# List of top-scoring protein chains for t06-100-30-bys-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ufaA 520 2.05e-01 a.8.3.3,c.6.2.4 99329,99330 2fiyA 309 3.28e-01 1sz2A 332 5.00e-01 1jpaA 312 1.26e+00 d.144.1.7 67011 1jhgA 101 1.27e+00 1jhgA a.4.12.1 19009 1zd3A 555 1.64e+00 1jb0I 38 1.91e+00 1jb0I f.23.17.1 62826 1w1oA 534 1.98e+00 d.58.32.4,d.145.1.1 109071,109072 2b7aA 293 2.44e+00 1zv1A 65 3.10e+00 1kblA 873 4.18e+00 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1hdiA 413 4.22e+00 16pk c.86.1.1 60964 1z2nX 324 4.32e+00 2gdjA 264 4.45e+00 1ewfA 456 4.46e+00 1bp1 d.83.1.1,d.83.1.1 40024,40025 1bd8 156 4.60e+00 1bd8 d.211.1.1 19157 1jmxA 494 4.61e+00 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 1qfxA 460 4.64e+00 1qfxA c.60.1.2 33994 1rkd 309 4.75e+00 1rkd c.72.1.1 34928 1jmtB 28 4.90e+00 1bf5A 545 5.21e+00 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 2fpmA 322 5.29e+00 1m2kA 249 5.32e+00 c.31.1.5 84754 2c5rA 67 6.30e+00 1cojA 212 6.34e+00 1avmA a.2.11.1,d.44.1.1 15737,38734 2fmcA 82 6.65e+00 1zboA 210 7.53e+00 2afwA 329 7.79e+00 2cygA 312 8.76e+00 1x91A 153 8.96e+00 1sqgA 429 9.50e+00 a.79.1.3,c.66.1.38 105912,105913 2c4jA 218 9.93e+00 2ccmA 191 9.98e+00 1d8wA 426 1.02e+01 1de5A c.1.15.2 29394 1pa7A 130 1.03e+01 a.40.1.1 94410 1p4cA 380 1.12e+01 c.1.4.1 94100 1zkeA 83 1.16e+01 2f2gA 221 1.17e+01 1jk8B 190 1.20e+01 1iakB b.1.1.2,d.19.1.1 63147,63148 2aheA 267 1.21e+01 1m93B 245 1.22e+01 1yzxA 226 1.24e+01 1xmeA 568 1.25e+01 1sszA 34 1.25e+01 j.35.1.1 105999 1wjgA 137 1.32e+01 1tzvA 142 1.38e+01 a.79.1.1 107526 1t92A 116 1.43e+01 1tqxA 227 1.43e+01 1bh9B 89 1.47e+01 1bh9B a.22.1.3 16485 2a3qA 170 1.49e+01 1zq9A 285 1.49e+01 2b1eA 564 1.58e+01 2fqmA 75 1.64e+01 2bemA 170 1.65e+01 1qd9A 124 1.67e+01 1qu9A d.79.1.1 39758 1w07A 659 1.70e+01 1hfeL 421 1.70e+01 1fehA c.96.1.1,d.58.1.5 36018,39001 2ctoA 93 1.71e+01 1z2uA 150 1.75e+01 1mzbA 136 1.75e+01 a.4.5.42 91497 1whrA 124 1.77e+01 1zbfA 142 1.78e+01 1ohfA 644 1.79e+01 b.121.4.8 93014 1li5A 461 1.81e+01 a.27.1.1,c.26.1.1 73912,73913 2gsfA 373 1.84e+01 1tkeA 224 1.85e+01 1im5A 180 1.85e+01 c.33.1.3 66211 1yy7A 213 1.86e+01 2furA 209 1.93e+01 1m6jA 261 1.98e+01 c.1.1.1 78693 1x74A 360 2.04e+01 1xioA 261 2.04e+01 1geeA 261 2.06e+01 c.2.1.2 90509 2esnA 310 2.08e+01 2iu5A 195 2.09e+01 1kpsB 171 2.21e+01 a.118.12.1 68787 1x6iA 91 2.22e+01 1thg 544 2.22e+01 1thg c.69.1.17 34763 1i9gA 280 2.30e+01 c.66.1.13 62090 1jhdA 