# TARGET T0352 # Using neural net t06-IDGaaH13-3-13-7-13-9-13-11-bys-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 11 (1 Bystroff ) # The input amino acid frequencies were determined from # alignment T0352.t06-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 15.3431 # Pos AA H E P G Y N L T D S C 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.186 0.260 0.302 0.062 0.083 0.035 0.020 0.010 0.030 0.010 0.001 2 T 0.268 0.182 0.327 0.094 0.054 0.039 0.010 0.004 0.013 0.009 0.001 3 T 0.385 0.188 0.139 0.186 0.037 0.026 0.010 0.004 0.019 0.006 0.001 4 H 0.701 0.042 0.138 0.046 0.017 0.015 0.013 0.004 0.010 0.015 0.001 5 D 0.916 0.004 0.013 0.029 0.001 0.011 0.016 0.006 0.002 0.001 0.001 6 R 0.961 0.003 0.004 0.024 0.001 0.004 0.001 0.001 0.002 0.001 0.001 7 V 0.981 0.001 0.002 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 8 R 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 9 L 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 10 Q 0.987 0.001 0.001 0.012 0.001 0.001 0.001 0.001 0.001 0.001 0.001 11 L 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 12 Q 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 A 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 L 0.995 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 E 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 A 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 17 L 0.996 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 18 L 0.977 0.001 0.001 0.021 0.001 0.001 0.001 0.001 0.001 0.001 0.001 19 R 0.985 0.001 0.001 0.009 0.001 0.001 0.003 0.001 0.001 0.001 0.001 20 E 0.942 0.004 0.003 0.046 0.001 0.002 0.001 0.001 0.001 0.001 0.001 21 H 0.544 0.013 0.021 0.403 0.003 0.004 0.003 0.001 0.008 0.001 0.001 22 Q 0.305 0.010 0.034 0.060 0.008 0.028 0.484 0.053 0.013 0.004 0.001 23 H 0.597 0.083 0.061 0.210 0.016 0.018 0.006 0.001 0.006 0.001 0.001 24 W 0.518 0.102 0.162 0.144 0.026 0.023 0.007 0.006 0.010 0.003 0.001 25 R 0.395 0.144 0.190 0.157 0.022 0.047 0.018 0.003 0.021 0.003 0.001 26 N 0.303 0.139 0.107 0.312 0.030 0.033 0.034 0.009 0.031 0.001 0.001 27 D 0.113 0.267 0.321 0.087 0.048 0.059 0.033 0.003 0.066 0.002 0.001 28 E 0.030 0.127 0.666 0.003 0.011 0.042 0.014 0.001 0.102 0.001 0.003 29 P 0.063 0.004 0.868 0.008 0.001 0.018 0.001 0.001 0.001 0.001 0.037 30 Q 0.016 0.073 0.815 0.001 0.022 0.033 0.002 0.001 0.033 0.003 0.001 31 P 0.901 0.002 0.062 0.022 0.001 0.006 0.001 0.001 0.001 0.001 0.003 32 H 0.832 0.009 0.026 0.100 0.005 0.004 0.012 0.007 0.002 0.002 0.001 33 Q 0.549 0.008 0.026 0.398 0.004 0.006 0.004 0.002 0.003 0.001 0.001 34 F 0.322 0.075 0.349 0.131 0.017 0.042 0.027 0.015 0.016 0.006 0.001 35 N 0.284 0.080 0.104 0.383 0.021 0.042 0.046 0.008 0.031 0.002 0.001 36 S 0.143 0.194 0.383 0.102 0.131 0.021 0.008 0.004 0.008 0.005 0.001 37 T 0.259 0.076 0.090 0.505 0.021 0.013 0.012 0.008 0.014 0.002 0.001 38 Q 0.012 0.371 0.343 0.001 0.039 0.019 0.021 0.001 0.194 0.001 0.001 39 P 0.091 0.008 0.784 0.006 0.001 0.049 0.001 0.001 0.001 0.001 0.060 40 F 0.154 0.368 0.189 0.064 0.114 0.037 0.017 0.019 0.033 0.006 0.001 41 F 0.172 0.372 0.196 0.044 0.077 0.074 0.016 0.005 0.037 0.007 0.001 42 M 0.243 0.356 0.131 0.120 0.067 0.042 0.007 0.002 0.027 0.003 0.001 43 D 0.248 0.089 0.148 0.124 0.065 0.165 0.091 0.008 0.051 0.010 0.002 44 T 0.314 0.072 0.071 0.472 0.019 0.029 0.006 0.002 0.012 0.001 0.002 45 M 0.305 0.134 0.370 0.042 0.064 0.014 0.029 0.015 0.011 0.015 0.001 46 E 0.491 0.023 0.356 0.010 0.011 0.053 0.012 0.003 0.027 0.009 0.005 47 P 0.993 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 48 L 0.982 0.001 0.001 0.016 0.001 0.001 0.001 0.001 0.001 0.001 0.001 49 E 0.982 0.001 0.002 0.014 0.001 0.001 0.001 0.001 0.001 0.001 0.001 50 W 0.991 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 51 L 0.994 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 52 Q 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 0.001 53 W 0.998 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 