# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jpaA 312 7.18e-01 d.144.1.7 67011 1m6jA 261 7.28e-01 c.1.1.1 78693 1m2kA 249 2.17e+00 c.31.1.5 84754 2fy6A 143 4.74e+00 2fqmA 75 5.50e+00 1sr2A 116 5.69e+00 1w1oA 534 6.27e+00 d.58.32.4,d.145.1.1 109071,109072 2gsfA 373 6.58e+00 1gqeA 365 6.93e+00 e.38.1.1 70351 1q5zA 177 6.98e+00 a.196.1.1 95954 1i9gA 280 7.16e+00 c.66.1.13 62090 1ooeA 236 9.75e+00 c.2.1.2 87196 2fmcA 82 1.00e+01 1kblA 873 1.00e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1t6uA 117 1.16e+01 a.24.22.1 106584 1q0gA 117 1.19e+01 a.24.22.1 104428 2b7aA 293 1.26e+01 1zd3A 555 1.26e+01 2a6cA 83 1.29e+01 1ogqA 313 1.33e+01 c.10.2.8 86996 1df7A 159 1.34e+01 3dfr c.71.1.1 34885 2furA 209 1.37e+01 1m3uA 264 1.50e+01 c.1.12.8 84784 1x6vA 630 1.52e+01 2ar0A 541 1.59e+01 1clvI 32 1.61e+01 1qfdA g.3.2.1 44075 1z0wA 207 1.72e+01 2aheA 267 1.77e+01 1pzqA 60 2.00e+01 a.34.3.1 95466 1thg 544 2.00e+01 1thg c.69.1.17 34763 1jsmA 325 2.03e+01 b.19.1.2 63264 1ewfA 456 2.09e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 1zccA 248 2.13e+01 1o4vA 183 2.21e+01 c.23.8.1 86628 1jmtB 28 2.38e+01 1xeaA 323 2.46e+01 c.2.1.3,d.81.1.5 109572,109573 1knvA 293 2.65e+01 c.52.1.7 68707 2esnA 310 2.66e+01 1d1qA 161 2.67e+01 1dg9A c.44.1.1 32642 1z2nX 324 2.72e+01 1h4vB 421 2.76e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 2fpmA 322 2.79e+01 1qrvA 73 2.87e+01 1cktA a.21.1.1 16425 2g62A 325 2.91e+01 1bg2 325 2.96e+01 1bg2 c.37.1.9 32189 1lwdA 413 3.09e+01 c.77.1.1 78265 1whrA 124 3.09e+01 1zv1A 65 3.10e+01 2bv5A 282 3.13e+01 1n6zA 105 3.27e+01 d.263.1.1 85369 2fiyA 309 3.29e+01 1xg2B 153 3.30e+01 1p68A 102 3.39e+01 k.8.1.1 94158 1vqsA 116 3.51e+01 2fywA 267 3.57e+01 2gdjA 264 3.58e+01 1dp4A 435 3.63e+01 1dp4A c.93.1.1 35710 1z6oA 212 3.64e+01 2g3kA 94 3.68e+01 2gboA 104 3.69e+01 1kq6A 141 3.73e+01 d.189.1.1 91020 1nox 205 3.76e+01 1nox d.90.1.1 40242 1bquA 215 3.98e+01 1bquA b.1.2.1,b.1.2.1 22066,22067 1m7vA 363 4.01e+01 d.174.1.1 78748 2db0A 253 4.03e+01 2acvA 463 4.05e+01 1yzxA 226 4.11e+01 1bf5A 545 4.20e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1qgtA 149 4.30e+01 1qgtA a.62.1.1 18135 1jb0I 38 4.30e+01 1jb0I f.23.17.1 62826 1j1vA 94 4.30e+01 a.4.12.2 83981 1sczA 233 4.31e+01 c.43.1.1 98802 2fu4A 83 4.34e+01 1jmxA 494 4.35e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 2g38B 198 4.43e+01 1f7uA 607 4.44e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1w2fA 276 4.50e+01 d.143.1.3 109125 1guxA 218 4.50e+01 1guxA a.74.1.3 18388 1tuaA 191 4.51e+01 d.51.1.1,d.51.1.1 107321,107322 1kv4A 42 4.52e+01 j.4.1.3 73051 1d6gA 47 4.53e+01 1d6gA g.33.1.1 44976 