# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2bc4A 211 4.71e-01 1m6jA 261 1.37e+00 c.1.1.1 78693 1bf5A 545 3.52e+00 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 2mev2 256 5.04e+00 1aym2 1xnpA 202 6.41e+00 2ar0A 541 6.91e+00 1vdiA 52 7.30e+00 1gqeA 365 7.65e+00 e.38.1.1 70351 1jpaA 312 7.93e+00 d.144.1.7 67011 1ngkA 128 8.80e+00 a.1.1.1 85673 1a1iA 90 9.05e+00 1aayA g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1w36C 1122 9.15e+00 1bj8 109 9.30e+00 1bquA b.1.2.1 22070 1guxA 218 9.38e+00 1guxA a.74.1.3 18388 1ewsA 32 9.51e+00 1ewsA g.9.1.1 59534 1zaaC 87 9.55e+00 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1aayA 90 9.72e+00 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1a1hA 90 1.01e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 1htxA 32 1.02e+01 1qfdA g.3.2.1 61261 1clvI 32 1.09e+01 1qfdA g.3.2.1 44075 2fmcA 82 1.12e+01 1qfdA 32 1.13e+01 1qfdA g.3.2.1 44076 1llmC 88 1.20e+01 g.37.1.1,g.37.1.1 91059,91060 1a1gA 90 1.29e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1ewqA 765 1.61e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1f5vA 240 1.64e+01 1bkjA d.90.1.1 40255 1voqa 90 1.78e+01 1yyvA 131 1.93e+01 1l4sA 112 1.94e+01 d.204.1.1 77693 1d4bA 122 1.94e+01 1d4bA d.15.2.1 37638 1ufyA 122 2.08e+01 d.79.1.2 88489 1u6pA 56 2.13e+01 1a6bB 40 2.13e+01 1a6bB g.40.1.1 45172 2fi1A 190 2.30e+01 1pvyA 227 2.30e+01 d.115.1.2 95195 2a6cA 83 2.35e+01 2myo 118 2.42e+01 2myo d.211.1.1 19175 1cksA 79 2.48e+01 1puc d.97.1.1 40683 1dzlA 505 2.71e+01 1dzlA b.121.6.1 23586 1bquA 215 2.95e+01 1bquA b.1.2.1,b.1.2.1 22066,22067 1vbd4 69 2.98e+01 1pvc4 1vbiA 344 3.09e+01 1xeaA 323 3.20e+01 c.2.1.3,d.81.1.5 109572,109573 1hdmA 201 3.32e+01 1iakA b.1.1.2,d.19.1.1 21583,38157 1d6gA 47 3.36e+01 1d6gA g.33.1.1 44976 1snnA 227 3.38e+01 d.115.1.2 105821 2ag4A 164 3.44e+01 1tuoA 464 3.57e+01 1m2kA 249 3.58e+01 c.31.1.5 84754 1pzqA 60 3.61e+01 a.34.3.1 95466 2bl0A 63 3.65e+01 2bkaA 242 3.71e+01 1vjkA 98 3.76e+01 d.15.3.1 108631 1jmtB 28 3.81e+01 1kfd 605 3.85e+01 1xwl c.55.3.5,e.8.1.1 33694,42987 1gnkA 112 4.05e+01 2pii d.58.5.1 39073 1myo 118 4.08e+01 2myo d.211.1.1 19174 1u5mA 73 4.20e+01 1bs2A 607 4.21e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 16930,31597,39563 1y2oA 250 4.27e+01 1fpqA 372 4.29e+01 1fpqA a.4.5.29,c.66.1.12 59947,59948 1efuA 385 4.35e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25682,25722,32115 1apyA 162 4.38e+01 1apyA d.153.1.5 42004 1ftt 68 4.48e+01 2hddA a.4.1.1 15997 1efcA 393 