# List of top-scoring protein chains for t06-100-30-str2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sz2A 332 2.59e-01 2c4jA 218 7.59e-01 1qwoA 442 9.64e-01 c.60.1.2 104620 2fiyA 309 1.01e+00 1b4pA 217 1.22e+00 a.45.1.1,c.47.1.5 83158,83159 1jpaA 312 1.33e+00 d.144.1.7 67011 1eemA 241 1.92e+00 1eemA a.45.1.1,c.47.1.5 17717,33011 2iu5A 195 1.95e+00 1mzbA 136 2.00e+00 a.4.5.42 91497 1jhgA 101 2.02e+00 1jhgA a.4.12.1 19009 2fu4A 83 2.03e+00 1zd3A 555 2.18e+00 1zejA 293 2.39e+00 1bd8 156 2.60e+00 1bd8 d.211.1.1 19157 1qfxA 460 2.62e+00 1qfxA c.60.1.2 33994 1zv1A 65 2.89e+00 1zboA 210 4.21e+00 1k6iA 352 4.84e+00 c.2.1.2 68223 2gsvA 80 6.07e+00 2aheA 267 7.87e+00 1kpsB 171 8.35e+00 a.118.12.1 68787 1es5A 262 9.39e+00 1skf e.3.1.1 42679 1jk8B 190 9.46e+00 1iakB b.1.1.2,d.19.1.1 63147,63148 1hs6A 611 9.61e+00 1hs6A a.118.1.7,b.98.1.1,d.92.1.13 61233,61234,61235 1sqgA 429 9.87e+00 a.79.1.3,c.66.1.38 105912,105913 1ohfA 644 1.03e+01 b.121.4.8 93014 1im5A 180 1.06e+01 c.33.1.3 66211 1ewfA 456 1.12e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 1w1oA 534 1.12e+01 d.58.32.4,d.145.1.1 109071,109072 2g62A 325 1.16e+01 1zq9A 285 1.23e+01 1o5hA 214 1.26e+01 a.191.1.1 92497 2a9iA 113 1.26e+01 1jakA 512 1.27e+01 c.1.8.6,d.92.2.1 66472,66473 1kblA 873 1.37e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1xgkA 352 1.41e+01 1okcA 297 1.50e+01 f.42.1.1 93248 1p4cA 380 1.51e+01 c.1.4.1 94100 1gjwA 637 1.61e+01 b.71.1.1,c.1.8.1 60582,60583 2furA 209 1.62e+01 1jb0I 38 1.66e+01 1jb0I f.23.17.1 62826 1n8vA 112 1.67e+01 a.118.21.1 85457 1t92A 116 1.73e+01 1sszA 34 1.74e+01 j.35.1.1 105999 1x6vA 630 1.79e+01 1xo0A 324 1.83e+01 2b7aA 293 1.88e+01 1mun 225 1.89e+01 1mun a.96.1.2 18744 1rh9A 373 1.98e+01 1v4aA 440 2.00e+01 a.24.16.4,d.218.1.9 108350,108351 1vls 146 2.02e+01 1vls a.24.2.1 16532 1tzvA 142 2.02e+01 a.79.1.1 107526 1no1A 126 2.02e+01 a.179.1.1 85913 1im8A 244 2.11e+01 c.66.1.14 66212 1ytaA 180 2.14e+01 1iqrA 420 2.19e+01 a.99.1.1,c.28.1.1 66275,66276 1z2nX 324 2.25e+01 1yozA 116 2.30e+01 1xrsA 516 2.32e+01 1dbwA 126 2.34e+01 1dbwA c.23.1.1 31095 1ufaA 520 2.35e+01 a.8.3.3,c.6.2.4 99329,99330 1gwuA 309 2.38e+01 a.93.1.1 83351 1w07A 659 2.43e+01 2esnA 310 2.47e+01 1nw3A 416 2.51e+01 c.66.1.31 86288 2g6tA 306 2.55e+01 1tkeA 224 2.55e+01 2ccmA 191 2.55e+01 1mp8A 281 2.72e+01 d.144.1.7 91384 1m6kA 251 2.73e+01 e.3.1.1 78695 2afaA 425 2.75e+01 1ds1A 324 2.76e+01 1drtA b.82.2.2 28127 1fg7A 356 2.78e+01 1gewA c.67.1.1 59819 1rzhL 281 2.78e+01 f.26.1.1 98164 1rkd 309 2.79e+01 1rkd c.72.1.1 34928 1or7A 194 