 5 15 # 7 15 # 9 15 # 13 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0352.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(-1 bits/column, 1) # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 59 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.011 0.004 0.004 0.060 0.154 0.766 2 T 0.027 0.029 0.004 0.144 0.115 0.682 3 T 0.015 0.010 0.009 0.718 0.079 0.169 4 H 0.005 0.001 0.013 0.880 0.050 0.051 5 D 0.002 0.001 0.013 0.911 0.041 0.032 6 R 0.001 0.001 0.019 0.933 0.032 0.013 7 V 0.001 0.001 0.009 0.951 0.023 0.016 8 R 0.001 0.001 0.006 0.965 0.017 0.011 9 L 0.001 0.001 0.005 0.955 0.019 0.020 10 Q 0.001 0.001 0.003 0.967 0.008 0.020 11 L 0.001 0.001 0.001 0.994 0.002 0.004 12 Q 0.001 0.001 0.001 0.992 0.002 0.005 13 A 0.001 0.001 0.001 0.996 0.001 0.003 14 L 0.001 0.001 0.001 0.999 0.001 0.001 15 E 0.001 0.001 0.001 0.999 0.001 0.001 16 A 0.001 0.001 0.001 0.999 0.001 0.001 17 L 0.001 0.001 0.001 0.999 0.001 0.001 18 L 0.001 0.001 0.001 0.997 0.002 0.001 19 R 0.001 0.001 0.001 0.991 0.005 0.002 20 E 0.001 0.001 0.002 0.975 0.012 0.011 21 H 0.001 0.001 0.002 0.879 0.032 0.087 22 Q 0.001 0.001 0.004 0.146 0.134 0.713 23 H 0.012 0.009 0.021 0.130 0.277 0.550 24 W 0.050 0.020 0.075 0.191 0.369 0.296 25 R 0.059 0.029 0.100 0.149 0.417 0.245 26 N 0.061 0.007 0.061 0.094 0.307 0.469 27 D 0.026 0.010 0.011 0.052 0.266 0.636 28 E 0.009 0.007 0.007 0.028 0.169 0.779 29 P 0.010 0.010 0.023 0.132 0.213 0.611 30 Q 0.009 0.012 0.061 0.210 0.318 0.390 31 P 0.006 0.004 0.451 0.213 0.278 0.049 32 H 0.006 0.001 0.441 0.182 0.304 0.065 33 Q 0.007 0.003 0.499 0.208 0.224 0.059 34 F 0.013 0.026 0.190 0.366 0.250 0.155 35 N 0.021 0.005 0.036 0.103 0.395 0.441 36 S 0.058 0.009 0.012 0.054 0.539 0.329 37 T 0.079 0.018 0.010 0.026 0.477 0.390 38 Q 0.087 0.015 0.023 0.022 0.599 0.254 39 P 0.107 0.008 0.063 0.019 0.591 0.213 40 F 0.363 0.027 0.091 0.027 0.300 0.191 41 F 0.610 0.049 0.043 0.015 0.131 0.151 42 M 0.502 0.027 0.064 0.019 0.255 0.132 43 D 0.201 0.005 0.071 0.029 0.383 0.310 44 T 0.227 0.010 0.034 0.032 0.342 0.355 45 M 0.276 0.029 0.008 0.024 0.213 0.449 46 E 0.195 0.043 0.002 0.021 0.054 0.685 47 P 0.023 0.001 0.038 0.849 0.050 0.040 48 L 0.002 0.001 0.029 0.934 0.027 0.008 49 E 0.002 0.001 0.023 0.925 0.040 0.010 50 W 0.001 0.001 0.011 0.941 0.033 0.014 51 L 0.001 0.001 0.006 0.949 0.021 0.021 52 Q 0.001 0.001 0.008 