# List of top-scoring protein chains for t06-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sz2A 332 1.71e-01 1qfxA 460 7.05e-01 1qfxA c.60.1.2 33994 1zejA 293 7.63e-01 2c4jA 218 8.48e-01 1jpaA 312 9.72e-01 d.144.1.7 67011 1qwoA 442 1.19e+00 c.60.1.2 104620 1jhgA 101 1.27e+00 1jhgA a.4.12.1 19009 1b4pA 217 1.29e+00 a.45.1.1,c.47.1.5 83158,83159 1bd8 156 1.29e+00 1bd8 d.211.1.1 19157 1zd3A 555 1.42e+00 1eemA 241 1.66e+00 1eemA a.45.1.1,c.47.1.5 17717,33011 2fu4A 83 1.89e+00 2fiyA 309 2.15e+00 1kblA 873 2.16e+00 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1mzbA 136 2.46e+00 a.4.5.42 91497 2iu5A 195 2.55e+00 1w1oA 534 2.71e+00 d.58.32.4,d.145.1.1 109071,109072 1zv1A 65 3.15e+00 1x6vA 630 4.48e+00 1d8wA 426 4.58e+00 1de5A c.1.15.2 29394 1ufaA 520 4.67e+00 a.8.3.3,c.6.2.4 99329,99330 1im5A 180 4.91e+00 c.33.1.3 66211 1k6iA 352 5.66e+00 c.2.1.2 68223 1okcA 297 5.77e+00 f.42.1.1 93248 1z2uA 150 5.82e+00 1sszA 34 6.12e+00 j.35.1.1 105999 1zboA 210 6.22e+00 2furA 209 6.68e+00 1jk8B 190 6.75e+00 1iakB b.1.1.2,d.19.1.1 63147,63148 1zq9A 285 7.40e+00 1jb0I 38 7.41e+00 1jb0I f.23.17.1 62826 1hdiA 413 7.74e+00 16pk c.86.1.1 60964 1zkeA 83 8.31e+00 1z2nX 324 9.60e+00 2gsvA 80 9.85e+00 1gweA 503 1.00e+01 e.5.1.1 70667 1sq5A 308 1.03e+01 c.37.1.6 105882 2b7aA 293 1.03e+01 1whrA 124 1.06e+01 2aheA 267 1.09e+01 1m98A 317 1.13e+01 a.175.1.1,d.17.4.6 78866,78867 2afwA 329 1.18e+01 1jhdA 396 1.25e+01 b.122.1.3,c.26.1.5 66712,66713 1no1A 126 1.31e+01 a.179.1.1 85913 1gcqC 70 1.42e+01 1gcpA b.34.2.1 60436 1es5A 262 1.44e+01 1skf e.3.1.1 42679 1jmtB 28 1.49e+01 2gdjA 264 1.51e+01 1xgkA 352 1.52e+01 1t1uA 639 1.54e+01 1x74A 360 1.54e+01 1vls 146 1.65e+01 1vls a.24.2.1 16532 1ycsB 239 1.66e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 1im8A 244 1.67e+01 c.66.1.14 66212 1tkeA 224 1.68e+01 1b8aA 438 1.69e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 2fh1A 344 1.69e+01 1n1jA 93 1.71e+01 a.22.1.3 79813 1p8xA 344 1.72e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 1qwyA 291 1.89e+01 b.84.3.2 96509 1qd9A 124 1.90e+01 1qu9A d.79.1.1 39758 1i9gA 280 1.90e+01 c.66.1.13 62090 2g6tA 306 1.93e+01 2bbrA 195 1.97e+01 1yozA 116 2.04e+01 2esnA 310 2.10e+01 1m6kA 251 2.10e+01 e.3.1.1 78695 1d6gA 47 2.11e+01 1d6gA g.33.1.1 44976 1rh9A 373 2.14e+01 2ctoA 93 2.16e+01 1gwuA 309 2.17e+01 a.93.1.1 83351 1kpsB 171 2.29e+01 a.118.12.1 68787 1ogsA 497 2.31e+01 b.71.1.2,c.1.8.3 86997,86998 2gsfA 373 2.36e+01 2fpmA 322 2.54e+01 1v4aA 440 2.54e+01 a.24.16.4,d.218.1.9 108350,108351 2gw6A 123 2.62e+01 1pn0A 665 2.62e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1n1fA 