4.54e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25680,25720,32113 1ayg 80 4.62e+01 451c a.3.1.1 15831 1z2cB 383 4.64e+01 2f2eA 146 4.74e+01 1trrA 107 4.78e+01 1jhgA a.4.12.1 19017 1pvc2 271 4.85e+01 1aym2 1x6vA 630 4.93e+01 1g2fC 90 4.96e+01 k.12.1.1 60222 1tuaA 191 4.96e+01 d.51.1.1,d.51.1.1 107321,107322 1w7lA 422 5.01e+01 c.67.1.1 109226 1hynP 379 5.02e+01 1hynP d.112.1.2 61408 1ijgA 309 5.07e+01 1fouA e.27.1.1 62493 2fqmA 75 5.15e+01 1fouA 309 5.17e+01 1fouA e.27.1.1 43364 1r092 262 5.18e+01 1aym2 1w53A 84 5.31e+01 a.186.1.2 109175 2ag9A 164 5.38e+01 2if1 126 5.39e+01 2if1 d.64.1.1 39547 1thg 544 5.52e+01 1thg c.69.1.17 34763 1nsgB 94 5.54e+01 1nsgB a.24.7.1 16613 2bnxA 386 5.58e+01 1hdiA 413 5.64e+01 16pk c.86.1.1 60964 1g3gA 164 5.75e+01 1g6gA b.26.1.2 23918 17gsA 210 5.93e+01 1pgtA a.45.1.1,c.47.1.5 17524,32818 1dugA 234 5.99e+01 1b8xA a.45.1.1,c.47.1.5 17718,33012 1g13A 162 6.01e+01 1g13A b.95.1.1 60194 1aueA 100 6.13e+01 1nsgB a.24.7.1 16615 1ltdA 506 6.14e+01 1gox c.1.4.1,d.120.1.1 28618,41086 1iieA 75 6.20e+01 1iieA a.109.1.1 19039 1jb0I 38 6.46e+01 1jb0I f.23.17.1 62826 1akaA 401 6.51e+01 1ajsA c.67.1.1 34258 1ni3A 392 6.55e+01 c.37.1.8,d.15.10.2 80531,80532 1m13A 316 6.56e+01 a.123.1.1 84746 2gw8A 114 6.67e+01 1u4nA 310 6.81e+01 1bh9B 89 6.93e+01 1bh9B a.22.1.3 16485 2cs3A 93 6.99e+01 1v88A 130 7.02e+01 b.55.1.1 108423 7aatA 401 7.11e+01 1ajsA c.67.1.1 34250 1odeA 122 7.17e+01 d.79.1.2 86846 1pgtA 210 7.20e+01 1pgtA a.45.1.1,c.47.1.5 17515,32809 1im8A 244 7.36e+01 c.66.1.14 66212 2b7aA 293 7.38e+01 1f3yA 165 7.47e+01 d.113.1.1 59635 1gvnB 287 7.48e+01 c.37.1.21 76354 2a2rA 210 7.51e+01 1vj5A 555 7.58e+01 c.108.1.2,c.69.1.11 100799,100800 2esnA 310 7.63e+01 2fl4A 149 7.65e+01 1mioA 534 7.65e+01 1qguA c.92.2.3 35601 1oeyJ 107 7.66e+01 d.15.2.2 92804 1h5wA 309 7.81e+01 e.27.1.1 65635 1q9uA 130 7.84e+01 d.129.7.1 96314 1sszA 34 7.85e+01 j.35.1.1 105999 18gsA 210 7.90e+01 1pgtA a.45.1.1,c.47.1.5 17528,32822 2b7yA 182 7.93e+01 1mlvA 444 7.95e+01 a.166.1.1,b.85.7.3 79283,79284 1kmmA 424 8.05e+01 1adjA c.51.1.1,d.104.1.1 33174,40723 1cfzA 162 8.10e+01 1cfzA c.56.1.1 33754 2b4nA 42 8.11e+01 1kv4A 42 8.11e+01 j.4.1.3 73051 1aqwA 209 8.11e+01 1pgtA a.45.1.1,c.47.1.5 17517,32811 1pu5A 164 8.25e+01 b.95.1.1 104310 1cr6B 554 8.46e+01 1cr6B c.69.1.11,c.108.1.2 34688,43338 2fsqA 243 8.50e+01 1b35A 260 8.52e+01 1b35A b.121.4.1 23333 1im5A 180 8.63e+01 c.33.1.3 66211 1wazA 46 8.77e+01 1mhyD 521 8.80e+01 1mhyD a.25.1.2 16780 1x6iA 91 8.91e+01