396 2.31e+01 b.122.1.3,c.26.1.5 66712,66713 1kf6D 119 2.32e+01 f.21.2.2 72400 1mun 225 2.33e+01 1mun a.96.1.2 18744 1qwoA 442 2.42e+01 c.60.1.2 104620 1h2sA 225 2.69e+01 f.13.1.1 76578 1zhcA 76 2.72e+01 1zejA 293 2.72e+01 1z6uA 150 2.77e+01 2a7mA 250 2.81e+01 1vgmA 378 2.84e+01 2fgtA 417 2.87e+01 1yozA 116 2.90e+01 2a9iA 113 2.97e+01 2czrA 226 3.00e+01 2fb6A 117 3.01e+01 2givA 295 3.08e+01 2fikA 287 3.11e+01 1t8kA 77 3.16e+01 a.28.1.1 106666 1xfjA 261 3.16e+01 d.194.1.2 109585 1eemA 241 3.20e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1qu9A 128 3.22e+01 1qu9A d.79.1.1 39755 1m98A 317 3.26e+01 a.175.1.1,d.17.4.6 78866,78867 1jakA 512 3.28e+01 c.1.8.6,d.92.2.1 66472,66473 1x4tA 92 3.31e+01 1h99A 224 3.36e+01 a.142.1.1,a.142.1.1 60814,60815 1k6iA 352 3.39e+01 c.2.1.2 68223 2br9A 234 3.39e+01 1ytaA 180 3.41e+01 1wmmA 145 3.48e+01 1h4vB 421 3.51e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1im8A 244 3.56e+01 c.66.1.14 66212 1i2aA 219 3.58e+01 e.24.1.1 90660 1sheA 103 3.67e+01 d.274.1.1 105551 1vls 146 3.68e+01 1vls a.24.2.1 16532 1z83A 196 3.68e+01 1qh4A 380 3.79e+01 1qh4A a.83.1.1,d.128.1.2 18462,41197 2ewcA 126 3.81e+01 2fkzA 155 3.84e+01 1apyA 162 3.93e+01 1apyA d.153.1.5 42004 2gtqA 867 3.97e+01 1lvaA 258 4.04e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1lghA 56 4.07e+01 1lghA f.3.1.1 43733 2g3kA 94 4.09e+01 1tzpA 255 4.26e+01 d.65.1.3 107520 2es9A 115 4.32e+01 2gwgA 350 4.34e+01 1no1A 126 4.40e+01 a.179.1.1 85913 2f96A 224 4.63e+01 1n1jA 93 4.70e+01 a.22.1.3 79813 1sr2A 116 4.77e+01 1vpqA 273 4.82e+01 1x7yA 400 4.83e+01 1j8mF 297 4.85e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1rtwA 220 4.88e+01 a.132.1.3 97823 1jae 471 4.89e+01 1smd b.71.1.1,c.1.8.1 27773,28760 2cqsA 842 4.91e+01 1m3uA 264 4.95e+01 c.1.12.8 84784 1r6wA 322 4.97e+01 c.1.11.2,d.54.1.1 97165,97166 1rzsA 61 4.99e+01 a.35.1.2 105139 1mtyD 512 5.05e+01 1mhyD a.25.1.2 16742 1gwuA 309 5.06e+01 a.93.1.1 83351 1pn0A 665 5.09e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 2a2mA 258 5.15e+01 1xfsA 178 5.16e+01 d.129.3.5 109589 1jy2N 53 5.27e+01 h.1.8.1 67440 1sf8A 126 5.28e+01 d.271.1.1 105472 2ezh 75 5.28e+01 2ezh a.4.1.2 16029 1w85A 368 5.39e+01 1fzqA 181 5.50e+01 1hurA c.37.1.8 32060 1fehA 574 5.56e+01 1fehA c.96.1.1,d.15.4.2,d.58.1.5 36015,37690,38998 1hlvA 131 5.61e+01 a.4.1.7,a.4.1.7 65854,65855 1j30A 144 5.65e+01 a.25.1.1 90806 1gjjA 168 5.68e+01 a.140.1.1,a.140.1.1 83291,83292 1ssqA 267 