159 2.63e+01 a.26.1.3 79803 1c52 131 2.67e+01 1c52 a.3.1.1 15810 1tzvA 142 2.70e+01 a.79.1.1 107526 1ewfA 456 2.79e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 2fgtA 417 2.79e+01 2fqmA 75 2.80e+01 1ut7A 171 2.82e+01 b.143.1.1 99906 1x91A 153 2.89e+01 1ppjF 110 3.04e+01 f.27.1.1 104262 1t92A 116 3.06e+01 1jae 471 3.09e+01 1smd b.71.1.1,c.1.8.1 27773,28760 1pq1A 196 3.19e+01 f.1.4.1 94986 1b06A 210 3.22e+01 1avmA a.2.11.1,d.44.1.1 15740,38737 1s6lA 212 3.24e+01 1fg7A 356 3.27e+01 1gewA c.67.1.1 59819 1nu7D 282 3.27e+01 a.8.6.1,a.8.6.1 92191,92192 1zxkA 98 3.30e+01 1tqyB 415 3.33e+01 c.95.1.1,c.95.1.1 107247,107248 1m48A 133 3.39e+01 a.26.1.2 74443 1h2sA 225 3.45e+01 f.13.1.1 76578 1vbiA 344 3.47e+01 1xl7A 612 3.50e+01 1nykA 165 3.50e+01 b.33.1.1 86408 1rzhL 281 3.53e+01 f.26.1.1 98164 1sqgA 429 3.55e+01 a.79.1.3,c.66.1.38 105912,105913 1geeA 261 3.57e+01 c.2.1.2 90509 1j8mF 297 3.58e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 2f96A 224 3.58e+01 1ohfA 644 3.63e+01 b.121.4.8 93014 1wjgA 137 3.72e+01 1dbwA 126 3.76e+01 1dbwA c.23.1.1 31095 2c78A 405 3.82e+01 1fi2A 201 3.85e+01 1fi2A b.82.1.2 59845 2aplA 157 3.85e+01 1mp8A 281 3.91e+01 d.144.1.7 91384 1w07A 659 3.94e+01 1m3uA 264 3.96e+01 c.1.12.8 84784 2ccmA 191 4.03e+01 1q87A 221 4.04e+01 e.47.1.1 96192 1x31D 99 4.09e+01 1acf 125 4.10e+01 3nul d.110.1.1 40882 1iqcA 308 4.10e+01 a.3.1.5,a.3.1.5 66266,66267 1xfsA 178 4.18e+01 d.129.3.5 109589 1yy7A 213 4.18e+01 1scfA 273 4.20e+01 1exzA a.26.1.2 16873 2ewcA 126 4.23e+01 2c7pA 327 4.27e+01 1v9nA 360 4.27e+01 2et1A 201 4.29e+01 1zbfA 142 4.44e+01 1z0wA 207 4.46e+01 2dbnA 461 4.47e+01 2afdA 88 4.50e+01 1oyjA 231 4.58e+01 a.45.1.1,c.47.1.5 87597,87598 1sra 151 4.60e+01 1sra a.39.1.3 17190 2fkzA 155 4.63e+01 1hr6A 475 4.75e+01 1hr6A d.185.1.1,d.185.1.1 61164,61165 1p4cA 380 4.83e+01 c.1.4.1 94100 1s5lX 50 4.93e+01 1ugpA 203 4.94e+01 d.149.1.1 107831 1w1nA 33 4.98e+01 2a9iA 113 5.04e+01 1z6uA 150 5.14e+01 2fb6A 117 5.18e+01 1vr5A 547 5.36e+01 1o5kA 306 5.53e+01 c.1.10.1 92504 1qh4A 380 5.60e+01 1qh4A a.83.1.1,d.128.1.2 18462,41197 1vpqA 273 5.70e+01 1x54A 434 5.80e+01 1tqxA 227 5.81e+01 1gjwA 637 5.83e+01 b.71.1.1,c.1.8.1 60582,60583 1repC 251 5.87e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1sheA 103 5.99e+01 d.274.1.1 105551 1cojA 212 6.00e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1llmC 88 6.01e+01 g.37.1.1,g.37.1.1 91059,91060 1ds1A 324 6.03e+01 1drtA b.82.2.2 28127 2cygA 312 6.07e+01 1px5A 349 6.09e+01 a.160.1.2,d.218.1.6 95277,95278 2g3kA 94 6.12e+01 1bquA 215 6.12e+01 1bquA