# List of top-scoring protein chains for t06-100-30-o_sep-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1bd8 156 3.60e-02 1bd8 d.211.1.1 19157 1zd3A 555 1.19e-01 1jpaA 312 1.20e-01 d.144.1.7 67011 1sz2A 332 1.25e-01 1mzbA 136 1.44e-01 a.4.5.42 91497 2b7aA 293 1.45e-01 2fu4A 83 2.03e-01 1jhgA 101 2.29e-01 1jhgA a.4.12.1 19009 1ufaA 520 2.60e-01 a.8.3.3,c.6.2.4 99329,99330 1zbfA 142 3.12e-01 2ccmA 191 4.38e-01 1tn6A 382 8.35e-01 2furA 209 1.10e+00 2afwA 329 1.24e+00 2fiyA 309 1.31e+00 2fqmA 75 1.36e+00 2gsvA 80 1.40e+00 1whrA 124 1.50e+00 1yozA 116 1.51e+00 1x6vA 630 1.61e+00 1fgkA 310 1.66e+00 1fgkA d.144.1.7 41693 1mp8A 281 1.68e+00 d.144.1.7 91384 1qwoA 442 1.82e+00 c.60.1.2 104620 2aheA 267 1.94e+00 1zv1A 65 2.22e+00 1z2uA 150 2.31e+00 1d8wA 426 2.57e+00 1de5A c.1.15.2 29394 1yzxA 226 2.59e+00 1rkd 309 2.70e+00 1rkd c.72.1.1 34928 1m6jA 261 2.75e+00 c.1.1.1 78693 1kblA 873 2.77e+00 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1sedA 117 2.83e+00 a.219.1.1 105449 1guxA 218 2.83e+00 1guxA a.74.1.3 18388 2esnA 310 2.84e+00 1qd9A 124 2.91e+00 1qu9A d.79.1.1 39758 1qfxA 460 2.96e+00 1qfxA c.60.1.2 33994 1fehA 574 3.06e+00 1fehA c.96.1.1,d.15.4.2,d.58.1.5 36015,37690,38998 1tqyB 415 3.10e+00 c.95.1.1,c.95.1.1 107247,107248 2gsfA 373 3.16e+00 1zboA 210 3.26e+00 1zq9A 285 3.31e+00 1ewfA 456 3.59e+00 1bp1 d.83.1.1,d.83.1.1 40024,40025 1es5A 262 3.68e+00 1skf e.3.1.1 42679 2g3kA 94 3.69e+00 1dbwA 126 3.98e+00 1dbwA c.23.1.1 31095 1j8mF 297 4.08e+00 1ng1 a.24.13.1,c.37.1.10 62742,62743 1x54A 434 4.14e+00 3sdhA 146 4.32e+00 3sdhA a.1.1.2 14984 1tueA 212 4.44e+00 c.37.1.20 107323 1i9gA 280 4.46e+00 c.66.1.13 62090 1hfeL 421 4.49e+00 1fehA c.96.1.1,d.58.1.5 36018,39001 1ssqA 267 4.61e+00 b.81.1.6 105993 1t7rA 269 4.62e+00 a.123.1.1 106635 2fmcA 82 4.89e+00 2g38B 198 4.99e+00 1z2nX 324 5.03e+00 1im5A 180 5.10e+00 c.33.1.3 66211 1bh9B 89 5.11e+00 1bh9B a.22.1.3 16485 2d0tA 406 5.20e+00 1z3eB 73 5.38e+00 2iu5A 195 5.53e+00 1t6uA 117 5.59e+00 a.24.22.1 106584 2hbtA 247 5.89e+00 1h4vB 421 5.98e+00 1adjA c.51.1.1,d.104.1.1 60624,60625 1nw3A 416 6.02e+00 c.66.1.31 86288 1v73A 342 6.40e+00 1gwuA 309 6.66e+00 a.93.1.1 83351 1j1vA 94 6.69e+00 a.4.12.2 83981 1t92A 116 6.79e+00 1m48A 133 7.05e+00 a.26.1.2 74443 2f96A 224 7.09e+00 2gw6A 123 7.15e+00 1z6uA 150 7.60e+00 1hq1A 105 7.62e+00 1dulA a.36.1.1 17120 1r89A 437 7.77e+00 a.160.1.3,d.218.1.7,d.58.16.2 97221,97222,97223 