# List of top-scoring protein chains for t2k-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ihp 438 2.99e-01 1ihp c.60.1.2 33993 1tbmA 326 4.10e-01 a.211.1.2 106744 6gsvA 217 7.95e-01 1b8xA a.45.1.1,c.47.1.5 17633,32925 1q18A 332 1.03e+00 c.55.1.7,c.55.1.7 104470,104471 1qfxA 460 2.28e+00 1qfxA c.60.1.2 33994 1xw5A 217 2.37e+00 2c4jA 218 2.38e+00 1efuA 385 2.53e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25682,25722,32115 2myo 118 2.74e+00 2myo d.211.1.1 19175 1myo 118 2.83e+00 2myo d.211.1.1 19174 1sz2A 332 3.11e+00 1b4pA 217 4.18e+00 a.45.1.1,c.47.1.5 83158,83159 1x74A 360 4.60e+00 1zboA 210 4.95e+00 1qwoA 442 5.16e+00 c.60.1.2 104620 1zv1A 65 5.83e+00 1zd3A 555 6.43e+00 1vj5A 555 6.50e+00 c.108.1.2,c.69.1.11 100799,100800 1eemA 241 6.60e+00 1eemA a.45.1.1,c.47.1.5 17717,33011 1bd8 156 7.61e+00 1bd8 d.211.1.1 19157 1jb0I 38 7.89e+00 1jb0I f.23.17.1 62826 2aheA 267 8.06e+00 1f7uA 607 8.22e+00 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1nd7A 374 8.26e+00 d.148.1.1 91817 1efcA 393 8.46e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25680,25720,32113 1etu 394 8.88e+00 1efcA c.37.1.8 64737 1hp4A 512 8.92e+00 1hp4A c.1.8.6,d.92.2.1 61111,61112 1jakA 512 8.92e+00 c.1.8.6,d.92.2.1 66472,66473 1sq5A 308 9.04e+00 c.37.1.6 105882 1hp5A 512 9.18e+00 1hp4A c.1.8.6,d.92.2.1 61113,61114 1x1fA 149 9.23e+00 1hf8A 289 9.44e+00 1hg5A a.7.8.2,a.118.9.3 90354,90355 1zejA 293 9.92e+00 1jpaA 312 1.02e+01 d.144.1.7 67011 2afwA 329 1.06e+01 1y5iC 225 1.46e+01 2fiyA 309 1.50e+01 1hg5A 289 1.56e+01 1hg5A a.7.8.2,a.118.9.3 90360,90361 1o5hA 214 1.56e+01 a.191.1.1 92497 1x6vA 630 1.59e+01 1w07A 659 1.66e+01 2lefA 86 1.71e+01 2lefA a.21.1.1 16433 2ccmA 191 1.73e+01 1de5A 426 1.75e+01 1de5A c.1.15.2 29402 1ufaA 520 1.76e+01 a.8.3.3,c.6.2.4 99329,99330 1hg2A 289 1.77e+01 1hg5A a.7.8.2,a.118.9.3 90358,90359 1llmC 88 1.81e+01 g.37.1.1,g.37.1.1 91059,91060 1y3nA 490 1.85e+01 1w1oA 534 1.99e+01 d.58.32.4,d.145.1.1 109071,109072 1mzbA 136 1.99e+01 a.4.5.42 91497 1fhuA 320 2.06e+01 1fhuA c.1.11.2,d.54.1.1 29234,38878 1trrA 107 2.12e+01 1jhgA a.4.12.1 19017 1ad3A 452 2.12e+01 1ad3A c.82.1.1 35335 1kpsB 171 2.13e+01 a.118.12.1 68787 1qrjB 199 2.13e+01 1qrjB a.28.3.1 16952 1zq9A 285 2.19e+01 1i9gA 280 2.19e+01 c.66.1.13 62090 1vf1A 229 2.39e+01 2esnA 310 2.40e+01 1sszA 34 2.46e+01 j.35.1.1 105999 1im5A 180 2.49e+01 c.33.1.3 66211 1v54H 85 2.51e+01 a.51.1.1 100329 1hdiA 413 2.60e+01 16pk c.86.1.1 60964 2occH 85 2.78e+01 2occH a.51.1.1 17796 2iu5A 195 2.82e+01 1p4dA 330 2.91e+01 d.89.1.5 94101 1e6iA 121 2.97e+01 1b91A a.29.2.1 16969 2fmcA 82 2.98e+01 1gewA 356 3.02e+01 1gewA c.67.1.1 60470 1m6kA 251 3.04e+01 e.3.1.1 78695 1gulA 222 3.04e+01 1pgtA a.45.1.1,c.47.1.5 17675,32969 1mun 225 3.09e+01 1mun a.96.1.2 18744 1mgpA 313 3.09e+01 c.119.1.1 79098 1b8aA 438 3.15e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1gumA 222 3.16e+01 1pgtA a.45.1.1,c.47.1.5 17683,32977 2mev2 256 3.24e+01 