7taa 478 4.58e+01 7taa b.71.1.1,c.1.8.1 27778,28765 2fupA 168 4.60e+01 1t6aA 126 4.62e+01 d.129.8.1 106555 1amuA 563 4.64e+01 1amuA e.23.1.1 43351 1x4tA 92 4.69e+01 3fapB 94 4.69e+01 1nsgB a.24.7.1 16612 1w2iA 91 4.73e+01 d.58.10.1 109127 1ka9H 200 4.79e+01 c.23.16.1 77308 1qsdA 106 4.83e+01 1qsdA a.7.5.1 16335 2cdqA 510 4.85e+01 2c5rA 67 4.90e+01 1eybA 471 5.02e+01 1ey2A b.82.1.4 28115 1xkmB 25 5.03e+01 1mjhA 162 5.24e+01 1mjhA c.26.2.4 31639 1apyA 162 5.29e+01 1apyA d.153.1.5 42004 2arcA 164 5.31e+01 2arcA b.82.4.1 28148 1lvaA 258 5.31e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 2ezh 75 5.32e+01 2ezh a.4.1.2 16029 1elrA 131 5.40e+01 1a17 a.118.8.1 19209 1yt3A 375 5.46e+01 1m2oA 768 5.47e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1tujA 123 5.64e+01 1p2fA 220 5.71e+01 a.4.6.1,c.23.1.1 87720,87721 1ufaA 520 5.83e+01 a.8.3.3,c.6.2.4 99329,99330 1lvfA 110 5.88e+01 a.47.2.1 74280 1dkzA 219 6.00e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1h5qA 265 6.01e+01 1cydA c.2.1.2 60643 1yz7A 188 6.02e+01 1h4wA 224 6.05e+01 b.47.1.2 65622 1hfeL 421 6.08e+01 1fehA c.96.1.1,d.58.1.5 36018,39001 1xgsA 295 6.20e+01 1bn5 a.4.5.25,d.127.1.1 16216,41153 1zq9A 285 6.27e+01 1q9uA 130 6.57e+01 d.129.7.1 96314 1yozA 116 6.68e+01 1wr2A 238 6.73e+01 1p4xA 250 6.77e+01 a.4.5.28,a.4.5.28 87784,87785 1x6oA 174 6.79e+01 b.34.5.2,b.40.4.5 109493,109494 1qkrA 188 6.91e+01 1qkrA a.24.9.1 16628 1q4uA 151 6.97e+01 d.38.1.5 95828 1gnwA 211 7.01e+01 1gnwA a.45.1.1,c.47.1.5 17727,33021 1nz0A 118 7.02e+01 d.14.1.2 86433 1bd8 156 7.05e+01 1bd8 d.211.1.1 19157 1fk5A 93 7.24e+01 1rzl a.52.1.1 59866 1msc 129 7.24e+01 1msc d.85.1.1 40039 1x6iA 91 7.29e+01 1im5A 180 7.29e+01 c.33.1.3 66211 1i5nA 146 7.32e+01 1i5nA a.24.10.3 61805 1voqa 90 7.39e+01 2an3A 289 7.40e+01 1vf1A 229 7.48e+01 1eemA 241 7.65e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1sz2A 332 7.73e+01 1fs1B 141 7.79e+01 1vcbB a.157.1.1,d.42.1.1 19252,38664 1wmaA 276 7.87e+01 1u04A 771 7.88e+01 b.34.14.1,c.55.3.10 107539,107540 1xnaA 183 7.93e+01 1xnaA b.18.1.8 23773 2ddfA 257 7.94e+01 1i58A 189 7.95e+01 1b3qA d.122.1.3 61773 1y7wA 291 8.12e+01 1x7yA 400 8.15e+01 1wdcA 64 8.16e+01 1wdcA 1tzpA 255 8.24e+01 d.65.1.3 107520 1jb9A 316 8.34e+01 1fnc b.43.4.2,c.25.1.1 62840,62841 1jwiB 125 8.34e+01 d.169.1.1 67384 1eo6A 117 8.38e+01 1eo6A d.15.1.3 37609 2ctoA 93 8.38e+01 1k8kF 168 8.40e+01 d.198.2.1 68312 1v96A 149 8.41e+01 1zbfA 142 8.54e+01 1dkqA 410 8.59e+01 1dklA c.60.1.2 33998 2g19A 244 8.59e+01 2g6tA 306 8.66e+01 2a2rA 210 8.68e+01 1oyjA 231 8.78e+01 a.45.1.1,c.47.1.5 87597,87598 1lbkA 208 8.82e+01 a.45.1.1,c.47.1.5 73809,73810