1qu9A 128 7.85e+00 1qu9A d.79.1.1 39755 2f8mA 244 7.92e+00 1ihbA 162 8.06e+00 1bd8 d.211.1.1 19161 1amf 233 8.19e+00 1wod c.94.1.1 35833 1wdcC 156 8.21e+00 1wdcC a.39.1.5 17317 1v54H 85 8.27e+00 a.51.1.1 100329 1im8A 244 8.33e+00 c.66.1.14 66212 1xfsA 178 8.46e+00 d.129.3.5 109589 2g19A 244 8.64e+00 1sheA 103 9.01e+00 d.274.1.1 105551 1gdeA 389 9.03e+00 c.67.1.1 60456 1wmaA 276 9.21e+00 1tkeA 224 9.22e+00 1tzvA 142 9.32e+00 a.79.1.1 107526 2a7mA 250 9.36e+00 1kpsB 171 9.39e+00 a.118.12.1 68787 1y0uA 96 9.54e+00 1m2kA 249 9.56e+00 c.31.1.5 84754 2fqxA 318 9.71e+00 1mun 225 9.82e+00 1mun a.96.1.2 18744 1jmtB 28 9.89e+00 1x7yA 400 1.00e+01 1hdiA 413 1.00e+01 16pk c.86.1.1 60964 1u5dA 108 1.01e+01 1v4aA 440 1.02e+01 a.24.16.4,d.218.1.9 108350,108351 1paqA 189 1.02e+01 a.118.1.14 94413 1u9iA 519 1.03e+01 2f02A 323 1.04e+01 1jmxA 494 1.05e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1x74A 360 1.06e+01 1vhrA 184 1.07e+01 1vhrA c.45.1.1 32651 1d6gA 47 1.07e+01 1d6gA g.33.1.1 44976 2cvlA 124 1.09e+01 1vgmA 378 1.09e+01 1p4cA 380 1.15e+01 c.1.4.1 94100 1kopA 223 1.15e+01 2cba b.74.1.1 27966 1sszA 34 1.17e+01 j.35.1.1 105999 2b1xA 470 1.21e+01 1v2zA 111 1.22e+01 a.186.1.1 108300 1gteA 1025 1.24e+01 a.1.2.2,c.1.4.1,c.3.1.1,c.4.1.1,d.58.1.5 70440,70441,70442,70443,70444 2end 138 1.26e+01 2end a.18.1.1 16400 2bemA 170 1.27e+01 1n0qA 93 1.27e+01 k.37.1.1 79754 1x1nA 524 1.27e+01 2bs3A 656 1.28e+01 1xqaA 113 1.28e+01 1ttzA 87 1.28e+01 c.47.1.1 107309 1or0A 160 1.28e+01 d.153.1.2 93445 1ut7A 171 1.29e+01 b.143.1.1 99906 1vjeA 166 1.30e+01 d.185.1.2 100807 1dciA 275 1.34e+01 1dciA c.14.1.3 30918 1q5zA 177 1.34e+01 a.196.1.1 95954 2g62A 325 1.35e+01 1ycsB 239 1.36e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 2b0jA 358 1.36e+01 1regX 122 1.36e+01 1regX d.58.27.1 39406 1ufiA 64 1.38e+01 a.30.4.1 99336 2c4jA 218 1.39e+01 1eu8A 409 1.40e+01 1eu8A c.94.1.1 59502 1w1oA 534 1.41e+01 d.58.32.4,d.145.1.1 109071,109072 1m93B 245 1.44e+01 1t4bA 367 1.45e+01 c.2.1.3,d.81.1.1 106406,106407 1jb0I 38 1.45e+01 1jb0I f.23.17.1 62826 1qtnB 95 1.46e+01 1pauB 2fx0A 201 1.49e+01 1ngkA 128 1.50e+01 a.1.1.1 85673 1jae 471 1.52e+01 1smd b.71.1.1,c.1.8.1 27773,28760 1q0gA 117 1.53e+01 a.24.22.1 104428 2c78A 405 1.55e+01 1y2qA 143 1.56e+01 1a76 326 1.59e+01 1a76 a.60.7.1,c.120.1.2 18091,33361 1vquA 374 1.60e+01 1n3kA 130 1.61e+01 a.77.1.4 79965 1qahA 136 1.61e+01 d.79.1.1 96338 2gboA 104 1.62e+01 