# List of top-scoring protein chains for t06-100-30-alpha-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1d8wA 426 1.38e-01 1de5A c.1.15.2 29394 1zd3A 555 2.47e-01 1jhgA 101 3.61e-01 1jhgA a.4.12.1 19009 1jpaA 312 6.04e-01 d.144.1.7 67011 1sz2A 332 1.20e+00 2a9iA 113 1.51e+00 1qfxA 460 2.33e+00 1qfxA c.60.1.2 33994 2ccmA 191 2.44e+00 2gsfA 373 2.67e+00 1zv1A 65 2.67e+00 1yzxA 226 3.46e+00 2b7aA 293 3.78e+00 2aheA 267 4.08e+00 1jb0I 38 4.16e+00 1jb0I f.23.17.1 62826 1x6vA 630 4.36e+00 1xioA 261 4.42e+00 2ctoA 93 4.62e+00 1kblA 873 4.77e+00 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1jakA 512 5.26e+00 c.1.8.6,d.92.2.1 66472,66473 1m48A 133 5.40e+00 a.26.1.2 74443 2fqmA 75 5.96e+00 1x7yA 400 5.96e+00 1jmtB 28 6.00e+00 1qd9A 124 6.00e+00 1qu9A d.79.1.1 39758 1w07A 659 6.06e+00 2bemA 170 6.12e+00 1qu9A 128 6.14e+00 1qu9A d.79.1.1 39755 2fiyA 309 6.70e+00 1bd8 156 6.81e+00 1bd8 d.211.1.1 19157 2iu5A 195 6.93e+00 1ewfA 456 7.37e+00 1bp1 d.83.1.1,d.83.1.1 40024,40025 2fmcA 82 7.45e+00 1m2kA 249 7.52e+00 c.31.1.5 84754 1w1oA 534 8.13e+00 d.58.32.4,d.145.1.1 109071,109072 1m2oA 768 8.26e+00 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 2afwA 329 8.34e+00 1es5A 262 9.14e+00 1skf e.3.1.1 42679 1z2nX 324 9.88e+00 1tzvA 142 9.96e+00 a.79.1.1 107526 1cojA 212 1.04e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1t92A 116 1.05e+01 1qwoA 442 1.05e+01 c.60.1.2 104620 1whrA 124 1.06e+01 1ssqA 267 1.09e+01 b.81.1.6 105993 2fu4A 83 1.09e+01 1sszA 34 1.13e+01 j.35.1.1 105999 2c4jA 218 1.15e+01 1im5A 180 1.16e+01 c.33.1.3 66211 1tqxA 227 1.16e+01 2bjqA 345 1.25e+01 1rkd 309 1.35e+01 1rkd c.72.1.1 34928 1ufaA 520 1.36e+01 a.8.3.3,c.6.2.4 99329,99330 1r6wA 322 1.38e+01 c.1.11.2,d.54.1.1 97165,97166 1v96A 149 1.43e+01 1x91A 153 1.46e+01 1jhdA 396 1.47e+01 b.122.1.3,c.26.1.5 66712,66713 1v4aA 440 1.54e+01 a.24.16.4,d.218.1.9 108350,108351 2fpmA 322 1.55e+01 1t7rA 269 1.55e+01 a.123.1.1 106635 2gdjA 264 1.57e+01 1zq9A 285 1.59e+01 1wmmA 145 1.61e+01 1jy2N 53 1.64e+01 h.1.8.1 67440 1i9gA 280 1.65e+01 c.66.1.13 62090 1p4cA 380 1.74e+01 c.1.4.1 94100 1z2uA 150 1.84e+01 1ngzA 213 1.84e+01 b.1.1.1,b.1.1.2 80500,80501 2gsvA 80 1.86e+01 2fgtA 417 1.86e+01 2furA 209 1.96e+01 1pa7A 130 2.05e+01 a.40.1.1 94410 1pw4A 451 2.05e+01 f.38.1.1 95198 1px5A 349 2.07e+01 a.160.1.2,d.218.1.6 95277,95278 2a7mA 250 2.08e+01 1dciA 275 2.13e+01 1dciA c.14.1.3 30918 2cqsA 842 2.14e+01 1m93B 245 2.20e+01 2fb6A 117 2.28e+01 1p1mA 406 2.33e+01 b.92.1.4,c.1.9.9 87696,87697 1iqcA 308 2.39e+01 a.3.1.5,a.3.1.5 66266,66267 1rypH 205 2.44e+01 d.153.1.4 41876 1tueA 212 2.46e+01 c.37.1.20 107323 1geeA 261 2.46e+01 c.2.1.2 90509 1m98A 317 2.47e+01 a.175.1.1,d.17.4.6 78866,78867 1ppjF 110 2.49e+01 f.27.1.1 104262 2eu8A 216 2.50e+01 1hfeL 421 2.51e+01 1fehA c.96.1.1,d.58.1.5 36018,39001 1jk8B 190 2.55e+01 1iakB b.1.1.2,d.19.1.1 63147,63148 1mzbA 136 2.63e+01 a.4.5.42 91497 1p2fA 