# List of top-scoring protein chains for t06-100-40-40-str2+CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jpaA 312 2.75e-01 d.144.1.7 67011 2furA 209 2.39e+00 1zd3A 555 2.55e+00 1sedA 117 3.14e+00 a.219.1.1 105449 1m6kA 251 3.51e+00 e.3.1.1 78695 1ugpA 203 3.70e+00 d.149.1.1 107831 1m9xC 146 4.40e+00 a.73.1.1 84907 1jhgA 101 4.70e+00 1jhgA a.4.12.1 19009 1sz2A 332 5.58e+00 1zboA 210 6.25e+00 1opjA 293 6.79e+00 d.144.1.7 87230 1zejA 293 6.85e+00 1hx1B 114 6.95e+00 1hx1B a.7.7.1 61350 1k2xA 177 7.19e+00 d.153.1.5 90929 2iu5A 195 7.64e+00 1ufzA 83 8.07e+00 a.5.9.1 107821 1kr7A 110 8.63e+00 a.1.1.4 72890 1uekA 275 8.83e+00 d.14.1.5,d.58.26.5 88483,88484 1umgA 362 9.53e+00 d.280.1.1 107956 1y0uA 96 9.66e+00 1b4pA 217 9.86e+00 a.45.1.1,c.47.1.5 83158,83159 2ccmA 191 1.05e+01 1zv1A 65 1.06e+01 1jeyA 609 1.10e+01 1jeqA b.131.1.1,c.62.1.3 90370,90371 1or7A 194 1.12e+01 a.4.13.2,a.177.1.1 87332,87333 1vyiA 112 1.13e+01 1k6iA 352 1.16e+01 c.2.1.2 68223 1t8kA 77 1.19e+01 a.28.1.1 106666 1e6iA 121 1.22e+01 1b91A a.29.2.1 16969 2bbrA 195 1.25e+01 1jogA 146 1.25e+01 a.24.16.2 77142 1a6q 382 1.25e+01 1a6q a.159.1.1,d.219.1.1 75801,75802 1hssA 124 1.27e+01 1bea a.52.1.2 17819 1b5eA 246 1.28e+01 1b5eA d.117.1.1 41056 1jhdA 396 1.29e+01 b.122.1.3,c.26.1.5 66712,66713 1jy2N 53 1.34e+01 h.1.8.1 67440 1x9zA 188 1.35e+01 1ux5A 411 1.36e+01 a.207.1.1 100144 1mzbA 136 1.40e+01 a.4.5.42 91497 2ew2A 316 1.47e+01 1xgkA 352 1.51e+01 1m7sA 484 1.52e+01 e.5.1.1 74574 1u96A 69 1.52e+01 1li5A 461 1.54e+01 a.27.1.1,c.26.1.1 73912,73913 1yqyA 523 1.54e+01 2avuE 192 1.55e+01 1yw0A 276 1.56e+01 1di6A 195 1.57e+01 1di6A c.57.1.1 33863 2end 138 1.58e+01 2end a.18.1.1 16400 1o8rA 94 1.59e+01 d.234.1.1 86677 1x6vA 630 1.65e+01 2aheA 267 1.89e+01 2fu4A 83 1.89e+01 1kblA 873 1.90e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1iyhA 198 1.95e+01 a.45.1.1,c.47.1.5 83790,83791 1xo0A 324 1.98e+01 1yarA 233 2.09e+01 1vgmA 378 2.10e+01 1o9rA 162 2.10e+01 a.25.1.1 86706 1eu8A 409 2.11e+01 1eu8A c.94.1.1 59502 1t0cA 31 2.11e+01 1ggzA 148 2.13e+01 a.39.1.5 70176 1l8dA 112 2.13e+01 h.4.12.1 73687 2c4jA 218 2.13e+01 1h6hA 143 2.18e+01 d.189.1.1 65681 1vqoP 149 2.22e+01 5csmA 256 2.25e+01 5csmA a.130.1.2 19494 1kq6A 141 2.27e+01 d.189.1.1 91020 1amuA 563 2.30e+01 1amuA e.23.1.1 43351 1v54C 261 2.33e+01 f.25.1.1 100324 