# TARGET T0352 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0352.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 15.3431 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.003 0.001 0.001 0.025 0.044 0.926 2 T 0.015 0.009 0.004 0.067 0.064 0.842 3 T 0.008 0.004 0.017 0.413 0.096 0.462 4 H 0.005 0.002 0.016 0.720 0.077 0.181 5 D 0.002 0.001 0.011 0.937 0.025 0.024 6 R 0.002 0.001 0.007 0.973 0.010 0.008 7 V 0.001 0.001 0.003 0.988 0.005 0.004 8 R 0.001 0.001 0.002 0.993 0.003 0.002 9 L 0.001 0.001 0.002 0.994 0.002 0.001 10 Q 0.001 0.001 0.002 0.995 0.002 0.001 11 L 0.001 0.001 0.001 0.997 0.001 0.001 12 Q 0.001 0.001 0.001 0.997 0.001 0.001 13 A 0.001 0.001 0.001 0.995 0.002 0.001 14 L 0.001 0.001 0.002 0.993 0.003 0.002 15 E 0.001 0.001 0.001 0.997 0.001 0.001 16 A 0.001 0.001 0.001 0.997 0.001 0.001 17 L 0.001 0.001 0.001 0.995 0.002 0.002 18 L 0.001 0.001 0.002 0.992 0.004 0.002 19 R 0.001 0.001 0.003 0.985 0.008 0.003 20 E 0.001 0.001 0.004 0.964 0.016 0.015 21 H 0.001 0.001 0.012 0.821 0.061 0.104 22 Q 0.007 0.002 0.046 0.281 0.252 0.411 23 H 0.024 0.012 0.115 0.205 0.312 0.332 24 W 0.061 0.033 0.117 0.245 0.295 0.250 25 R 0.062 0.020 0.061 0.300 0.262 0.295 26 N 0.051 0.016 0.046 0.199 0.307 0.381 27 D 0.039 0.014 0.021 0.068 0.327 0.530 28 E 0.020 0.015 0.008 0.032 0.282 0.643 29 P 0.016 0.030 0.007 0.023 0.240 0.685 30 Q 0.011 0.027 0.015 0.049 0.259 0.640 31 P 0.001 0.001 0.602 0.258 0.095 0.043 32 H 0.002 0.001 0.727 0.173 0.076 0.021 33 Q 0.003 0.002 0.768 0.141 0.070 0.015 34 F 0.014 0.041 0.209 0.295 0.248 0.193 35 N 0.021 0.021 0.093 0.188 0.434 0.243 36 S 0.012 0.008 0.041 0.124 0.507 0.307 37 T 0.021 0.013 0.024 0.070 0.427 0.445 38 Q 0.044 0.011 0.021 0.013 0.449 0.462 39 P 0.042 0.009 0.031 0.015 0.346 0.557 40 F 0.296 0.053 0.037 0.025 0.220 0.368 41 F 0.601 0.030 0.018 0.040 0.128 0.184 42 M 0.674 0.038 0.016 0.057 0.069 0.147 43 D 0.385 0.024 0.014 0.099 0.223 0.255 44 T 0.154 0.013 0.013 0.101 0.308 0.411 45 M 0.063 0.021 0.010 0.098 0.312 0.495 46 E 0.029 0.016 0.009 0.134 0.223 0.589 47 P 0.004 0.001 0.025 0.866 0.068 0.036 48 L 0.010 0.002 0.030 0.892 0.045 0.022 49 E 0.018 0.002 0.031 0.906 0.034 0.009 50 W 0.020 0.002 0.022 0.912 0.033 0.010 51 L 0.014 0.001 0.014 0.941 0.023 0.007 52 Q 0.019 0.001 0.011 0.938 0.020 0.011 53 W 0.009 0.001 