# TARGET T0352 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0352.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 15.3431 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.007 0.947 0.001 0.001 0.008 0.001 0.001 0.002 0.021 0.004 0.003 0.006 2 T 0.001 0.022 0.916 0.001 0.003 0.017 0.001 0.001 0.002 0.015 0.011 0.003 0.010 3 T 0.001 0.015 0.586 0.001 0.020 0.117 0.001 0.001 0.003 0.135 0.110 0.005 0.008 4 H 0.001 0.002 0.346 0.001 0.017 0.466 0.001 0.001 0.001 0.100 0.062 0.001 0.004 5 D 0.001 0.001 0.032 0.001 0.011 0.899 0.001 0.001 0.001 0.035 0.022 0.001 0.001 6 R 0.001 0.003 0.027 0.001 0.009 0.937 0.001 0.001 0.001 0.007 0.016 0.001 0.001 7 V 0.001 0.001 0.010 0.001 0.003 0.977 0.001 0.001 0.001 0.003 0.006 0.001 0.001 8 R 0.001 0.001 0.003 0.001 0.001 0.991 0.001 0.001 0.001 0.002 0.002 0.001 0.001 9 L 0.001 0.001 0.002 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.004 0.001 0.001 10 Q 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.005 0.001 0.001 11 L 0.001 0.001 0.002 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.002 0.001 0.001 12 Q 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 A 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.002 0.001 0.001 14 L 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 E 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 A 0.001 0.001 0.001 0.001 0.001 0.997 0.001 0.001 0.001 0.001 0.002 0.001 0.001 17 L 0.001 0.001 0.001 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.005 0.001 0.001 18 L 0.001 0.001 0.001 0.001 0.001 0.983 0.001 0.001 0.001 0.001 0.014 0.001 0.001 19 R 0.001 0.001 0.004 0.001 0.002 0.938 0.001 0.001 0.001 0.004 0.052 0.001 0.001 20 E 0.001 0.001 0.007 0.001 0.004 0.852 0.001 0.001 0.001 0.005 0.132 0.001 0.001 21 H 0.001 0.001 0.055 0.001 0.016 0.681 0.001 0.001 0.001 0.034 0.213 0.001 0.001 22 Q 0.001 0.003 0.086 0.001 0.082 0.377 0.001 0.001 0.001 0.057 0.392 0.001 0.001 23 H 0.001 0.008 0.189 0.002 0.165 0.293 0.001 0.001 0.005 0.095 0.231 0.004 0.008 24 W 0.001 0.016 0.202 0.001 0.203 0.276 0.001 0.001 0.015 0.090 0.175 0.006 0.014 25 R 0.002 0.033 0.250 0.002 0.059 0.200 0.001 0.003 0.020 0.197 0.193 0.016 0.022 26 N 0.002 0.029 0.404 0.002 0.039 0.115 0.001 0.002 0.014 0.194 0.166 0.008 0.024 27 D 0.001 0.013 0.391 0.003 0.018 0.040 0.001 0.001 0.005 0.391 0.127 0.004 0.007 28 E 0.001 0.008 0.667 0.001 0.006 0.008 0.001 0.001 0.002 0.206 0.094 0.003 0.005 29 P 0.001 0.025 0.832 0.001 0.003 0.005 0.001 0.001 0.001 0.106 0.020 0.003 0.004 30 Q 0.001 0.031 0.852 0.001 0.003 0.011 0.001 0.001 0.001 0.083 0.006 0.004 0.007 31 P 0.001 0.005 0.055 0.001 0.368 0.429 0.001 0.001 0.001 0.026 0.112 0.001 0.003 32 H 0.001 0.003 0.032 0.001 0.497 0.309 0.001 0.001 0.001 0.027 0.125 0.002 0.002 33 Q 0.001 0.005 0.028 0.001 0.586 0.262 0.001 0.001 0.001 0.020 0.089 0.001 0.005 34 F 0.003 0.028 0.126 0.002 0.235 0.370 0.001 0.002 0.006 0.051 0.150 0.007 0.019 35 N 0.003 0.019 0.192 0.010 0.094 0.155 0.001 0.001 0.005 0.114 0.374 0.013 0.019 36 S 0.002 0.020 0.320 0.004 0.047 0.069 