2.82e+01 a.4.13.2,a.177.1.1 87332,87333 1m2kA 249 2.83e+01 c.31.1.5 84754 1ycsB 239 2.84e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 1whrA 124 2.84e+01 2fkzA 155 2.86e+01 2afwA 329 2.87e+01 2fqmA 75 2.99e+01 1iqcA 308 3.00e+01 a.3.1.5,a.3.1.5 66266,66267 1hdiA 413 3.01e+01 16pk c.86.1.1 60964 1thg 544 3.02e+01 1thg c.69.1.17 34763 1m98A 317 3.13e+01 a.175.1.1,d.17.4.6 78866,78867 1t1uA 639 3.17e+01 1t7rA 269 3.18e+01 a.123.1.1 106635 2afdA 88 3.21e+01 1pw4A 451 3.22e+01 f.38.1.1 95198 1vlbA 907 3.26e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1ufzA 83 3.30e+01 a.5.9.1 107821 1aj8A 371 3.33e+01 1aj8A a.103.1.1 18900 2c78A 405 3.41e+01 1d6gA 47 3.42e+01 1d6gA g.33.1.1 44976 2gdjA 264 3.45e+01 1h2sA 225 3.48e+01 f.13.1.1 76578 1paqA 189 3.50e+01 a.118.1.14 94413 1yarA 233 3.51e+01 1q3eA 207 3.52e+01 b.82.3.2 95669 2gw6A 123 3.61e+01 1n1jA 93 3.62e+01 a.22.1.3 79813 1tueA 212 3.63e+01 c.37.1.20 107323 1li5A 461 3.65e+01 a.27.1.1,c.26.1.1 73912,73913 1gcqC 70 3.66e+01 1gcpA b.34.2.1 60436 1ji7A 89 3.68e+01 a.60.1.1 71682 1z2uA 150 3.75e+01 1n1fA 159 3.78e+01 a.26.1.3 79803 1r6wA 322 3.83e+01 c.1.11.2,d.54.1.1 97165,97166 1x54A 434 3.86e+01 1k2xA 177 3.91e+01 d.153.1.5 90929 1jae 471 3.94e+01 1smd b.71.1.1,c.1.8.1 27773,28760 1qo7A 394 3.98e+01 1qo7A c.69.1.11 34697 1lvaA 258 4.01e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1jhdA 396 4.03e+01 b.122.1.3,c.26.1.5 66712,66713 1zbfA 142 4.06e+01 1pn0A 665 4.16e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1tu7A 208 4.22e+01 2c5rA 67 4.24e+01 1zkeA 83 4.24e+01 1f7uA 607 4.25e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1jmtB 28 4.44e+01 1z98A 281 4.49e+01 1repC 251 4.54e+01 1repC a.4.5.10,a.4.5.10 16125,16126 2bbrA 195 4.61e+01 1pa7A 130 4.62e+01 a.40.1.1 94410 1s6lA 212 4.65e+01 2cqsA 842 4.65e+01 1kf6D 119 4.66e+01 f.21.2.2 72400 1m65A 245 4.67e+01 c.6.3.1 84847 2cchB 260 4.68e+01 1b8aA 438 4.75e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1vi0A 206 4.84e+01 a.4.1.9,a.121.1.1 100720,100721 2g7gA 213 4.88e+01 1qd9A 124 5.01e+01 1qu9A d.79.1.1 39758 1j8mF 297 5.14e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1xl7A 612 5.15e+01 1yy7A 213 5.18e+01 1hf8A 289 5.21e+01 1hg5A a.7.8.2,a.118.9.3 90354,90355 1v9mA 323 5.23e+01 f.40.1.1 100543 2gsfA 373 5.28e+01 2ctoA 93 5.33e+01 1fzqA 181 5.38e+01 1hurA c.37.1.8 32060 1tqyB 415 5.40e+01 c.95.1.1,c.95.1.1 107247,107248 2fgtA 417 5.50e+01 1sr2A 116 5.55e+01 1gweA 503 5.63e+01 e.5.1.1 70667 1llmC 88 5.63e+01 g.37.1.1,g.37.1.1 91059,91060 2f7tA 227 5.68e+01 