# TARGET T0352 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0352.t2k-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 16.1527 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.285 0.174 0.246 0.121 0.051 0.054 0.030 0.007 0.028 0.004 0.001 2 T 0.331 0.198 0.233 0.111 0.064 0.029 0.010 0.005 0.011 0.007 0.001 3 T 0.507 0.164 0.091 0.160 0.026 0.019 0.005 0.003 0.015 0.009 0.001 4 H 0.829 0.031 0.080 0.023 0.011 0.009 0.004 0.002 0.005 0.005 0.001 5 D 0.966 0.001 0.005 0.012 0.001 0.006 0.006 0.003 0.001 0.001 0.001 6 R 0.992 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 7 V 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 8 R 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 9 L 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 10 Q 0.992 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 L 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 Q 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 L 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 L 0.997 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 L 0.985 0.001 0.001 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 R 0.992 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 20 E 0.961 0.002 0.002 0.034 0.001 0.001 0.001 0.001 0.001 0.001 0.001 21 H 0.483 0.006 0.012 0.489 0.002 0.002 0.003 0.001 0.003 0.001 0.001 22 Q 0.152 0.006 0.018 0.050 0.005 0.019 0.679 0.055 0.014 0.002 0.001 23 H 0.518 0.105 0.091 0.224 0.021 0.022 0.009 0.002 0.007 0.001 0.001 24 W 0.461 0.111 0.176 0.150 0.044 0.029 0.009 0.005 0.011 0.003 0.001 25 R 0.436 0.166 0.141 0.159 0.028 0.034 0.011 0.002 0.022 0.002 0.001 26 N 0.284 0.177 0.127 0.270 0.037 0.033 0.034 0.009 0.028 0.001 0.001 27 D 0.109 0.288 0.353 0.075 0.041 0.046 0.029 0.004 0.052 0.004 0.001 28 E 0.046 0.136 0.679 0.004 0.011 0.032 0.010 0.001 0.076 0.002 0.004 29 P 0.107 0.006 0.799 0.008 0.001 0.024 0.001 0.001 0.001 0.001 0.053 30 Q 0.058 0.066 0.773 0.003 0.012 0.036 0.003 0.001 0.041 0.003 0.003 31 P 0.795 0.004 0.152 0.020 0.001 0.013 0.001 0.001 0.001 0.001 0.011 32 H 0.822 0.016 0.038 0.082 0.013 0.004 0.011 0.007 0.005 0.002 0.001 33 Q 0.606 0.024 0.058 0.275 0.009 0.014 0.007 0.002 0.004 0.001 0.001 34 F 0.307 0.132 0.248 0.180 0.043 0.056 0.010 0.004 0.018 0.002 0.001 35 N 0.167 0.113 0.096 0.461 0.039 0.051 0.031 0.005 0.035 0.002 0.001 36 S 0.149 0.226 0.360 0.083 0.148 0.017 0.004 0.003 0.005 0.005 0.001 37 T 0.235 0.034 0.040 0.656 0.008 0.008 0.005 0.005 0.007 0.001 0.001 38 Q 0.004 0.461 0.260 0.001 0.037 0.011 0.010 0.001 0.214 0.001 0.001 39 P 0.048 0.016 0.804 0.003 0.001 0.052 0.001 0.001 0.002 0.001 0.074 40 F 0.090 0.406 0.236 0.051 0.081 0.052 0.024 0.012 0.043 0.003 0.001 41 F 0.082 0.439 0.270 0.025 0.063 0.077 0.011 0.003 0.025 0.004 0.001 42 M 0.196 0.359 0.173 0.118 0.068 0.047 0.006 0.001 0.030 0.002 0.001 43 D 0.182 0.100 0.182 0.121 0.052 0.207 0.082 0.004 0.063 0.007 0.001 44 T 0.303 0.129 0.097 0.400 0.021 0.030 0.007 0.002 0.010 0.001 0.001 45 M 0.330 0.095 0.277 0.059 0.073 0.015 0.061 0.031 0.021 0.038 0.001 46 E 0.250 0.040 0.591 0.009 0.011 0.042 0.008 0.002 0.033 0.006 0.007 47 P 0.959 0.001 0.026 0.008 0.001 0.004 0.001 0.001 0.001 0.001 0.002 48 L 0.955 0.001 0.004 0.036 0.001 0.002 0.001 0.001 0.001 0.001 0.001 49 E 0.965 0.005 0.010 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 50 W 0.992 0.001 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 51 L 0.994 0.001 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 52 Q 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 53 W 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 54 V 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 55 L 0.956 0.001 0.001 0.041 0.001 0.001 0.001 0.001 0.001 0.001 0.001 56 I 0.891 0.007 0.014 0.030 0.001 0.008 0.003 0.001 0.047 