b.1.2.1,b.1.2.1 22066,22067 1qo7A 394 6.19e+01 1qo7A c.69.1.11 34697 1vjeA 166 6.35e+01 d.185.1.2 100807 1wqwA 235 6.37e+01 1kf6D 119 6.42e+01 f.21.2.2 72400 1lghA 56 6.47e+01 1lghA f.3.1.1 43733 1umgA 362 6.49e+01 d.280.1.1 107956 1h65A 270 6.52e+01 c.37.1.8 65640 2fmcA 82 6.54e+01 1mr7A 209 6.55e+01 b.81.1.3 91430 2g38B 198 6.66e+01 1syyA 346 6.70e+01 a.25.1.2 106126 1r3sA 367 6.71e+01 c.1.22.1 96963 1u9yA 284 6.78e+01 2f5tX 233 6.79e+01 1rzhM 307 6.83e+01 f.26.1.1 98165 1ru3A 732 6.85e+01 e.26.1.3 97835 1xs1A 193 6.86e+01 2g62A 325 6.87e+01 1eyvA 156 6.89e+01 1eyvA a.79.1.1 18446 1xioA 261 6.93e+01 1v37A 177 6.94e+01 1xo0A 324 7.03e+01 1xqsA 280 7.16e+01 1jatA 155 7.17e+01 1u9aA d.20.1.1 62818 1fpoA 171 7.18e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 1hrkA 359 7.19e+01 1hrkA c.92.1.1 61228 1t7rA 269 7.22e+01 a.123.1.1 106635 2ddfA 257 7.24e+01 1xrsA 516 7.28e+01 1n0qA 93 7.31e+01 k.37.1.1 79754 1uvqB 198 7.31e+01 b.1.1.2,d.19.1.1 100064,100065 1bku 33 7.33e+01 1bku j.6.1.1 46104 1v73A 342 7.33e+01 1xg2B 153 7.35e+01 1uayA 242 7.35e+01 c.2.1.2 88390 1vqoD 177 7.37e+01 1x8vA 455 7.38e+01 1b79A 119 7.40e+01 1b79A a.81.1.1 18451 1zvnA 99 7.41e+01 1bg2 325 7.43e+01 1bg2 c.37.1.9 32189 2c5rA 67 7.55e+01 1jakA 512 7.60e+01 c.1.8.6,d.92.2.1 66472,66473 1opjA 293 7.65e+01 d.144.1.7 87230 1cfzA 162 7.66e+01 1cfzA c.56.1.1 33754 2fj6A 82 7.69e+01 1ug6A 431 7.72e+01 c.1.8.4 88490 2afaA 425 7.75e+01 2a2fX 325 7.80e+01 1b0xA 94 7.81e+01 1b4fA a.60.1.2 17933 1eumA 165 7.90e+01 1eumA a.25.1.1 59507 1sfdA 105 7.90e+01 b.6.1.1 105480 1suwA 249 7.90e+01 e.52.1.1 106027 1z0sA 278 8.00e+01 1tueA 212 8.00e+01 c.37.1.20 107323 2cz2A 223 8.00e+01 2b1xA 470 8.12e+01 1zc6A 305 8.18e+01 1r0pA 312 8.19e+01 d.144.1.7 96734 1nw3A 416 8.19e+01 c.66.1.31 86288 1u5dA 108 8.20e+01 1dp4A 435 8.21e+01 1dp4A c.93.1.1 35710 1o17A 345 8.28e+01 a.46.2.1,c.27.1.1 80765,80766 1ozhA 566 8.37e+01 c.31.1.3,c.36.1.5,c.36.1.9 93833,93834,93835 1k1aA 241 8.42e+01 d.211.1.1 67992 1amuA 563 8.49e+01 1amuA e.23.1.1 43351 1ufzA 83 8.50e+01 a.5.9.1 107821 1tu7A 208 8.52e+01 1csh 435 8.55e+01 1csh a.103.1.1 18880 1thg 544 8.59e+01 1thg c.69.1.17 34763 1g5aA 628 8.60e+01 b.71.1.1,c.1.8.1 65152,65153 2a2pA 129 8.60e+01 1ez0A 510 8.64e+01 1eyyA c.82.1.1 35385 1lwdA 413 8.65e+01 c.77.1.1 78265 1fmtA 314 8.68e+01 1fmtA b.46.1.1,c.65.1.1 25758,34174 1qtnB 95 8.71e+01 1pauB 1noyA 388 8.73e+01 1clqA c.55.3.5 33713 1apyA 162 8.82e+01 1apyA d.153.1.5 42004 1m93B 245 8.85e+01 2cqsA 842 8.87e+01 1gdeA 389 8.92e+01 c.67.1.1 60456 1n45A 233 8.95e+01 a.132.1.1 79981 1w85A 368 8.96e+01