1euvA 221 1.66e+01 1euvA d.3.1.7 37133 2fgtA 417 1.66e+01 1jk8B 190 1.68e+01 1iakB b.1.1.2,d.19.1.1 63147,63148 2a10A 125 1.69e+01 1fc3A 120 1.71e+01 1fc3A a.4.6.3 16237 1m6kA 251 1.72e+01 e.3.1.1 78695 1jakA 512 1.73e+01 c.1.8.6,d.92.2.1 66472,66473 1vlbA 907 1.73e+01 a.56.1.1,d.15.4.2,d.41.1.1,d.133.1.1 108739,108740,108741,108742 1z5zA 271 1.73e+01 1m2oA 768 1.76e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1voqa 90 1.76e+01 1x6iA 91 1.77e+01 1opjA 293 1.79e+01 d.144.1.7 87230 1jfxA 217 1.79e+01 c.1.8.8 62943 1zkeA 83 1.86e+01 1iomA 377 1.88e+01 a.103.1.1 83698 1h99A 224 1.89e+01 a.142.1.1,a.142.1.1 60814,60815 2a61A 145 1.90e+01 1l0lK 56 1.90e+01 f.23.15.1 84497 1lr0A 129 1.91e+01 d.212.1.1 74213 1mp9A 198 1.92e+01 d.129.1.1,d.129.1.1 91385,91386 1ujkA 147 1.94e+01 a.118.9.2 99457 1d4xG 126 1.94e+01 1d0nA d.109.1.1 59109 1j6rA 214 1.96e+01 d.173.1.2 71598 1i1qA 520 1.96e+01 1qdlA d.161.1.1 61543 1apyA 162 1.98e+01 1apyA d.153.1.5 42004 1z98A 281 1.99e+01 2f2gA 221 1.99e+01 1ji7A 89 1.99e+01 a.60.1.1 71682 1ccwB 483 2.05e+01 1cb7B c.1.19.2 29646 2fpmA 322 2.05e+01 1thg 544 2.06e+01 1thg c.69.1.17 34763 1l8dA 112 2.09e+01 h.4.12.1 73687 1bjt 793 2.09e+01 1bjt e.11.1.1 43249 1bku 33 2.12e+01 1bku j.6.1.1 46104 1zzpA 130 2.13e+01 1o63A 219 2.17e+01 c.94.1.1 92540 1eyhA 144 2.18e+01 1eduA a.118.9.1 19214 1c7nA 399 2.18e+01 1d2fA c.67.1.3 34413 2gtqA 867 2.19e+01 1qv1A 195 2.26e+01 a.39.1.5 96347 1lngA 87 2.29e+01 d.201.1.1 74045 1gqeA 365 2.31e+01 e.38.1.1 70351 1x8vA 455 2.32e+01 1xo0A 324 2.33e+01 1wdeA 294 2.34e+01 1ia6A 441 2.34e+01 a.102.1.2 76738 2b1eA 564 2.37e+01 2c0nA 203 2.38e+01 1g5hA 454 2.38e+01 1g5hA c.51.1.1,d.104.1.1 60270,60271 1w2fA 276 2.41e+01 d.143.1.3 109125 1ugpA 203 2.42e+01 d.149.1.1 107831 1gegA 256 2.43e+01 1ybvA c.2.1.2 29888 1hd6A 37 2.45e+01 1ery a.10.1.1 16365 1zp4A 304 2.45e+01 1snnA 227 2.48e+01 d.115.1.2 105821 2fhzA 109 2.48e+01 1vbiA 344 2.49e+01 1v96A 149 2.52e+01 1c3cA 429 2.53e+01 1c3cA a.127.1.1 19425 1amuA 563 2.54e+01 1amuA e.23.1.1 43351 1ka9H 200 2.54e+01 c.23.16.1 77308 1wzdA 215 2.55e+01 1zejA 293 2.56e+01 1y9wA 140 2.57e+01 1t44G 147 2.59e+01 d.109.1.1 106395 1sr2A 116 2.60e+01 1ohfA 644 2.63e+01 b.121.4.8 93014 1cqxA 403 2.65e+01 1cqxA a.1.1.2,b.43.4.2,c.25.1.5 15635,25667,31562 2fikA 287 2.65e+01 1z0jA 170 2.67e+01 1h3nA 878 2.67e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 2bv5A 282 2.70e+01 1pyoB 