# List of top-scoring protein chains for t06-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sz2A 332 4.67e-01 2fiyA 309 5.85e-01 2c4jA 218 2.02e+00 1jhgA 101 2.04e+00 1jhgA a.4.12.1 19009 1b4pA 217 2.38e+00 a.45.1.1,c.47.1.5 83158,83159 1bd8 156 3.57e+00 1bd8 d.211.1.1 19157 1jpaA 312 3.63e+00 d.144.1.7 67011 1qwoA 442 3.77e+00 c.60.1.2 104620 1eemA 241 5.40e+00 1eemA a.45.1.1,c.47.1.5 17717,33011 2gsvA 80 5.64e+00 1zv1A 65 5.68e+00 1zd3A 555 6.45e+00 1zejA 293 6.79e+00 1mzbA 136 7.62e+00 a.4.5.42 91497 1qfxA 460 7.74e+00 1qfxA c.60.1.2 33994 2iu5A 195 7.82e+00 1es5A 262 7.95e+00 1skf e.3.1.1 42679 1rkd 309 1.05e+01 1rkd c.72.1.1 34928 2fmcA 82 1.09e+01 1zboA 210 1.10e+01 1kpsB 171 1.22e+01 a.118.12.1 68787 1jb0I 38 1.22e+01 1jb0I f.23.17.1 62826 1m3uA 264 1.27e+01 c.1.12.8 84784 2aheA 267 1.29e+01 2a9iA 113 1.37e+01 2esnA 310 1.44e+01 1ytaA 180 1.50e+01 1w1oA 534 1.57e+01 d.58.32.4,d.145.1.1 109071,109072 2g6tA 306 1.59e+01 2b7aA 293 1.59e+01 2ctoA 93 1.60e+01 1x74A 360 1.60e+01 1m2kA 249 1.61e+01 c.31.1.5 84754 2fu4A 83 1.70e+01 1jk8B 190 1.82e+01 1iakB b.1.1.2,d.19.1.1 63147,63148 1ohfA 644 1.95e+01 b.121.4.8 93014 1z2uA 150 2.06e+01 1sq5A 308 2.07e+01 c.37.1.6 105882 1sszA 34 2.08e+01 j.35.1.1 105999 1ewfA 456 2.28e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 2fkzA 155 2.37e+01 1zkeA 83 2.39e+01 1or7A 194 2.41e+01 a.4.13.2,a.177.1.1 87332,87333 1ufaA 520 2.43e+01 a.8.3.3,c.6.2.4 99329,99330 1m6jA 261 2.60e+01 c.1.1.1 78693 1n1jA 93 2.63e+01 a.22.1.3 79813 1d8wA 426 2.64e+01 1de5A c.1.15.2 29394 1whrA 124 2.65e+01 1w7lA 422 2.82e+01 c.67.1.1 109226 1kblA 873 2.84e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1tzvA 142 2.88e+01 a.79.1.1 107526 1x6vA 630 2.93e+01 1okcA 297 3.13e+01 f.42.1.1 93248 2furA 209 3.20e+01 2gsfA 373 3.27e+01 1cojA 212 3.29e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1f7uA 607 3.40e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 2f2gA 221 3.44e+01 1z6uA 150 3.51e+01 1jmtB 28 3.57e+01 1sqgA 429 3.60e+01 a.79.1.3,c.66.1.38 105912,105913 1z2nX 324 3.68e+01 1fg7A 356 3.71e+01 1gewA c.67.1.1 59819 1l9lA 74 3.79e+01 a.64.1.1 77827 2fqmA 75 3.81e+01 1o5hA 214 3.88e+01 a.191.1.1 92497 1sra 151 4.03e+01 1sra a.39.1.3 17190 2gdjA 264 4.14e+01 1xo0A 324 4.14e+01 2afwA 329 4.22e+01 1vp2A 208 4.30e+01 1xmeA 568 4.33e+01 1im8A 244 4.33e+01 c.66.1.14 66212 1xfsA 178 4.45e+01 d.129.3.5 109589 1ituA 369 4.49e+01 c.1.9.7 71423 1wjgA 137 4.51e+01 1i9gA 280 4.83e+01 c.66.1.13 62090 2fpmA 322 4.85e+01 1hdiA 413 4.89e+01 16pk c.86.1.1 60964 1yzxA 226 4.91e+01 1t7rA 269 4.95e+01 a.123.1.1 106635 1jakA 512 5.00e+01 c.1.8.6,d.92.2.1 66472,66473 2g62A 325 5.08e+01 1xrsA 516 5.30e+01 1h32A 261 5.40e+01 a.3.1.8,a.3.1.8 76618,76619 1jb0A 755 5.40e+01 1jb0A f.29.1.1 62820 1gwuA 309 5.45e+01 a.93.1.1 83351 1ycsB 239 5.49e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 1xioA 261 5.59e+01 1tkeA 224 5.68e+01 2afaA 425 5.77e+01 1jy2N 53 5.77e+01 h.1.8.1 67440 1kqfC 217 5.78e+01 f.21.1.1 72874 2fywA 267 5.80e+01 1m2oA 768 5.89e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 4ubpC 570 5.91e+01 1ubpC b.92.1.1,c.1.9.2 28431,29053 1ut7A 171 6.01e+01 b.143.1.1 99906 1iqcA 308 6.02e+01 a.3.1.5,a.3.1.5 66266,66267 1noyA 388 6.05e+01 1clqA c.55.3.5 33713 1ru3A 732 6.14e+01 e.26.1.3 97835 1b0xA 94 6.16e+01 1b4fA a.60.1.2 17933 1llmC 88 6.24e+01 g.37.1.1,g.37.1.1 91059,91060 2g7gA 213 6.30e+01 1pa7A 130 6.33e+01 a.40.1.1 94410 1yy7A 213 6.38e+01 1v4aA 440 6.45e+01 a.24.16.4,d.218.1.9 108350,108351 1w07A 659 6.50e+01 1d6gA 47 6.50e+01 1d6gA g.33.1.1 44976 1vqoI 162 6.59e+01 1n8vA 112 6.71e+01 a.118.21.1 85457 1zq9A 285 6.77e+01 1yozA 116 6.86e+01 1x7yA 400 6.90e+01 1zbfA 142 6.93e+01 1thg 544 6.94e+01 1thg c.69.1.17 34763 2fhfA 1083 7.26e+01 1gqeA 365 7.40e+01 e.38.1.1 70351 1r6wA 322 7.41e+01 c.1.11.2,d.54.1.1 97165,97166 1ccwB 483 7.43e+01 1cb7B c.1.19.2 29646 2a7mA 250 7.83e+01 1x6iA 91 7.83e+01 2c7pA 327 8.00e+01 1ujcA 161 8.01e+01 1mp8A 281 8.07e+01 d.144.1.7 91384 1m6kA 251 8.10e+01 e.3.1.1 78695 1ssqA 267 8.15e+01 b.81.1.6 105993 1k6iA 352 8.20e+01 c.2.1.2 68223 1vls 146 8.23e+01 1vls a.24.2.1 16532 1sheA 103 8.27e+01 d.274.1.1 105551 1jvr 137 8.39e+01 1jvr a.61.1.2 18132 1q3eA 207 8.47e+01 b.82.3.2 95669 1sr2A 116 8.51e+01 1rvgA 305 8.66e+01 c.1.10.2 97920 1t8kA 77 8.84e+01 a.28.1.1 106666 1b35A 260 8.96e+01 1b35A b.121.4.1 23333 1ekjA 221 8.97e+01 1ekjB c.53.2.1 33364