1aym2 2wrpR 107 3.55e+01 1jhgA a.4.12.1 19010 1jhdA 396 3.72e+01 b.122.1.3,c.26.1.5 66712,66713 1jhgA 101 3.74e+01 1jhgA a.4.12.1 19009 1d6gA 47 3.74e+01 1d6gA g.33.1.1 44976 1mg2D 155 3.80e+01 a.3.1.1 79062 1m98A 317 4.07e+01 a.175.1.1,d.17.4.6 78866,78867 2afaA 425 4.19e+01 1fsu 492 4.21e+01 1auk c.76.1.2 35032 1f3aA 222 4.28e+01 1pgtA a.45.1.1,c.47.1.5 17701,32995 1qwyA 291 4.37e+01 b.84.3.2 96509 2db0A 253 4.58e+01 1br1B 150 4.71e+01 1wdcC a.39.1.5 17309 1no1A 126 4.74e+01 a.179.1.1 85913 1jhnA 424 4.82e+01 b.104.1.1,b.29.1.12 66722,70060 1de6A 426 4.82e+01 1de5A c.1.15.2 29398 2fqmA 75 4.84e+01 1fzyA 149 5.04e+01 d.20.1.1 65072 1vzoA 355 5.15e+01 d.144.1.7 108971 2atjA 308 5.16e+01 1bgp a.93.1.1 18675 1xfsA 178 5.18e+01 d.129.3.5 109589 1iw7C 1119 5.23e+01 e.29.1.1 71474 2mtaC 147 5.26e+01 2mtaC a.3.1.1 15908 2cchB 260 5.27e+01 1qmzB 259 5.31e+01 1vin a.74.1.1,a.74.1.1 18338,18339 2ctoA 93 5.43e+01 1r5zA 323 5.62e+01 f.40.1.1 97135 5csmA 256 5.78e+01 5csmA a.130.1.2 19494 1ewfA 456 5.83e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 1x91A 153 5.87e+01 1xioA 261 5.93e+01 1v9mA 323 5.93e+01 f.40.1.1 100543 1jweA 114 5.93e+01 1b79A a.81.1.1 18455 1huvA 380 5.94e+01 c.1.4.1 61277 1jmtB 28 5.99e+01 1buyA 166 6.00e+01 1eerA a.26.1.2 16848 1xjzA 233 6.20e+01 1tu7A 208 6.27e+01 1p4cA 380 6.33e+01 c.1.4.1 94100 1wjgA 137 6.34e+01 1n1jB 97 6.34e+01 a.22.1.3 79814 1fxtA 149 6.38e+01 d.20.1.1 65055 1t92A 116 6.39e+01 1h2vC 771 6.46e+01 a.118.1.14,a.118.1.14,a.118.1.14 76592,76593,76594 1csmA 256 6.53e+01 5csmA a.130.1.2 19495 1qd9A 124 6.56e+01 1qu9A d.79.1.1 39758 1aihA 170 6.81e+01 1aihA d.163.1.1 42149 1lfpA 249 6.84e+01 e.39.1.1 73885 1muyA 225 6.90e+01 1mun a.96.1.2 18745 1v96A 149 6.94e+01 1acp 77 7.03e+01 1acp a.28.1.1 16931 1n45A 233 7.18e+01 a.132.1.1 79981 1ycsB 239 7.23e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 2aclB 244 7.31e+01 1qcrF 103 7.31e+01 1be3F f.27.1.1 43676 1r6wA 322 7.31e+01 c.1.11.2,d.54.1.1 97165,97166 1xmeA 568 7.33e+01 1be3F 110 7.34e+01 1be3F f.27.1.1 43668 1fhvA 323 7.39e+01 1fhuA c.1.11.2,d.54.1.1 29235,38879 1tqyB 415 7.40e+01 c.95.1.1,c.95.1.1 107247,107248 2cz1A 206 7.46e+01 1aoiC 116 7.46e+01 1aoiC a.22.1.1 16440 1ugpA 203 7.48e+01 d.149.1.1 107831 1yy7A 213 7.53e+01 2bbrA 195 7.53e+01 1z2nX 324 7.57e+01 1bj8 109 7.58e+01 1bquA b.1.2.1 22070 1d5wC 126 7.62e+01 1dbwA c.23.1.1 31101 1vf6A 83 7.65e+01 a.194.1.1 100600 1ahjA 207 7.72e+01 2ahjA d.149.1.1 41774 2fu4A 83 7.72e+01 2a6hC 1119 7.80e+01 2g6tA 306 7.87e+01 1ireA 204 8.06e+01 d.149.1.1 76769 1kbuA 349 8.18e+01 a.60.9.1,d.163.1.1 72284,72285 1zvdA 380 8.26e+01 1w99A 558 8.43e+01 1n2fA 142 8.59e+01 d.227.1.1 79853 2ki5A 366 8.60e+01 1qhiA c.37.1.1 31862 1n1jA 93 8.62e+01 a.22.1.3 79813 1drtA 324 8.70e+01 1drtA b.82.2.2 28130 1pgjA 478 8.75e+01 2pgd a.100.1.1,c.2.1.6 18783,30195 1hz4A 373 8.83e+01 a.118.8.2 65960 1jk8B 190 8.84e+01 1iakB b.1.1.2,d.19.1.1 63147,63148 2aplA 157 8.92e+01