1qo7A 394 2.37e+01 1qo7A c.69.1.11 34697 1tns 76 2.42e+01 1qpmA a.6.1.7 16228 1ylmA 144 2.55e+01 1pdo 135 2.57e+01 1pdo c.54.1.1 33376 2cj4A 150 2.61e+01 2a6hE 99 2.62e+01 1zq9A 285 2.65e+01 2afdA 88 2.70e+01 1o65A 246 2.72e+01 b.58.1.2 92544 1bd8 156 2.77e+01 1bd8 d.211.1.1 19157 1tdpA 111 2.80e+01 a.29.8.1 106781 1lwbA 122 2.83e+01 a.133.1.3 84728 1o5kA 306 2.92e+01 c.1.10.1 92504 1obbA 480 2.93e+01 c.2.1.5,d.162.1.2 86760,86761 1vkmA 297 3.04e+01 c.138.1.1 108670 2esnA 310 3.06e+01 1eumA 165 3.10e+01 1eumA a.25.1.1 59507 1mp8A 281 3.11e+01 d.144.1.7 91384 1q8cA 151 3.12e+01 a.79.1.2 96202 2b1xA 470 3.18e+01 1q7lB 88 3.21e+01 2g0qA 173 3.21e+01 2gsfA 373 3.24e+01 1n8vA 112 3.25e+01 a.118.21.1 85457 1m48A 133 3.28e+01 a.26.1.2 74443 1p4xA 250 3.29e+01 a.4.5.28,a.4.5.28 87784,87785 1t46A 313 3.31e+01 d.144.1.7 106397 1sq5A 308 3.31e+01 c.37.1.6 105882 1y88A 199 3.32e+01 2b7aA 293 3.33e+01 1u4bA 580 3.33e+01 c.55.3.5,e.8.1.1 107664,107665 1g291 372 3.35e+01 1g291 1gcqC 70 3.37e+01 1gcpA b.34.2.1 60436 2cvdA 198 3.49e+01 1whrA 124 3.50e+01 1u7lA 392 3.52e+01 1b79A 119 3.53e+01 1b79A a.81.1.1 18451 1vls 146 3.60e+01 1vls a.24.2.1 16532 1fpoA 171 3.66e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 2a9iA 113 3.67e+01 1wpbA 172 3.69e+01 1x31D 99 3.71e+01 1nh1A 330 3.73e+01 e.45.1.1 91871 1nwaA 203 3.73e+01 d.58.28.1 86295 1es5A 262 3.75e+01 1skf e.3.1.1 42679 1r0pA 312 3.76e+01 d.144.1.7 96734 1wekA 217 3.76e+01 1sszA 34 3.81e+01 j.35.1.1 105999 1b35A 260 3.86e+01 1b35A b.121.4.1 23333 1vekA 84 3.92e+01 1ds1A 324 3.95e+01 1drtA b.82.2.2 28127 1rzhL 281 3.98e+01 f.26.1.1 98164 1n6zA 105 4.02e+01 d.263.1.1 85369 2f94F 350 4.02e+01 1sb0A 87 4.05e+01 a.12.1.1 98789 2bidA 197 4.06e+01 2bidA f.1.4.1 43398 1l3pA 102 4.08e+01 a.24.17.1 84520 1zbfA 142 4.09e+01 1lghA 56 4.10e+01 1lghA f.3.1.1 43733 1txdA 385 4.11e+01 a.87.1.1,b.55.1.1 107422,107423 1gcvB 136 4.15e+01 1cg5B a.1.1.2 15589 2f60K 64 4.15e+01 1ni4A 365 4.16e+01 c.36.1.11 85728 2azeA 155 4.20e+01 2a6cA 83 4.21e+01 1b0xA 94 4.22e+01 1b4fA a.60.1.2 17933 1w9iA 770 4.25e+01 1ejxA 100 4.26e+01 d.8.1.1 83182 1vjvA 415 4.26e+01 d.3.1.9 108632 1b06A 210 4.27e+01 1avmA a.2.11.1,d.44.1.1 15740,38737 1qwgA 251 4.31e+01 c.1.27.1 96473 1tkeA 224 4.34e+01 2fb5A 205 4.36e+01 1qpcA 279 4.37e+01 1fgkA d.144.1.7 41685 2ethA 154 4.39e+01 