# List of top-scoring protein chains for t06-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sz2A 332 2.63e-01 2c4jA 218 1.23e+00 1eemA 241 2.44e+00 1eemA a.45.1.1,c.47.1.5 17717,33011 1zboA 210 2.71e+00 1b4pA 217 2.77e+00 a.45.1.1,c.47.1.5 83158,83159 2fiyA 309 2.80e+00 1zv1A 65 2.81e+00 2ctoA 93 2.99e+00 1jhgA 101 3.58e+00 1jhgA a.4.12.1 19009 2iu5A 195 3.70e+00 1mzbA 136 4.06e+00 a.4.5.42 91497 1qwoA 442 4.31e+00 c.60.1.2 104620 1jpaA 312 4.43e+00 d.144.1.7 67011 1qfxA 460 5.35e+00 1qfxA c.60.1.2 33994 1bd8 156 6.16e+00 1bd8 d.211.1.1 19157 2fu4A 83 6.33e+00 1jb0I 38 6.44e+00 1jb0I f.23.17.1 62826 2aheA 267 7.06e+00 1m2kA 249 7.40e+00 c.31.1.5 84754 1zd3A 555 8.27e+00 1zejA 293 8.65e+00 1ufaA 520 1.03e+01 a.8.3.3,c.6.2.4 99329,99330 1sszA 34 1.14e+01 j.35.1.1 105999 2esnA 310 1.15e+01 2gsvA 80 1.19e+01 1sq5A 308 1.23e+01 c.37.1.6 105882 1x74A 360 1.26e+01 2gdjA 264 1.38e+01 1kpsB 171 1.43e+01 a.118.12.1 68787 1w1oA 534 1.51e+01 d.58.32.4,d.145.1.1 109071,109072 1zkeA 83 1.82e+01 2a9iA 113 1.90e+01 1x6vA 630 1.95e+01 2g6tA 306 2.02e+01 1o5hA 214 2.12e+01 a.191.1.1 92497 1jk8B 190 2.13e+01 1iakB b.1.1.2,d.19.1.1 63147,63148 1z2uA 150 2.22e+01 1z2nX 324 2.25e+01 1ogsA 497 2.28e+01 b.71.1.2,c.1.8.3 86997,86998 2fpmA 322 2.29e+01 1jakA 512 2.33e+01 c.1.8.6,d.92.2.1 66472,66473 1zq9A 285 2.34e+01 1qwyA 291 2.39e+01 b.84.3.2 96509 1i9gA 280 2.43e+01 c.66.1.13 62090 1rh9A 373 2.56e+01 2b7aA 293 2.72e+01 2fqmA 75 2.74e+01 1gwuA 309 2.89e+01 a.93.1.1 83351 1xfsA 178 2.91e+01 d.129.3.5 109589 1wjgA 137 2.92e+01 1v4aA 440 2.98e+01 a.24.16.4,d.218.1.9 108350,108351 1f7uA 607 3.03e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1whrA 124 3.05e+01 1n1jA 93 3.11e+01 a.22.1.3 79813 1k6iA 352 3.14e+01 c.2.1.2 68223 1wovA 250 3.16e+01 1m6kA 251 3.18e+01 e.3.1.1 78695 2ac3A 316 3.21e+01 1xgkA 352 3.25e+01 1yzxA 226 3.42e+01 1w07A 659 3.47e+01 1ytaA 180 3.48e+01 1repC 251 3.49e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1no1A 126 3.53e+01 a.179.1.1 85913 2dgkA 452 3.57e+01 1ohfA 644 3.61e+01 b.121.4.8 93014 1es5A 262 3.62e+01 1skf e.3.1.1 42679 2c7pA 327 3.80e+01 2afwA 329 3.96e+01 1rxqA 178 4.08e+01 a.213.1.1 105118 1jmtB 28 4.22e+01 1xo0A 324 4.24e+01 1gjwA 637 4.27e+01 b.71.1.1,c.1.8.1 60582,60583 1ewfA 456 4.41e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 2fmcA 82 4.44e+01 2afdA 88 4.44e+01 1i7dA 659 4.47e+01 1d6mA e.10.1.1 61886 2bneA 241 4.48e+01 1amuA 563 4.52e+01 1amuA e.23.1.1 43351 1d8wA 426 4.56e+01 1de5A c.1.15.2 29394 1c52 131 4.68e+01 1c52 a.3.1.1 15810 1iqrA 420 4.69e+01 