# List of top-scoring protein chains for t2k-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 6gsvA 217 4.71e-01 1b8xA a.45.1.1,c.47.1.5 17633,32925 2myo 118 8.59e-01 2myo d.211.1.1 19175 1ihp 438 9.79e-01 1ihp c.60.1.2 33993 1myo 118 1.11e+00 2myo d.211.1.1 19174 2mev2 256 1.96e+00 1aym2 1cr6B 554 2.00e+00 1cr6B c.69.1.11,c.108.1.2 34688,43338 1tbmA 326 2.01e+00 a.211.1.2 106744 2fiyA 309 2.22e+00 1xw5A 217 2.50e+00 2c4jA 218 2.65e+00 1sz2A 332 2.89e+00 1b4pA 217 2.89e+00 a.45.1.1,c.47.1.5 83158,83159 1bd8 156 3.26e+00 1bd8 d.211.1.1 19157 1eemA 241 3.45e+00 1eemA a.45.1.1,c.47.1.5 17717,33011 1trrA 107 3.84e+00 1jhgA a.4.12.1 19017 1zd3A 555 3.99e+00 1q18A 332 4.06e+00 c.55.1.7,c.55.1.7 104470,104471 1vj5A 555 4.38e+00 c.108.1.2,c.69.1.11 100799,100800 1efcA 393 4.53e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25680,25720,32113 1ad3A 452 4.75e+00 1ad3A c.82.1.1 35335 1noyA 388 5.06e+00 1clqA c.55.3.5 33713 1etu 394 5.83e+00 1efcA c.37.1.8 64737 1eia 207 5.86e+00 1eia a.28.3.1,a.73.1.1 16951,18331 1llmC 88 6.53e+00 g.37.1.1,g.37.1.1 91059,91060 1qfxA 460 6.67e+00 1qfxA c.60.1.2 33994 1efuA 385 6.67e+00 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25682,25722,32115 1m3uA 264 6.69e+00 c.1.12.8 84784 2wrpR 107 7.67e+00 1jhgA a.4.12.1 19010 1x1fA 149 7.89e+00 1zv1A 65 9.95e+00 1jhgA 101 1.06e+01 1jhgA a.4.12.1 19009 1p4dA 330 1.11e+01 d.89.1.5 94101 1nozA 388 1.12e+01 1clqA c.55.3.5 33715 2fmcA 82 1.14e+01 2g6tA 306 1.19e+01 1x74A 360 1.19e+01 1qwoA 442 1.21e+01 c.60.1.2 104620 1jb0I 38 1.23e+01 1jb0I f.23.17.1 62826 1ituA 369 1.24e+01 c.1.9.7 71423 2gsvA 80 1.30e+01 1w1oA 534 1.33e+01 d.58.32.4,d.145.1.1 109071,109072 2furA 209 1.42e+01 1h6zA 913 1.42e+01 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1y3nA 490 1.44e+01 1f7uA 607 1.45e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1jpaA 312 1.47e+01 d.144.1.7 67011 1sq5A 308 1.49e+01 c.37.1.6 105882 1rcsA 105 1.52e+01 1jhgA a.4.12.1 19025 1zejA 293 1.55e+01 1ufaA 520 1.58e+01 a.8.3.3,c.6.2.4 99329,99330 1sszA 34 1.67e+01 j.35.1.1 105999 1v1rA 400 1.75e+01 c.36.1.11 108272 1ohfA 644 1.83e+01 b.121.4.8 93014 1kpsB 171 1.92e+01 a.118.12.1 68787 1zboA 210 1.96e+01 1hdiA 413 2.03e+01 16pk c.86.1.1 60964 1z6uA 150 2.11e+01 1rkd 309 2.12e+01 1rkd c.72.1.1 34928 2ctoA 93 2.20e+01 1s72I 162 2.21e+01 a.4.7.1 105328 1nd7A 374 2.25e+01 d.148.1.1 91817 1m6jA 261 2.35e+01 c.1.1.1 78693 1r4wA 226 2.67e+01 c.47.1.13 97050 1vqoI 162 2.71e+01 1skf 262 2.72e+01 1skf e.3.1.1 42684 1x7yA 400 2.73e+01 1es5A 262 2.74e+01 1skf e.3.1.1 42679 1ycsB 239 2.79e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 1n1jA 93 2.81e+01 a.22.1.3 79813 2db0A 253 2.81e+01 1esiA 262 2.82e+01 1skf e.3.1.1 42682 2occH 85 2.89e+01 2occH a.51.1.1 17796 2afwA 329 2.90e+01 1fg7A 356 3.01e+01 1gewA c.67.1.1 59819 1z2nX 324 3.10e+01 1x6vA 630 3.10e+01 2aheA 267 3.14e+01 1mgpA 313 3.18e+01 c.119.1.1 79098 1xioA 261 3.22e+01 1gewA 356 3.40e+01 1gewA c.67.1.1 60470 1n1jB 97 3.42e+01 a.22.1.3 79814 2b1eA 564 3.48e+01 1x6iA 91 3.51e+01 1h32A 261 3.54e+01 a.3.1.8,a.3.1.8 76618,76619 1fhuA 320 3.54e+01 1fhuA c.1.11.2,d.54.1.1 29234,38878 1ni3A 392 3.54e+01 c.37.1.8,d.15.10.2 80531,80532 1zrzA 364 3.58e+01 1i9gA 280 3.60e+01 c.66.1.13 62090 2fqmA 75 3.67e+01 1gt8D 1025 3.69e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70433,70434,70435,70436,70437 