1g73A 162 4.40e+01 1fewA a.7.4.1 16332 2b1eA 564 4.46e+01 2a14A 263 4.47e+01 2culA 232 4.50e+01 1or0A 160 4.58e+01 d.153.1.2 93445 1l6sA 323 4.60e+01 c.1.10.3 73627 1hdiA 413 4.63e+01 16pk c.86.1.1 60964 1z0wA 207 4.68e+01 1bf5A 545 4.70e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1w2fA 276 4.70e+01 d.143.1.3 109125 1f7uA 607 4.74e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1xfiA 367 4.75e+01 e.50.1.1 109584 1t0qA 498 4.76e+01 a.25.1.2 106220 1e1oA 504 4.77e+01 1lylA b.40.4.1,d.104.1.1 25258,40714 2b4nA 42 4.83e+01 1c7nA 399 4.84e+01 1d2fA c.67.1.3 34413 1vdwA 254 4.84e+01 e.7.1.1 100569 1wmaA 276 4.87e+01 2fiyA 309 4.94e+01 1kcfA 258 5.04e+01 a.140.2.1,c.55.3.7 68434,68435 1wyuA 438 5.05e+01 2bfdA 400 5.07e+01 1pzwA 80 5.08e+01 g.39.1.10 95483 1v2xA 194 5.19e+01 c.116.1.1 100274 1gqeA 365 5.22e+01 e.38.1.1 70351 1r6xA 395 5.26e+01 b.122.1.3,c.26.1.5 97167,97168 1zybA 232 5.27e+01 1pa7A 130 5.28e+01 a.40.1.1 94410 1n1cA 217 5.32e+01 a.184.1.1 85254 1ihoA 283 5.36e+01 1ihoA c.26.1.4 62390 1x8vA 455 5.39e+01 1yvrA 538 5.40e+01 2f4mB 61 5.42e+01 1i5jA 79 5.48e+01 1i5jA j.39.1.1 61788 2gdjA 264 5.57e+01 1yuiA 54 5.57e+01 1yuiA g.37.1.1 45073 2fvhA 120 5.58e+01 1v9mA 323 5.58e+01 f.40.1.1 100543 1llmC 88 5.59e+01 g.37.1.1,g.37.1.1 91059,91060 2g3bA 208 5.64e+01 2ctoA 93 5.70e+01 1cfr 285 5.72e+01 1cfr c.52.1.7 33312 1n3kA 130 5.72e+01 a.77.1.4 79965 2bl0C 142 5.88e+01 2aw42 46 5.90e+01 1u59A 287 5.94e+01 d.144.1.7 107681 1v54E 109 5.95e+01 a.118.11.1 100326 1x4tA 92 6.01e+01 1wv9A 94 6.04e+01 2b4yA 271 6.07e+01 1im8A 244 6.08e+01 c.66.1.14 66212 1w7jB 151 6.09e+01 2d2sA 235 6.13e+01 1nu7D 282 6.22e+01 a.8.6.1,a.8.6.1 92191,92192 1h3fA 432 6.23e+01 c.26.1.1,d.66.1.4 76631,76632 1epuA 591 6.32e+01 1dn1A e.25.1.1 43358 1b8aA 438 6.34e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1bjt 793 6.34e+01 1bjt e.11.1.1 43249 1ycsB 239 6.38e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 1yxcA 292 6.42e+01 1fgkA 310 6.50e+01 1fgkA d.144.1.7 41693 1im5A 180 6.51e+01 c.33.1.3 66211 1ug0A 88 6.53e+01 a.217.1.1 107822 1wa8A 99 6.53e+01 1guxA 218 6.53e+01 1guxA a.74.1.3 18388 1lngA 87 6.55e+01 d.201.1.1 74045 1voqa 90 6.60e+01 1yvhA 329 6.62e+01 1o6dA 163 6.66e+01 c.116.1.3 92567 1z0pA 84 6.67e+01 1o5hA 214 6.68e+01 a.191.1.1 92497 1lddA 74 6.74e+01 a.4.5.34 73841 2dp5A 