105 2.74e+01 1jd1A 129 2.78e+01 1qu9A d.79.1.1 62890 1t46A 313 2.78e+01 d.144.1.7 106397 2auwA 170 2.81e+01 1yz7A 188 2.85e+01 1px5A 349 2.85e+01 a.160.1.2,d.218.1.6 95277,95278 2ap1A 327 2.86e+01 1s0pA 176 2.87e+01 a.192.1.1 98300 1dp4A 435 2.88e+01 1dp4A c.93.1.1 35710 1w99A 558 2.91e+01 1x91A 153 2.91e+01 2a5yB 549 2.97e+01 1ztsA 139 2.98e+01 1e6iA 121 3.10e+01 1b91A a.29.2.1 16969 1x6oA 174 3.10e+01 b.34.5.2,b.40.4.5 109493,109494 1h6kA 757 3.13e+01 a.118.1.14,a.118.1.14,a.118.1.14 60675,60676,60677 1yymG 313 3.14e+01 1p7tA 731 3.15e+01 c.1.13.1 94319 1t1uA 639 3.15e+01 1p2xA 159 3.16e+01 a.40.1.1 104062 1nh2D 121 3.17e+01 a.32.1.1,b.56.1.1 91876,91877 1h8eD 482 3.20e+01 1skyE a.69.1.1,b.49.1.1,c.37.1.11 60747,60748,60749 1wddS 128 3.22e+01 1yw0A 276 3.28e+01 1ab8A 220 3.30e+01 1azsA d.58.29.1 39414 2ar0A 541 3.33e+01 1oqcA 125 3.35e+01 a.24.15.1 87264 1a3c 181 3.39e+01 1a3c c.61.1.1 34095 1mqeA 207 3.41e+01 d.113.1.1 91394 1zsyA 357 3.44e+01 1mr7A 209 3.47e+01 b.81.1.3 91430 1k6iA 352 3.49e+01 c.2.1.2 68223 2fh1A 344 3.51e+01 1iw0A 215 3.52e+01 a.132.1.1 83720 1b0xA 94 3.52e+01 1b4fA a.60.1.2 17933 1mml 265 3.53e+01 1mml e.8.1.2 43015 1tuaA 191 3.55e+01 d.51.1.1,d.51.1.1 107321,107322 1p8xA 344 3.57e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 1sq5A 308 3.60e+01 c.37.1.6 105882 2b9wA 424 3.61e+01 1kllA 130 3.63e+01 d.32.1.2 72720 1aquA 297 3.64e+01 1aquA c.37.1.5 31942 1zc6A 305 3.64e+01 1t8kA 77 3.64e+01 a.28.1.1 106666 1cfr 285 3.68e+01 1cfr c.52.1.7 33312 1jhdA 396 3.72e+01 b.122.1.3,c.26.1.5 66712,66713 2avuE 192 3.72e+01 1zdzA 302 3.73e+01 1jeyA 609 3.73e+01 1jeqA b.131.1.1,c.62.1.3 90370,90371 1on2A 142 3.76e+01 a.4.5.24,a.76.1.1 87103,87104 2gpyA 233 3.76e+01 1g3qA 237 3.82e+01 1hyqA c.37.1.10 60237 1dbhA 354 3.84e+01 1awe a.87.1.1,b.55.1.1 18514,26967 1j2rA 199 3.89e+01 c.33.1.3 90788 2afaA 425 3.89e+01 1ewsA 32 3.89e+01 1ewsA g.9.1.1 59534 1wmmA 145 3.90e+01 1y97A 238 3.92e+01 1sf8A 126 3.94e+01 d.271.1.1 105472 1ej6D 418 3.94e+01 i.7.1.1 45970 1rm8A 169 3.96e+01 d.92.1.11 97660 1b06A 210 3.98e+01 1avmA a.2.11.1,d.44.1.1 15740,38737 1ps1A 337 4.02e+01 1ps1A a.128.1.4 19450 1vf6A 83 4.04e+01 a.194.1.1 100600 2f6mB 109 4.07e+01 2bi7A 384 4.08e+01 1kq6A 141 4.09e+01 d.189.1.1 91020 1yewB 247 4.10e+01 1xl7A 612 4.11e+01 1q9uA 130 4.12e+01 d.129.7.1 96314 1nlfA 279 4.17e+01 c.37.1.11 85850 2ezh 75 4.19e+01 2ezh a.4.1.2 16029 1tqxA 227 4.22e+01 1xkyA 