1e08A 371 3.74e+01 i.4.1.1 45914 1iciA 256 3.79e+01 1iciA c.31.1.5 62266 1o5hA 214 3.81e+01 a.191.1.1 92497 1w7lA 422 3.81e+01 c.67.1.1 109226 1jmtB 28 3.87e+01 1d8wA 426 3.87e+01 1de5A c.1.15.2 29394 1es2A 262 3.93e+01 1skf e.3.1.1 42680 1h2vC 771 4.15e+01 a.118.1.14,a.118.1.14,a.118.1.14 76592,76593,76594 2iu5A 195 4.18e+01 1w07A 659 4.22e+01 2esnA 310 4.32e+01 1ewfA 456 4.42e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 1ewqA 765 4.48e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1de6A 426 4.48e+01 1de5A c.1.15.2 29398 1bp1 456 4.53e+01 1bp1 d.83.1.1,d.83.1.1 40026,40027 1whrA 124 4.60e+01 1hz4A 373 4.78e+01 a.118.8.2 65960 1bf5A 545 4.81e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1a1iA 90 4.92e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 2fywA 267 4.96e+01 1rxqA 178 5.20e+01 a.213.1.1 105118 1yzxA 226 5.20e+01 1mp8A 281 5.33e+01 d.144.1.7 91384 1aisB 200 5.40e+01 1aisB a.74.1.2,a.74.1.2 18384,18385 1yy7A 213 5.48e+01 2ccmA 191 5.55e+01 1htxA 32 5.56e+01 1qfdA g.3.2.1 61261 1hp5A 512 5.64e+01 1hp4A c.1.8.6,d.92.2.1 61113,61114 1hp4A 512 5.64e+01 1hp4A c.1.8.6,d.92.2.1 61111,61112 1jakA 512 5.67e+01 c.1.8.6,d.92.2.1 66472,66473 1v54H 85 5.76e+01 a.51.1.1 100329 1g2fC 90 5.83e+01 k.12.1.1 60222 1fjxA 327 6.04e+01 6mhtA c.66.1.26 34228 2eiaB 206 6.19e+01 1eia a.28.3.1,a.73.1.1 16950,18330 1a1hA 90 6.20e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 3mhtA 327 6.25e+01 6mhtA c.66.1.26 34234 1n45A 233 6.26e+01 a.132.1.1 79981 1gulA 222 6.37e+01 1pgtA a.45.1.1,c.47.1.5 17675,32969 6mhtA 327 6.37e+01 6mhtA c.66.1.26 34226 1mzbA 136 6.37e+01 a.4.5.42 91497 1zzmA 259 6.38e+01 1br1B 150 6.46e+01 1wdcC a.39.1.5 17309 2lefA 86 6.65e+01 2lefA a.21.1.1 16433 3bifA 468 6.68e+01 1bif c.37.1.7,c.60.1.4 31962,34008 2bifA 469 6.69e+01 1bif c.37.1.7,c.60.1.4 31963,34009 1x91A 153 6.73e+01 1jy3N 53 6.82e+01 h.1.8.1 67446 1zaaC 87 6.93e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1aayA 90 7.00e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 2c7pA 327 7.07e+01 1bj8 109 7.14e+01 1bquA b.1.2.1 22070 1b35A 260 7.16e+01 1b35A b.121.4.1 23333 1xmeA 568 7.27e+01 1xfsA 178 7.36e+01 d.129.3.5 109589 1tqyB 415 7.39e+01 c.95.1.1,c.95.1.1 107247,107248 1w36C 1122 7.48e+01 1qrjB 199 7.55e+01 1qrjB a.28.3.1 16952 1m2kA 249 7.64e+01 c.31.1.5 84754 1ut7A 171 7.64e+01 b.143.1.1 99906 1m48A 133 7.67e+01 a.26.1.2 74443 1r6uA 437 7.88e+01 c.26.1.1 97163 1nkl 78 7.96e+01 1nkl a.64.1.1 18140 1fhvA 323 7.97e+01 1fhuA c.1.11.2,d.54.1.1 29235,38879 1es4A 262 7.99e+01 1skf e.3.1.1 42683 1r6wA 322 8.01e+01 c.1.11.2,d.54.1.1 97165,97166 1sra 151 8.03e+01 1sra a.39.1.3 17190 1yozA 116 8.05e+01 1m98A 317 8.10e+01 a.175.1.1,d.17.4.6 78866,78867 1esmA 316 8.20e+01 1esmA c.37.1.6 31953 1hmy 327 8.21e+01 6mhtA c.66.1.26 34229 1b0xA 94 8.22e+01 1b4fA a.60.1.2 17933 2aclB 244 8.22e+01 1or7A 194 8.44e+01 a.4.13.2,a.177.1.1 87332,87333 3crxA 343 8.48e+01 4crxA a.60.9.1,d.163.1.1 18101,42161 2g7gA 213 8.62e+01 1c75A 71 8.62e+01 451c a.3.1.1 15796 1q60A 99 8.63e+01 1tkeA 224 8.65e+01 1b8aA 438 8.70e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1fi2A 201 8.73e+01 1fi2A b.82.1.2 59845 1jk8B 190 8.74e+01 1iakB b.1.1.2,d.19.1.1 63147,63148 1otsA 465 8.80e+01 f.20.1.1 87415 1de5A 426 8.91e+01 1de5A c.1.15.2 29402 1acp 77 8.97e+01 1acp a.28.1.1 16931