332 6.76e+01 1exrA 148 6.82e+01 1cll a.39.1.5 17299 1v74A 107 6.88e+01 d.243.1.1 100442 1m22A 503 6.94e+01 c.117.1.1 78464 2dfkA 402 6.97e+01 1v54H 85 7.01e+01 a.51.1.1 100329 2fupA 168 7.05e+01 2gtqA 867 7.07e+01 1knyA 253 7.11e+01 1knyA a.24.16.1,d.218.1.1 75896,75897 1w2wA 211 7.12e+01 c.124.1.5 109130 1qzzA 374 7.15e+01 a.4.5.29,c.66.1.12 96719,96720 1jy2P 48 7.19e+01 h.1.8.1 67442 1kf6D 119 7.25e+01 f.21.2.2 72400 1dmhA 311 7.27e+01 1dmhA b.3.6.1 22633 1tzvA 142 7.37e+01 a.79.1.1 107526 1rx0A 393 7.39e+01 a.29.3.1,e.6.1.1 98007,98008 1floA 422 7.39e+01 1floA a.60.9.1,d.163.1.1 18106,42166 1vpqA 273 7.40e+01 1dbwA 126 7.58e+01 1dbwA c.23.1.1 31095 1l2wI 69 7.60e+01 d.198.1.1 73526 1yviA 149 7.76e+01 1d2zA 108 7.76e+01 1d2zA a.77.1.2 18437 1v38A 78 7.79e+01 a.60.1.2 100280 1bouB 302 7.82e+01 1bouB c.56.6.1 33859 1pbwA 216 7.83e+01 1pbwA a.116.1.1 19103 2axcA 264 7.84e+01 1iieA 75 7.85e+01 1iieA a.109.1.1 19039 1jnrB 150 7.86e+01 d.58.1.5 66969 2db1A 118 7.88e+01 1od6A 160 8.05e+01 c.26.1.3 86836 1r6wA 322 8.06e+01 c.1.11.2,d.54.1.1 97165,97166 1eemA 241 8.07e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1rh9A 373 8.11e+01 1qxoA 388 8.16e+01 d.258.1.1 96539 2gpyA 233 8.23e+01 1b5pA 385 8.23e+01 c.67.1.1 90403 2bv5A 282 8.24e+01 1ulyA 192 8.25e+01 1aj8A 371 8.27e+01 1aj8A a.103.1.1 18900 1hs6A 611 8.28e+01 1hs6A a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 1fx2A 235 8.29e+01 1fx2A d.58.29.1 39430 2gsvA 80 8.29e+01 1zjjA 263 8.33e+01 2f7tA 227 8.34e+01 1ltzA 297 8.35e+01 d.178.1.1 74254 1ajsA 412 8.36e+01 1ajsA c.67.1.1 34276 1k6kA 143 8.39e+01 a.174.1.1 77274 1u6rA 380 8.41e+01 2g09A 297 8.44e+01 1xioA 261 8.45e+01 1zb1A 392 8.46e+01 1g2cB 43 8.55e+01 1g2cB 1jb0I 38 8.59e+01 1jb0I f.23.17.1 62826 1ly1A 181 8.60e+01 c.37.1.1 74334 1t6cA 315 8.61e+01 c.55.1.8,c.55.1.8 106558,106559 1apyB 141 8.62e+01 1apyB 1iicA 422 8.63e+01 1nmtA d.108.1.2,d.108.1.2 62422,62423 1q5nA 454 8.66e+01 a.127.1.1 95901 1yaxA 153 8.70e+01 1mixA 206 8.72e+01 a.11.2.1,b.55.1.5 79166,79167 1eh8A 207 8.73e+01 1sfe a.4.2.1,c.55.7.1 16077,33752 2c31A 568 8.74e+01 2hbtA 247 8.81e+01 1flcB 175 8.83e+01 1flcB h.3.1.1 45716 1mv8A 436 8.83e+01 a.100.1.4,c.2.1.6,c.26.3.1 85128,85129,85130 1ru3A 732 8.88e+01 e.26.1.3 97835 1ze3D 125 8.93e+01 1w5fA 353 8.94e+01 1v2dA 381 8.97e+01 c.67.1.1 108281