301 4.28e+01 1auk 489 4.30e+01 1auk c.76.1.2 35030 1k1aA 241 4.30e+01 d.211.1.1 67992 1p2fA 220 4.30e+01 a.4.6.1,c.23.1.1 87720,87721 1it2A 146 4.34e+01 a.1.1.2 66365 1y4tA 322 4.35e+01 1x3sA 195 4.35e+01 1n2zA 245 4.37e+01 c.92.2.2 79865 1o17A 345 4.42e+01 a.46.2.1,c.27.1.1 80765,80766 1vljA 407 4.43e+01 e.22.1.2 108832 1u6rA 380 4.44e+01 2a9iA 113 4.46e+01 1mzgA 146 4.46e+01 d.224.1.1 79696 2aexA 346 4.50e+01 1t3uA 104 4.52e+01 d.244.1.1 99120 1mgtA 174 4.52e+01 1mgtA a.4.2.1,c.55.7.1 16078,33753 1m3uA 264 4.53e+01 c.1.12.8 84784 2c5rA 67 4.54e+01 1w2yA 229 4.54e+01 a.204.1.1 109140 2gptA 523 4.56e+01 2bpqA 373 4.57e+01 1vrtA 560 4.58e+01 1rthA c.55.3.1,e.8.1.2 33574,43023 1uxtA 501 4.60e+01 c.82.1.1 108125 1e2kA 331 4.60e+01 1qhiA c.37.1.1 31854 1d5rA 324 4.62e+01 1d5rA b.7.1.1,c.45.1.1 23181,32697 1f5qB 252 4.64e+01 1f5qB a.74.1.1,a.74.1.1 18362,18363 1avoA 60 4.64e+01 1avoA a.24.8.1 16619 1t0tV 248 4.64e+01 d.58.4.10 106229 1mj5A 302 4.65e+01 c.69.1.8 91285 1eemA 241 4.65e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1b8aA 438 4.74e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1lvaA 258 4.81e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1ev7A 317 4.83e+01 1ev7B c.52.1.9 33315 1xkmB 25 4.86e+01 1pzqA 60 4.87e+01 a.34.3.1 95466 1o5hA 214 4.87e+01 a.191.1.1 92497 2bj7A 138 4.87e+01 2cqsA 842 4.89e+01 2cj4A 150 4.91e+01 1ni4A 365 4.91e+01 c.36.1.11 85728 1w4vA 119 4.91e+01 1xtyA 120 4.92e+01 1ln4A 104 4.99e+01 d.68.4.1 74043 1vq3A 94 4.99e+01 1qs1A 462 5.00e+01 1qs1A d.166.1.1,d.166.1.1 42260,42261 1ub9A 100 5.01e+01 a.4.5.28 99159 1qp6A 35 5.05e+01 1qp6A k.16.1.1 46443 1po5A 476 5.06e+01 a.104.1.1 94963 1e6wA 260 5.08e+01 1e6wA c.2.1.2 59326 1fk5A 93 5.09e+01 1rzl a.52.1.1 59866 1q77A 138 5.10e+01 c.26.2.4 96023 1qpcA 279 5.11e+01 1fgkA d.144.1.7 41685 2a23A 82 5.11e+01 1qh4A 380 5.12e+01 1qh4A a.83.1.1,d.128.1.2 18462,41197 1a70 97 5.14e+01 1awd d.15.4.1 37678 1q3eA 207 5.14e+01 b.82.3.2 95669 1z0sA 278 5.17e+01 2a3qA 170 5.17e+01 1j3mA 129 5.18e+01 d.129.7.1 103836 1gvhA 396 5.19e+01 a.1.1.2,b.43.4.2,c.25.1.5 70601,70602,70603 2fp4B 395 5.19e+01 1hynP 379 5.22e+01 1hynP d.112.1.2 61408 1e4mM 501 5.23e+01 1e70M c.1.8.4 59226 2fepA 289 5.23e+01 1hziA 129 5.29e+01 1rcb a.26.1.2 61449 1syyA 346 5.42e+01 a.25.1.2 106126 1f8fA 371 5.44e+01 b.35.1.2,c.2.1.1 83246,83247 1q2lA 939 5.45e+01 1iirA 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