# List of top-scoring protein chains for t2k-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1iuhA 198 1.67e+00 d.61.1.2 83711 1m2kA 249 2.45e+00 c.31.1.5 84754 1h6zA 913 2.95e+00 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1m6jA 261 3.66e+00 c.1.1.1 78693 1jsxA 207 5.65e+00 c.66.1.20 71846 1ewqA 765 7.43e+00 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1iciA 256 8.03e+00 1iciA c.31.1.5 62266 2fqmA 75 9.63e+00 1pzqA 60 9.93e+00 a.34.3.1 95466 2furA 209 1.01e+01 1w36C 1122 1.07e+01 1vj5A 555 1.13e+01 c.108.1.2,c.69.1.11 100799,100800 1s7jA 262 1.30e+01 d.21.1.2 98647 1zd3A 555 1.31e+01 1cr6B 554 1.33e+01 1cr6B c.69.1.11,c.108.1.2 34688,43338 3fapB 94 1.35e+01 1nsgB a.24.7.1 16612 1ooeA 236 1.37e+01 c.2.1.2 87196 1tuaA 191 1.39e+01 d.51.1.1,d.51.1.1 107321,107322 1n2fA 142 1.56e+01 d.227.1.1 79853 1fapB 95 1.77e+01 1nsgB a.24.7.1 16618 1t6aA 126 1.96e+01 d.129.8.1 106555 2mev2 256 1.98e+01 1aym2 1kfd 605 2.10e+01 1xwl c.55.3.5,e.8.1.1 33694,42987 1jpaA 312 2.11e+01 d.144.1.7 67011 1yzxA 226 2.12e+01 1w1oA 534 2.14e+01 d.58.32.4,d.145.1.1 109071,109072 1myo 118 2.17e+01 2myo d.211.1.1 19174 2fmcA 82 2.22e+01 1i9gA 280 2.27e+01 c.66.1.13 62090 2fywA 267 2.30e+01 2esnA 310 2.43e+01 1gwcA 230 2.49e+01 a.45.1.1,c.47.1.5 70660,70661 1nsgB 94 2.99e+01 1nsgB a.24.7.1 16613 1bp1 456 3.40e+01 1bp1 d.83.1.1,d.83.1.1 40026,40027 1ewfA 456 3.43e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 1qrvB 73 3.59e+01 a.21.1.1 16426 2myo 118 3.61e+01 2myo d.211.1.1 19175 2a6cA 83 3.62e+01 1zccA 248 3.62e+01 1gnc 178 3.62e+01 1bgc a.26.1.1 16821 1gqeA 365 3.64e+01 e.38.1.1 70351 1h2vC 771 3.65e+01 a.118.1.14,a.118.1.14,a.118.1.14 76592,76593,76594 1aueA 100 3.79e+01 1nsgB a.24.7.1 16615 1bf5A 545 3.87e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1e08A 371 3.92e+01 i.4.1.1 45914 1z2nX 324 3.97e+01 1hfeL 421 4.10e+01 1fehA c.96.1.1,d.58.1.5 36018,39001 1jhnA 424 4.15e+01 b.104.1.1,b.29.1.12 66722,70060 1jmxA 494 4.17e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1xkmB 25 4.17e+01 2ar0A 541 4.33e+01 1knvA 293 4.39e+01 c.52.1.7 68707 1x6vA 630 4.74e+01 1ufaA 520 4.89e+01 a.8.3.3,c.6.2.4 99329,99330 1thg 544 4.92e+01 1thg c.69.1.17 34763 1b3qA 379 5.02e+01 1b3qA a.30.2.1,b.40.7.1,d.122.1.3 16993,25454,41112 1v8eA 224 5.09e+01 1d4bA 122 5.34e+01 1d4bA d.15.2.1 37638 1vd6A 224 5.49e+01 1kblA 873 5.63e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1oyjA 231 5.67e+01 a.45.1.1,c.47.1.5 87597,87598 1bj8 109 5.81e+01 1bquA b.1.2.1 22070 1clvI 32 5.82e+01 1qfdA g.3.2.1 44075 1qrvA 73 5.84e+01 1cktA a.21.1.1 16425 1guxA 218 5.87e+01 1guxA a.74.1.3 18388 1im5A 180 6.00e+01 c.33.1.3 66211 1m7vA 363 6.44e+01 d.174.1.1 78748 2cdqA 510 6.47e+01 1qfdA 32 6.52e+01 1qfdA g.3.2.1 44076 1x4tA 92 6.54e+01 1koqA 253 6.65e+01 2cba b.74.1.1 27964 2afwA 329 6.86e+01 1eemA 241 6.97e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1jmtB 28 7.05e+01 1kopA 223 7.16e+01 2cba b.74.1.1 27966 1scmA 60 7.26e+01 1wdcA 1o4vA 183 7.28e+01 c.23.8.1 86628 1mjhA 162 7.28e+01 1mjhA c.26.2.4 31639 1uklC 61 7.32e+01 a.38.1.1 99495 1xeaA 323 7.42e+01 c.2.1.3,d.81.1.5 109572,109573 2fy6A 143 7.43e+01 1ka9H 200 7.50e+01 c.23.16.1 77308 1vqsA 116 7.52e+01 1ihp 438 7.59e+01 1ihp c.60.1.2 33993 1t98A 287 7.62e+01 1n1fA 159 7.73e+01 a.26.1.3 79803 2db0A 253 7.78e+01 2b7yA 182 7.84e+01 2acvA 463 8.02e+01 1a6bB 40 8.16e+01 1a6bB g.40.1.1 45172 1br1B 150 8.23e+01 1wdcC a.39.1.5 17309 1q4uA 151 8.29e+01 d.38.1.5 95828 1aikN 38 8.30e+01 1aikN h.3.2.1 45723 1kv4A 42 8.38e+01 j.4.1.3 73051 1ni3A 392 8.38e+01 c.37.1.8,d.15.10.2 80531,80532 1eia 207 8.43e+01 1eia a.28.3.1,a.73.1.1 16951,18331 1i5nA 146 8.49e+01 1i5nA a.24.10.3 61805 1cd9C 175 8.75e+01 1bgc a.26.1.1 16816 1buyA 166 8.77e+01 1eerA a.26.1.2 16848 1bquA 215 8.79e+01 1bquA b.1.2.1,b.1.2.1 22066,22067