0.008 0.966 0.010 0.007 54 V 0.015 0.001 0.009 0.955 0.011 0.008 55 L 0.013 0.002 0.012 0.943 0.014 0.017 56 I 0.011 0.002 0.016 0.893 0.038 0.040 57 P 0.005 0.001 0.025 0.871 0.058 0.040 58 R 0.004 0.002 0.030 0.890 0.043 0.031 59 M 0.001 0.001 0.030 0.937 0.018 0.012 60 H 0.001 0.001 0.042 0.936 0.015 0.006 61 D 0.001 0.001 0.036 0.933 0.022 0.007 62 L 0.001 0.002 0.021 0.936 0.024 0.016 63 L 0.002 0.002 0.023 0.908 0.041 0.025 64 D 0.003 0.002 0.028 0.827 0.089 0.051 65 N 0.004 0.003 0.028 0.634 0.165 0.166 66 K 0.005 0.005 0.045 0.190 0.269 0.487 67 Q 0.006 0.004 0.008 0.007 0.250 0.725 68 P 0.013 0.014 0.013 0.008 0.217 0.735 69 L 0.014 0.035 0.011 0.007 0.247 0.686 70 P 0.010 0.010 0.063 0.025 0.543 0.349 71 G 0.010 0.002 0.187 0.045 0.549 0.208 72 A 0.046 0.006 0.252 0.090 0.442 0.164 73 F 0.136 0.022 0.144 0.132 0.344 0.221 74 A 0.206 0.067 0.045 0.206 0.152 0.323 75 V 0.223 0.036 0.030 0.374 0.086 0.250 76 A 0.159 0.011 0.036 0.423 0.110 0.260 77 P 0.093 0.005 0.042 0.561 0.110 0.188 78 Y 0.051 0.006 0.061 0.764 0.059 0.058 79 Y 0.040 0.003 0.026 0.880 0.035 0.016 80 E 0.037 0.002 0.038 0.883 0.030 0.010 81 M 0.022 0.001 0.028 0.918 0.025 0.006 82 A 0.010 0.002 0.015 0.942 0.024 0.009 83 L 0.006 0.003 0.014 0.908 0.044 0.026 84 A 0.005 0.002 0.036 0.777 0.123 0.057 85 T 0.004 0.003 0.037 0.486 0.259 0.210 86 D 0.006 0.008 0.034 0.211 0.351 0.390 87 H 0.007 0.006 0.035 0.147 0.375 0.430 88 P 0.004 0.005 0.086 0.398 0.257 0.249 89 Q 0.007 0.005 0.085 0.681 0.116 0.106 90 R 0.002 0.001 0.028 0.917 0.027 0.025 91 A 0.002 0.001 0.015 0.957 0.012 0.012 92 L 0.004 0.001 0.009 0.974 0.007 0.006 93 I 0.005 0.001 0.006 0.978 0.007 0.004 94 L 0.003 0.001 0.004 0.984 0.007 0.003 95 A 0.002 0.001 0.005 0.984 0.007 0.002 96 E 0.001 0.001 0.004 0.987 0.005 0.003 97 L 0.001 0.001 0.005 0.983 0.007 0.004 98 E 0.001 0.001 0.005 0.982 0.008 0.004 99 K 0.001 0.001 0.005 0.976 0.011 0.007 100 L 0.001 0.001 0.007 0.965 0.014 0.011 101 D 0.002 0.001 0.022 0.955 0.016 0.006 102 A 0.002 0.001 0.029 0.947 0.016 0.006 103 L 0.003 0.001 0.022 0.936 0.016 0.022 104 F 0.004 0.004 0.015 0.896 0.028 0.053 105 A 0.010 0.004 0.023 0.670 0.118 0.175 106 D 0.011 0.004 0.045 0.363 0.235 0.342 107 D 0.010 0.004 0.084 0.172 0.343 0.387 108 A 0.010 0.007 0.050 0.114 0.260 0.560 109 S 0.002 0.001 0.001 0.003 0.036 0.958