0.001 0.001 57 P 0.971 0.001 0.009 0.011 0.001 0.002 0.002 0.003 0.001 0.001 0.001 58 R 0.956 0.001 0.003 0.032 0.001 0.003 0.001 0.001 0.001 0.001 0.001 59 M 0.981 0.001 0.001 0.017 0.001 0.001 0.001 0.001 0.001 0.001 0.001 60 H 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 61 D 0.993 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 62 L 0.988 0.001 0.001 0.011 0.001 0.001 0.001 0.001 0.001 0.001 0.001 63 L 0.972 0.002 0.002 0.023 0.001 0.001 0.001 0.001 0.001 0.001 0.001 64 D 0.888 0.006 0.010 0.083 0.001 0.003 0.006 0.001 0.001 0.001 0.001 65 N 0.293 0.012 0.028 0.650 0.004 0.001 0.007 0.002 0.001 0.001 0.001 66 K 0.038 0.005 0.013 0.143 0.003 0.022 0.692 0.075 0.010 0.002 0.001 67 Q 0.007 0.429 0.342 0.001 0.014 0.027 0.007 0.001 0.171 0.001 0.001 68 P 0.078 0.005 0.765 0.010 0.001 0.076 0.001 0.001 0.002 0.001 0.063 69 L 0.037 0.192 0.591 0.003 0.010 0.051 0.007 0.001 0.106 0.001 0.001 70 P 0.117 0.008 0.806 0.010 0.001 0.037 0.001 0.001 0.003 0.001 0.017 71 G 0.282 0.021 0.142 0.063 0.067 0.005 0.039 0.241 0.002 0.137 0.001 72 A 0.493 0.109 0.128 0.150 0.055 0.019 0.018 0.014 0.007 0.005 0.001 73 F 0.256 0.231 0.212 0.183 0.062 0.022 0.011 0.004 0.016 0.004 0.001 74 A 0.348 0.206 0.215 0.048 0.063 0.068 0.013 0.005 0.025 0.007 0.001 75 V 0.455 0.235 0.161 0.068 0.012 0.043 0.002 0.001 0.022 0.001 0.001 76 A 0.693 0.054 0.151 0.004 0.017 0.013 0.008 0.003 0.038 0.017 0.001 77 P 0.937 0.001 0.035 0.005 0.001 0.008 0.001 0.001 0.001 0.001 0.012 78 Y 0.970 0.005 0.005 0.012 0.001 0.002 0.002 0.001 0.001 0.001 0.001 79 Y 0.982 0.004 0.003 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 80 E 0.994 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 81 M 0.989 0.001 0.001 0.008 0.001 0.001 0.001 0.001 0.001 0.001 0.001 82 A 0.981 0.001 0.001 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 83 L 0.933 0.005 0.009 0.048 0.001 0.002 0.001 0.001 0.001 0.001 0.001 84 A 0.857 0.010 0.023 0.092 0.003 0.006 0.005 0.001 0.002 0.001 0.001 85 T 0.642 0.029 0.051 0.244 0.014 0.005 0.007 0.004 0.003 0.002 0.001 86 D 0.287 0.035 0.074 0.452 0.009 0.061 0.049 0.007 0.024 0.002 0.001 87 H 0.066 0.166 0.302 0.012 0.028 0.050 0.023 0.001 0.349 0.003 0.001 88 P 0.830 0.001 0.111 0.028 0.001 0.011 0.003 0.001 0.001 0.002 0.012 89 Q 0.810 0.011 0.026 0.123 0.004 0.008 0.006 0.007 0.003 0.002 0.001 90 R 0.868 0.021 0.043 0.048 0.004 0.007 0.003 0.001 0.003 0.001 0.001 91 A 0.949 0.005 0.018 0.013 0.002 0.005 0.005 0.002 0.001 0.001 0.001 92 L 0.970 0.004 0.006 0.014 0.001 0.003 0.001 0.001 0.001 0.001 0.001 93 I 0.976 0.003 0.003 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 94 L 0.995 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 95 A 0.995 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 96 E 0.962 0.001 0.001 0.037 0.001 0.001 0.001 0.001 0.001 0.001 0.001 97 L 0.971 0.001 0.003 0.023 0.001 0.001 0.001 0.001 0.001 0.001 0.001 98 E 0.991 0.001 0.001 0.004 0.001 0.001 0.002 0.001 0.001 0.001 0.001 99 K 0.984 0.001 0.001 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 100 L 0.981 0.001 0.002 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 101 D 0.989 0.001 0.002 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 102 A 0.989 0.001 0.002 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 103 L 0.937 0.001 0.002 0.059 0.001 0.001 0.001 0.001 0.001 0.001 0.001 104 F 0.710 0.023 0.046 0.184 0.003 0.015 0.003 0.001 0.015 0.001 0.001 105 A 0.525 0.062 0.135 0.199 0.015 0.024 0.015 0.004 0.010 0.009 0.001 106 D 0.476 0.037 0.120 0.270 0.022 0.020 0.031 0.008 0.011 0.006 0.001 107 D 0.360 0.036 0.109 0.314 0.022 0.050 0.062 0.017 0.026 0.003 0.001 108 A 0.371 0.073 0.168 0.285 0.017 0.033 0.024 0.007 0.019 0.003 0.001 109 S 0.346 0.087 0.220 0.158 0.053 0.018 0.038 0.035 0.011 0.034 0.001