0.001 0.001 0.008 0.303 0.185 0.011 0.030 37 T 0.002 0.031 0.351 0.004 0.025 0.053 0.001 0.001 0.006 0.372 0.120 0.009 0.025 38 Q 0.001 0.018 0.495 0.003 0.008 0.024 0.001 0.001 0.008 0.391 0.027 0.018 0.007 39 P 0.001 0.019 0.480 0.010 0.082 0.069 0.001 0.001 0.009 0.116 0.185 0.002 0.026 40 F 0.007 0.045 0.237 0.009 0.135 0.098 0.003 0.005 0.023 0.184 0.217 0.019 0.018 41 F 0.016 0.050 0.215 0.006 0.195 0.132 0.006 0.011 0.052 0.099 0.148 0.021 0.048 42 M 0.015 0.024 0.264 0.007 0.162 0.142 0.006 0.010 0.040 0.093 0.169 0.023 0.045 43 D 0.008 0.023 0.194 0.007 0.104 0.109 0.003 0.003 0.023 0.190 0.276 0.031 0.030 44 T 0.005 0.019 0.264 0.006 0.048 0.067 0.002 0.001 0.021 0.259 0.252 0.008 0.047 45 M 0.003 0.026 0.341 0.001 0.013 0.172 0.001 0.001 0.011 0.322 0.056 0.036 0.016 46 E 0.001 0.022 0.470 0.001 0.012 0.329 0.001 0.001 0.004 0.087 0.043 0.005 0.024 47 P 0.001 0.003 0.061 0.001 0.026 0.829 0.001 0.001 0.001 0.021 0.054 0.001 0.003 48 L 0.001 0.001 0.022 0.001 0.015 0.921 0.001 0.001 0.001 0.014 0.025 0.001 0.001 49 E 0.001 0.001 0.016 0.001 0.008 0.938 0.001 0.001 0.001 0.014 0.020 0.001 0.001 50 W 0.001 0.001 0.008 0.001 0.003 0.969 0.001 0.001 0.001 0.003 0.013 0.001 0.002 51 L 0.001 0.001 0.011 0.001 0.002 0.970 0.001 0.001 0.001 0.004 0.010 0.001 0.001 52 Q 0.001 0.001 0.004 0.001 0.002 0.981 0.001 0.001 0.001 0.005 0.006 0.001 0.001 53 W 0.001 0.001 0.006 0.001 0.003 0.966 0.001 0.001 0.001 0.004 0.016 0.001 0.002 54 V 0.001 0.001 0.009 0.001 0.004 0.925 0.001 0.001 0.001 0.006 0.049 0.001 0.001 55 L 0.001 0.001 0.029 0.001 0.005 0.846 0.001 0.001 0.003 0.016 0.096 0.001 0.002 56 I 0.001 0.001 0.061 0.001 0.008 0.851 0.001 0.001 0.001 0.032 0.045 0.001 0.001 57 P 0.001 0.001 0.029 0.001 0.019 0.849 0.001 0.001 0.001 0.019 0.081 0.001 0.001 58 R 0.001 0.001 0.022 0.001 0.013 0.908 0.001 0.001 0.001 0.014 0.041 0.001 0.001 59 M 0.001 0.001 0.008 0.001 0.005 0.970 0.001 0.001 0.001 0.003 0.013 0.001 0.001 60 H 0.001 0.001 0.003 0.001 0.004 0.986 0.001 0.001 0.001 0.002 0.005 0.001 0.001 61 D 0.001 0.001 0.001 0.001 0.004 0.988 0.001 0.001 0.001 0.001 0.005 0.001 0.001 62 L 0.001 0.001 0.001 0.001 0.005 0.986 0.001 0.001 0.001 0.001 0.007 0.001 0.001 63 L 0.001 0.001 0.004 0.001 0.003 0.966 0.001 0.001 0.001 0.004 0.022 0.001 0.001 64 D 0.001 0.001 0.004 0.001 0.005 0.865 0.001 0.001 0.001 0.004 0.120 0.001 0.001 65 N 0.001 0.001 0.014 0.001 0.006 0.478 0.001 0.001 0.001 0.029 0.473 0.001 0.001 66 K 0.001 0.002 0.193 0.001 0.008 0.085 0.001 0.001 0.001 0.157 0.555 0.001 0.001 67 Q 0.001 0.008 0.720 0.001 0.002 0.007 0.001 0.001 0.001 0.230 0.030 0.001 0.001 68 P 0.001 0.024 0.812 0.001 0.006 0.009 0.001 0.001 0.003 0.097 0.042 0.001 0.006 69 L 0.001 0.024 0.654 0.001 0.006 0.010 0.001 0.001 0.004 0.270 0.020 0.007 0.002 70 P 0.001 0.012 0.459 0.002 0.067 0.078 0.001 0.001 0.003 0.180 0.192 0.001 0.007 71 G 0.001 0.009 0.176 0.002 0.119 0.147 0.001 0.001 0.003 0.144 0.393 0.003 0.002 72 A 0.002 0.011 0.222 0.003 0.156 0.274 0.001 0.001 0.008 0.138 0.164 0.006 0.013 73 F 0.008 0.016 0.289 