5.72e+01 b.81.1.6 105993 1qahA 136 5.74e+01 d.79.1.1 96338 1tqyB 415 5.79e+01 c.95.1.1,c.95.1.1 107247,107248 2fu4A 83 5.84e+01 1h3nA 878 5.85e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1o9wA 177 5.88e+01 b.2.3.5 86713 1zy9A 564 5.92e+01 1b4pA 217 5.94e+01 a.45.1.1,c.47.1.5 83158,83159 2g62A 325 5.99e+01 1n8vA 112 6.06e+01 a.118.21.1 85457 1fpoA 171 6.16e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 4hb1 108 6.19e+01 4hb1 k.8.1.1 46414 1p9aG 290 6.23e+01 c.10.2.7 87990 1z5zA 271 6.34e+01 1ab8A 220 6.35e+01 1azsA d.58.29.1 39414 1ka9H 200 6.37e+01 c.23.16.1 77308 2cmxA 118 6.39e+01 1ux5A 411 6.42e+01 a.207.1.1 100144 1clvI 32 6.44e+01 1qfdA g.3.2.1 44075 2a5yB 549 6.48e+01 1qv1A 195 6.50e+01 a.39.1.5 96347 2fupA 168 6.64e+01 1d4xG 126 6.66e+01 1d0nA d.109.1.1 59109 4ubpC 570 6.66e+01 1ubpC b.92.1.1,c.1.9.2 28431,29053 2cglA 489 6.73e+01 1iujA 106 6.74e+01 d.58.4.5 90701 1d5rA 324 6.76e+01 1d5rA b.7.1.1,c.45.1.1 23181,32697 1s5lX 50 6.77e+01 1hn0A 1021 6.90e+01 a.102.3.2,b.18.1.17,b.24.1.1,b.30.5.2 83616,83617,83618,83619 1knvA 293 6.94e+01 c.52.1.7 68707 1ylxA 103 6.97e+01 2auwA 170 7.01e+01 2fywA 267 7.04e+01 1guxA 218 7.07e+01 1guxA a.74.1.3 18388 1ppjF 110 7.09e+01 f.27.1.1 104262 1o5hA 214 7.15e+01 a.191.1.1 92497 1bjt 793 7.19e+01 1bjt e.11.1.1 43249 2bfdA 400 7.19e+01 1n1fA 159 7.27e+01 a.26.1.3 79803 1v73A 342 7.29e+01 2bc4B 211 7.30e+01 2f02A 323 7.38e+01 1irzA 64 7.38e+01 a.4.1.11 76772 1t6uA 117 7.49e+01 a.24.22.1 106584 1hz4A 373 7.56e+01 a.118.8.2 65960 1ln4A 104 7.61e+01 d.68.4.1 74043 1npyA 271 7.61e+01 c.2.1.7,c.58.1.5 85995,85996 1u8vA 490 7.64e+01 2g8yA 385 7.66e+01 1p2fA 220 7.67e+01 a.4.6.1,c.23.1.1 87720,87721 1bo4A 168 7.72e+01 1bo4A d.108.1.1 40798 1amf 233 7.72e+01 1wod c.94.1.1 35833 2b4nA 42 7.79e+01 1vp2A 208 7.84e+01 1u5dA 108 7.86e+01 1x8vA 455 7.88e+01 1j1nA 492 7.92e+01 c.94.1.1 83978 2gboA 104 8.04e+01 1bupA 386 8.08e+01 1ba1 c.55.1.1,c.55.1.1 33377,33378 2ddfA 257 8.11e+01 1vbiA 344 8.17e+01 1kq3A 376 8.27e+01 e.22.1.2 68790 1m48A 133 8.33e+01 a.26.1.2 74443 1zd8A 227 8.38e+01 2f2bA 246 8.54e+01 1ngkA 128 8.54e+01 a.1.1.1 85673 1dfwA 25 8.60e+01 j.35.1.1 46255 1qtnB 95 8.65e+01 1pauB 1x31D 99 8.67e+01 1jvr 137 8.67e+01 1jvr a.61.1.2 18132 1p1mA 406 8.70e+01 b.92.1.4,c.1.9.9 87696,87697 1kv4A 42 8.72e+01 j.4.1.3 73051 1alvA 173 8.86e+01 1alvA a.39.1.8 17370 1gegA 256 8.89e+01 1ybvA c.2.1.2 29888 2ashA 381 8.93e+01 1rfkA 98 8.94e+01 2g19A 244 8.95e+01