a.99.1.1,c.28.1.1 66275,66276 1x91A 153 4.73e+01 1ut7A 171 4.73e+01 b.143.1.1 99906 1tzvA 142 4.79e+01 a.79.1.1 107526 1e6iA 121 4.82e+01 1b91A a.29.2.1 16969 1t92A 116 4.84e+01 1p4cA 380 4.95e+01 c.1.4.1 94100 1xrsA 516 5.06e+01 1qd9A 124 5.07e+01 1qu9A d.79.1.1 39758 2givA 295 5.15e+01 1gweA 503 5.51e+01 e.5.1.1 70667 1pa1A 310 5.51e+01 c.45.1.2 94404 1thg 544 5.53e+01 1thg c.69.1.17 34763 1ab8A 220 5.59e+01 1azsA d.58.29.1 39414 1ssqA 267 5.60e+01 b.81.1.6 105993 1yy7A 213 5.61e+01 1d6gA 47 5.63e+01 1d6gA g.33.1.1 44976 1ux5A 411 5.69e+01 a.207.1.1 100144 2fkzA 155 5.69e+01 1iqcA 308 5.73e+01 a.3.1.5,a.3.1.5 66266,66267 1ycsB 239 5.77e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 1r8iA 213 5.85e+01 a.8.7.1 97239 1b8aA 438 5.94e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 2a6hC 1119 5.95e+01 1gcqC 70 6.04e+01 1gcpA b.34.2.1 60436 1v96A 149 6.37e+01 1tn6B 437 6.38e+01 1pmmA 466 6.44e+01 c.67.1.6 94901 1yozA 116 6.45e+01 1j8mF 297 6.56e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 2b9sB 62 6.60e+01 1cfr 285 6.77e+01 1cfr c.52.1.7 33312 1r6wA 322 6.91e+01 c.1.11.2,d.54.1.1 97165,97166 1vls 146 6.92e+01 1vls a.24.2.1 16532 1mp8A 281 7.03e+01 d.144.1.7 91384 1n1fA 159 7.06e+01 a.26.1.3 79803 1xqsA 280 7.07e+01 1p8xA 344 7.09e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 1jeyA 609 7.12e+01 1jeqA b.131.1.1,c.62.1.3 90370,90371 2d3dA 88 7.18e+01 1zbfA 142 7.22e+01 2bolA 314 7.25e+01 1cfzA 162 7.26e+01 1cfzA c.56.1.1 33754 1jatA 155 7.26e+01 1u9aA d.20.1.1 62818 1m98A 317 7.31e+01 a.175.1.1,d.17.4.6 78866,78867 1xioA 261 7.41e+01 1oeyJ 107 7.49e+01 d.15.2.2 92804 1ji7A 89 7.49e+01 a.60.1.1 71682 1qo7A 394 7.52e+01 1qo7A c.69.1.11 34697 1pn0A 665 7.54e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1zxkA 98 7.56e+01 1im8A 244 7.59e+01 c.66.1.14 66212 1s5lX 50 7.62e+01 1u5dA 108 7.66e+01 2sqcA 631 7.76e+01 2sqcA a.102.4.2,a.102.4.2 18854,18855 2fh1A 344 7.81e+01 1w7lA 422 7.88e+01 c.67.1.1 109226 2afaA 425 7.97e+01 1dciA 275 8.03e+01 1dciA c.14.1.3 30918 1xqrA 296 8.20e+01 2gw6A 123 8.24e+01 1i1qB 192 8.25e+01 1qdlB c.23.16.1 61544 1wteA 272 8.28e+01 1z0wA 207 8.54e+01 1ez0A 510 8.55e+01 1eyyA c.82.1.1 35385 1u6eA 335 8.60e+01 2etxA 209 8.64e+01 2cqsA 842 8.67e+01 1tu7A 208 8.72e+01 1jhdA 396 8.74e+01 b.122.1.3,c.26.1.5 66712,66713 1hdiA 413 8.80e+01 16pk c.86.1.1 60964 1wqwA 235 8.81e+01 1v54H 85 8.84e+01 a.51.1.1 100329 1sheA 103 8.93e+01 d.274.1.1 105551 1n8vA 112 8.94e+01 a.118.21.1 85457 1hs6A 611 8.99e+01 1hs6A a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235