0.002 0.141 0.278 0.003 0.002 0.022 0.086 0.095 0.019 0.037 74 A 0.019 0.060 0.214 0.003 0.055 0.305 0.010 0.006 0.042 0.067 0.123 0.046 0.049 75 V 0.023 0.027 0.183 0.003 0.045 0.426 0.006 0.004 0.026 0.081 0.089 0.020 0.068 76 A 0.003 0.002 0.114 0.001 0.015 0.763 0.001 0.001 0.003 0.049 0.026 0.014 0.009 77 P 0.001 0.001 0.019 0.001 0.007 0.943 0.001 0.001 0.001 0.007 0.019 0.001 0.003 78 Y 0.002 0.001 0.008 0.001 0.003 0.974 0.001 0.001 0.001 0.003 0.007 0.001 0.002 79 Y 0.001 0.001 0.005 0.001 0.002 0.984 0.001 0.001 0.001 0.002 0.002 0.001 0.002 80 E 0.001 0.001 0.002 0.001 0.002 0.987 0.001 0.001 0.001 0.001 0.003 0.001 0.001 81 M 0.001 0.001 0.003 0.001 0.006 0.975 0.001 0.001 0.001 0.002 0.010 0.001 0.002 82 A 0.001 0.001 0.004 0.001 0.010 0.956 0.001 0.001 0.001 0.003 0.023 0.001 0.001 83 L 0.001 0.003 0.013 0.001 0.011 0.894 0.001 0.001 0.001 0.011 0.064 0.001 0.002 84 A 0.001 0.003 0.032 0.001 0.023 0.709 0.001 0.001 0.001 0.022 0.206 0.001 0.002 85 T 0.001 0.002 0.078 0.001 0.022 0.321 0.001 0.001 0.001 0.081 0.494 0.001 0.001 86 D 0.001 0.002 0.257 0.001 0.027 0.161 0.001 0.001 0.001 0.114 0.436 0.001 0.002 87 H 0.001 0.004 0.515 0.001 0.009 0.080 0.001 0.001 0.001 0.333 0.056 0.002 0.001 88 P 0.001 0.005 0.522 0.001 0.025 0.196 0.001 0.001 0.001 0.107 0.142 0.001 0.002 89 Q 0.001 0.006 0.154 0.001 0.083 0.520 0.001 0.001 0.001 0.070 0.162 0.001 0.002 90 R 0.001 0.001 0.061 0.001 0.043 0.824 0.001 0.001 0.001 0.030 0.037 0.001 0.001 91 A 0.001 0.001 0.026 0.001 0.016 0.927 0.001 0.001 0.001 0.015 0.012 0.001 0.001 92 L 0.001 0.003 0.023 0.001 0.011 0.936 0.001 0.001 0.004 0.006 0.012 0.001 0.003 93 I 0.001 0.001 0.012 0.001 0.004 0.960 0.001 0.001 0.004 0.003 0.011 0.001 0.002 94 L 0.001 0.001 0.007 0.001 0.002 0.981 0.001 0.001 0.001 0.003 0.005 0.001 0.001 95 A 0.001 0.001 0.006 0.001 0.002 0.982 0.001 0.001 0.001 0.003 0.006 0.001 0.001 96 E 0.001 0.001 0.005 0.001 0.001 0.985 0.001 0.001 0.001 0.002 0.007 0.001 0.001 97 L 0.001 0.001 0.004 0.001 0.001 0.988 0.001 0.001 0.001 0.001 0.005 0.001 0.001 98 E 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.003 0.001 0.001 99 K 0.001 0.001 0.001 0.001 0.001 0.992 0.001 0.001 0.001 0.001 0.007 0.001 0.001 100 L 0.001 0.001 0.001 0.001 0.002 0.990 0.001 0.001 0.001 0.001 0.007 0.001 0.001 101 D 0.001 0.001 0.002 0.001 0.006 0.975 0.001 0.001 0.001 0.004 0.014 0.001 0.001 102 A 0.001 0.001 0.002 0.001 0.012 0.942 0.001 0.001 0.001 0.002 0.041 0.001 0.001 103 L 0.001 0.001 0.005 0.001 0.007 0.880 0.001 0.001 0.001 0.007 0.100 0.001 0.001 104 F 0.001 0.006 0.060 0.001 0.012 0.600 0.001 0.001 0.001 0.058 0.262 0.001 0.001 105 A 0.001 0.015 0.207 0.001 0.054 0.349 0.001 0.001 0.001 0.120 0.245 0.003 0.004 106 D 0.001 0.006 0.310 0.001 0.050 0.197 0.001 0.001 0.001 0.181 0.248 0.002 0.004 107 D 0.001 0.004 0.265 0.001 0.059 0.097 0.001 0.001 0.001 0.155 0.414 0.001 0.003 108 A 0.001 0.006 0.554 0.001 0.036 0.065 0.001 0.001 0.001 0.111 0.220 0.002 0.004 109 S 0.001 0.003 0.920 0.001 0.009 0.009 0.001 0.001 0.001 0.043 0.009 0.002 0.003