0.971 0.011 0.008 53 W 0.001 0.001 0.008 0.983 0.006 0.003 54 V 0.001 0.001 0.006 0.976 0.008 0.008 55 L 0.001 0.001 0.004 0.981 0.005 0.008 56 I 0.001 0.001 0.001 0.982 0.004 0.012 57 P 0.001 0.001 0.001 0.996 0.001 0.002 58 R 0.001 0.001 0.001 0.998 0.001 0.001 59 M 0.001 0.001 0.001 0.998 0.001 0.001 60 H 0.001 0.001 0.001 0.999 0.001 0.001 61 D 0.001 0.001 0.001 0.999 0.001 0.001 62 L 0.001 0.001 0.001 0.997 0.002 0.001 63 L 0.001 0.001 0.001 0.993 0.004 0.002 64 D 0.001 0.001 0.002 0.985 0.008 0.005 65 N 0.001 0.001 0.002 0.942 0.022 0.033 66 K 0.002 0.001 0.003 0.136 0.129 0.729 67 Q 0.007 0.008 0.003 0.012 0.145 0.826 68 P 0.014 0.035 0.007 0.013 0.270 0.661 69 L 0.009 0.021 0.009 0.016 0.416 0.529 70 P 0.009 0.005 0.029 0.018 0.729 0.211 71 G 0.031 0.007 0.072 0.053 0.685 0.152 72 A 0.070 0.016 0.065 0.108 0.603 0.138 73 F 0.145 0.049 0.032 0.155 0.436 0.184 74 A 0.107 0.029 0.024 0.326 0.202 0.312 75 V 0.043 0.025 0.019 0.691 0.076 0.147 76 A 0.008 0.001 0.007 0.932 0.022 0.029 77 P 0.002 0.001 0.004 0.982 0.006 0.006 78 Y 0.002 0.001 0.004 0.988 0.004 0.002 79 Y 0.001 0.001 0.003 0.990 0.003 0.002 80 E 0.001 0.001 0.002 0.990 0.004 0.002 81 M 0.001 0.001 0.004 0.989 0.005 0.002 82 A 0.001 0.001 0.004 0.984 0.008 0.004 83 L 0.001 0.001 0.004 0.967 0.018 0.010 84 A 0.001 0.001 0.005 0.935 0.034 0.025 85 T 0.001 0.001 0.007 0.732 0.103 0.156 86 D 0.001 0.001 0.009 0.634 0.117 0.239 87 H 0.001 0.002 0.030 0.454 0.254 0.259 88 P 0.001 0.003 0.046 0.556 0.263 0.132 89 Q 0.001 0.002 0.064 0.718 0.131 0.084 90 R 0.002 0.002 0.036 0.708 0.120 0.132 91 A 0.003 0.001 0.030 0.857 0.052 0.056 92 L 0.005 0.004 0.021 0.885 0.035 0.051 93 I 0.002 0.001 0.006 0.942 0.015 0.035 94 L 0.001 0.001 0.002 0.961 0.008 0.027 95 A 0.001 0.001 0.002 0.974 0.007 0.016 96 E 0.001 0.001 0.002 0.988 0.004 0.005 97 L 0.001 0.001 0.002 0.993 0.002 0.002 98 E 0.001 0.001 0.004 0.983 0.008 0.005 99 K 0.001 0.001 0.006 0.980 0.008 0.006 100 L 0.001 0.001 0.007 0.971 0.013 0.008 101 D 0.002 0.001 0.015 0.934 0.031 0.017 102 A 0.005 0.002 0.021 0.889 0.048 0.035 103 L 0.009 0.003 0.022 0.807 0.077 0.082 104 F 0.012 0.011 0.024 0.709 0.144 0.100 105 A 0.017 0.006 0.023 0.346 0.355 0.253 106 D 0.010 0.006 0.039 0.159 0.441 0.346 107 D 0.008 0.013 0.023 0.074 0.317 0.566 108 A 0.006 0.016 0.017 0.064 0.187 0.710 109 S 0.001 0.002 0.001 0.005 0.026 0.967