1rypB 250 5.72e+01 1rypB d.153.1.4 41933 1vpqA 273 5.72e+01 2fpmA 322 5.73e+01 1x6oA 174 5.75e+01 b.34.5.2,b.40.4.5 109493,109494 1lghA 56 5.79e+01 1lghA f.3.1.1 43733 1qwyA 291 5.88e+01 b.84.3.2 96509 1rypH 205 5.89e+01 d.153.1.4 41876 2cygA 312 5.90e+01 1sheA 103 5.90e+01 d.274.1.1 105551 1tn6B 437 6.05e+01 2f2gA 221 6.06e+01 1geeA 261 6.09e+01 c.2.1.2 90509 2b1eA 564 6.09e+01 1rxqA 178 6.10e+01 a.213.1.1 105118 2fikA 287 6.17e+01 2csgA 424 6.18e+01 2gwdA 449 6.20e+01 1b06A 210 6.22e+01 1avmA a.2.11.1,d.44.1.1 15740,38737 1ykhA 108 6.23e+01 1x31D 99 6.26e+01 1yfsA 465 6.28e+01 1sra 151 6.31e+01 1sra a.39.1.3 17190 1ru3A 732 6.50e+01 e.26.1.3 97835 2aawA 222 6.53e+01 1vrtA 560 6.68e+01 1rthA c.55.3.1,e.8.1.2 33574,43023 2fupA 168 6.68e+01 1sq5A 308 6.70e+01 c.37.1.6 105882 1uw4B 248 6.72e+01 a.118.1.14 100072 1alvA 173 6.82e+01 1alvA a.39.1.8 17370 1gdeA 389 6.82e+01 c.67.1.1 60456 1yw0A 276 6.83e+01 1xmeA 568 7.05e+01 1ux5A 411 7.11e+01 a.207.1.1 100144 1i9gA 280 7.18e+01 c.66.1.13 62090 2c2nA 339 7.18e+01 1x91A 153 7.20e+01 1n45A 233 7.20e+01 a.132.1.1 79981 1wqwA 235 7.21e+01 2givA 295 7.24e+01 2bneA 241 7.31e+01 2b4nA 42 7.34e+01 1t8kA 77 7.35e+01 a.28.1.1 106666 1ccwB 483 7.45e+01 1cb7B c.1.19.2 29646 1hh8A 213 7.59e+01 1e96B a.118.8.1 61042 1px5A 349 7.70e+01 a.160.1.2,d.218.1.6 95277,95278 1b0xA 94 7.71e+01 1b4fA a.60.1.2 17933 1u60A 310 7.71e+01 e.3.1.2 107692 1v2dA 381 7.71e+01 c.67.1.1 108281 1r0pA 312 7.73e+01 d.144.1.7 96734 1ogsA 497 7.77e+01 b.71.1.2,c.1.8.3 86997,86998 1b35A 260 7.81e+01 1b35A b.121.4.1 23333 1kq3A 376 7.86e+01 e.22.1.2 68790 1cojA 212 8.07e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1q6hA 224 8.07e+01 d.26.1.1 95975 2a2rA 210 8.07e+01 1wjgA 137 8.09e+01 1jvr 137 8.13e+01 1jvr a.61.1.2 18132 1xioA 261 8.13e+01 1q6uA 245 8.16e+01 d.26.1.1 95998 1c52 131 8.20e+01 1c52 a.3.1.1 15810 1umgA 362 8.20e+01 d.280.1.1 107956 1pa2A 306 8.22e+01 1bgp a.93.1.1 18693 2cz2A 223 8.24e+01 1x74A 360 8.25e+01 1m2oA 768 8.30e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1nu7D 282 8.34e+01 a.8.6.1,a.8.6.1 92191,92192 1ssqA 267 8.34e+01 b.81.1.6 105993 1opjA 293 8.39e+01 d.144.1.7 87230 1jeyA 609 8.45e+01 1jeqA b.131.1.1,c.62.1.3 90370,90371 1fpoA 171 8.47e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 2dbnA 461 8.54e+01 2db9A 149 8.55e+01 1m93B 245 8.55e+01 1hrkA 359 8.60e+01 1hrkA c.92.1.1 61228 1t6cA 315 8.61e+01 c.55.1.8,c.55.1.8 106558,106559 1r6fA 310 8.62e+01 e.46.1.1 97149 1vqoN 187 8.69e+01 1svvA 359 8.84e+01 c.67.1.1 106054 1h16A 759 8.91e+01 c.7.1.1 76462