54 V 0.996 0.001 0.001 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 55 L 0.940 0.002 0.001 0.055 0.001 0.001 0.001 0.001 0.001 0.001 0.001 56 I 0.933 0.005 0.011 0.018 0.001 0.010 0.005 0.001 0.016 0.001 0.001 57 P 0.979 0.001 0.006 0.009 0.001 0.001 0.001 0.002 0.001 0.001 0.001 58 R 0.957 0.001 0.002 0.030 0.001 0.005 0.002 0.001 0.001 0.001 0.001 59 M 0.977 0.001 0.001 0.020 0.001 0.001 0.001 0.001 0.001 0.001 0.001 60 H 0.996 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 61 D 0.994 0.001 0.001 0.005 0.001 0.001 0.001 0.001 0.001 0.001 0.001 62 L 0.994 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 63 L 0.969 0.002 0.001 0.027 0.001 0.001 0.001 0.001 0.001 0.001 0.001 64 D 0.884 0.006 0.009 0.089 0.001 0.004 0.003 0.001 0.002 0.001 0.001 65 N 0.256 0.016 0.026 0.671 0.004 0.003 0.016 0.005 0.002 0.001 0.001 66 K 0.028 0.004 0.009 0.087 0.002 0.025 0.807 0.027 0.010 0.001 0.001 67 Q 0.015 0.514 0.259 0.001 0.024 0.018 0.008 0.001 0.160 0.001 0.001 68 P 0.046 0.003 0.827 0.005 0.001 0.074 0.001 0.001 0.002 0.001 0.043 69 L 0.034 0.076 0.792 0.001 0.006 0.026 0.005 0.001 0.058 0.001 0.001 70 P 0.155 0.003 0.774 0.009 0.001 0.018 0.001 0.001 0.001 0.001 0.039 71 G 0.391 0.018 0.106 0.068 0.057 0.004 0.020 0.137 0.002 0.196 0.001 72 A 0.459 0.100 0.119 0.193 0.051 0.028 0.019 0.011 0.015 0.006 0.001 73 F 0.267 0.245 0.170 0.207 0.060 0.019 0.010 0.005 0.013 0.004 0.001 74 A 0.350 0.145 0.223 0.053 0.070 0.078 0.023 0.012 0.036 0.009 0.001 75 V 0.464 0.218 0.158 0.092 0.013 0.034 0.002 0.001 0.015 0.001 0.002 76 A 0.725 0.041 0.159 0.003 0.009 0.016 0.006 0.002 0.032 0.005 0.001 77 P 0.966 0.001 0.018 0.005 0.001 0.003 0.001 0.001 0.001 0.001 0.007 78 Y 0.976 0.002 0.003 0.013 0.001 0.002 0.001 0.001 0.001 0.001 0.001 79 Y 0.965 0.007 0.005 0.020 0.001 0.001 0.001 0.001 0.001 0.001 0.001 80 E 0.989 0.003 0.002 0.004 0.001 0.001 0.001 0.001 0.001 0.001 0.001 81 M 0.985 0.003 0.001 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 82 A 0.981 0.002 0.001 0.015 0.001 0.001 0.001 0.001 0.001 0.001 0.001 83 L 0.952 0.004 0.005 0.033 0.001 0.002 0.001 0.001 0.001 0.001 0.001 84 A 0.838 0.015 0.020 0.113 0.003 0.006 0.003 0.001 0.002 0.001 0.001 85 T 0.612 0.019 0.058 0.273 0.009 0.008 0.011 0.006 0.003 0.002 0.001 86 D 0.260 0.028 0.073 0.445 0.008 0.068 0.080 0.008 0.029 0.002 0.001 87 H 0.103 0.175 0.310 0.009 0.027 0.043 0.023 0.001 0.307 0.003 0.001 88 P 0.826 0.001 0.118 0.032 0.001 0.010 0.001 0.001 0.001 0.001 0.011 89 Q 0.702 0.016 0.034 0.170 0.007 0.017 0.020 0.023 0.007 0.003 0.001 90 R 0.844 0.023 0.057 0.055 0.004 0.007 0.004 0.001 0.003 0.001 0.001 91 A 0.919 0.011 0.027 0.017 0.003 0.005 0.009 0.005 0.001 0.002 0.001 92 L 0.957 0.006 0.013 0.015 0.001 0.005 0.001 0.001 0.001 0.001 0.001 93 I 0.983 0.003 0.004 0.009 0.001 0.001 0.001 0.001 0.001 0.001 0.001 94 L 0.993 0.002 0.002 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 95 A 0.994 0.001 0.001 0.003 0.001 0.001 0.001 0.001 0.001 0.001 0.001 96 E 0.977 0.001 0.001 0.019 0.001 0.001 0.001 0.001 0.001 0.001 0.001 97 L 0.991 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 98 E 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 99 K 0.988 0.001 0.001 0.010 0.001 0.001 0.001 0.001 0.001 0.001 0.001 100 L 0.991 0.001 0.001 0.007 0.001 0.001 0.001 0.001 0.001 0.001 0.001 101 D 0.997 0.001 0.001 0.002 0.001 0.001 0.001 0.001 0.001 0.001 0.001 102 A 0.993 0.001 0.001 0.006 0.001 0.001 0.001 0.001 0.001 0.001 0.001 103 L 0.968 0.001 0.001 0.031 0.001 0.001 0.001 0.001 0.001 0.001 0.001 104 F 0.779 0.007 0.013 0.186 0.001 0.005 0.002 0.002 0.004 0.001 0.001 105 A 0.564 0.038 0.118 0.198 0.009 0.024 0.026 0.006 0.010 0.006 0.001 106 D 0.425 0.048 0.170 0.220 0.023 0.032 0.046 0.012 0.014 0.010 0.001 107 D 0.325 0.039 0.085 0.333 0.017 0.062 0.097 0.011 0.028 0.003 0.001 108 A 0.327 0.086 0.137 0.246 0.037 0.046 0.064 0.016 0.032 0.007 0.001 109 S 0.296 0.123 0.239 0.166 0.055 0.033 0.034 0.016 0.019 0.018 0.001