220 2.65e+01 a.4.6.1,c.23.1.1 87720,87721 1kpsB 171 2.65e+01 a.118.12.1 68787 1zanL 214 2.67e+01 1t8kA 77 2.70e+01 a.28.1.1 106666 1j8mF 297 2.75e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 1nddA 76 2.85e+01 1ubi d.15.1.1 37599 2gboA 104 2.87e+01 1x6oA 174 2.94e+01 b.34.5.2,b.40.4.5 109493,109494 1xfsA 178 2.96e+01 d.129.3.5 109589 1hdiA 413 2.97e+01 16pk c.86.1.1 60964 2bneA 241 2.99e+01 2f2gA 221 3.11e+01 1x8vA 455 3.15e+01 2g19A 244 3.15e+01 1jae 471 3.17e+01 1smd b.71.1.1,c.1.8.1 27773,28760 1jmxA 494 3.17e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 2cvlA 124 3.21e+01 2givA 295 3.22e+01 1zy9A 564 3.28e+01 1li5A 461 3.29e+01 a.27.1.1,c.26.1.1 73912,73913 1im8A 244 3.31e+01 c.66.1.14 66212 2ewcA 126 3.34e+01 2f2mA 113 3.39e+01 1sqgA 429 3.39e+01 a.79.1.3,c.66.1.38 105912,105913 2f96A 224 3.41e+01 2hbtA 247 3.43e+01 2fikA 287 3.63e+01 1z83A 196 3.64e+01 1u5dA 108 3.65e+01 1no1A 126 3.68e+01 a.179.1.1 85913 1zkeA 83 3.80e+01 2a2pA 129 3.81e+01 1rfeA 162 3.83e+01 1gwuA 309 3.84e+01 a.93.1.1 83351 1sheA 103 3.85e+01 d.274.1.1 105551 1h3nA 878 3.86e+01 a.27.1.1,b.51.1.1,c.26.1.1 76641,76642,76643 1m6jA 261 3.88e+01 c.1.1.1 78693 1dfwA 25 3.88e+01 j.35.1.1 46255 1mvlA 209 3.91e+01 c.34.1.1 85146 1cfr 285 3.93e+01 1cfr c.52.1.7 33312 1ykhA 108 3.93e+01 2c2nA 339 4.03e+01 1vls 146 4.05e+01 1vls a.24.2.1 16532 1um5L 219 4.05e+01 2bfdA 400 4.06e+01 1eyhA 144 4.09e+01 1eduA a.118.9.1 19214 1alvA 173 4.14e+01 1alvA a.39.1.8 17370 1t6uA 117 4.16e+01 a.24.22.1 106584 1v73A 342 4.19e+01 1ab8A 220 4.22e+01 1azsA d.58.29.1 39414 1sq5A 308 4.22e+01 c.37.1.6 105882 1qh4A 380 4.23e+01 1qh4A a.83.1.1,d.128.1.2 18462,41197 1m3uA 264 4.25e+01 c.1.12.8 84784 1tqyB 415 4.26e+01 c.95.1.1,c.95.1.1 107247,107248 1h4vB 421 4.33e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1p8xA 344 4.38e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 1zboA 210 4.41e+01 2f8mA 244 4.42e+01 1dbwA 126 4.47e+01 1dbwA c.23.1.1 31095 2fupA 168 4.49e+01 2br9A 234 4.54e+01 1x6iA 91 4.57e+01 1thg 544 4.67e+01 1thg c.69.1.17 34763 1z6uA 150 4.67e+01 1h99A 224 4.93e+01 a.142.1.1,a.142.1.1 60814,60815 2f02A 323 4.96e+01 1n0xL 215 4.96e+01 b.1.1.1,b.1.1.2 91532,91533 1wjgA 137 5.04e+01 1yozA 116 5.05e+01 1mp8A 281 5.25e+01 d.144.1.7 91384 2fh1A 344 5.25e+01 2an3A 289 5.28e+01 1zbfA 142 5.40e+01 1fc3A 120 5.40e+01 1fc3A a.4.6.3 16237 1otsA 465 5.42e+01 f.20.1.1 87415 2esnA 310 5.51e+01 2db9A 149 5.61e+01 1sr2A 116 5.61e+01 1gdeA 389 5.66e+01 c.67.1.1 60456 1d2mA 665 5.72e+01 1d2mA c.37.1.19,c.37.1.19 32417,32418 2c5rA 67 5.73e+01 1gjjA 168 5.75e+01 a.140.1.1,a.140.1.1 83291,83292 1zin 217 5.75e+01 1zin c.37.1.1,g.41.2.1 31915,45178 1se7A 83 5.76e+01 1zwwA 256 5.77e+01 2fkzA 155 5.79e+01 2fx0A 201 5.80e+01 1rzsA 61 5.82e+01 a.35.1.2 105139 1bf5A 545 5.86e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 2c7pA 327 5.90e+01 1ln4A 104 5.96e+01 d.68.4.1 74043 2cygA 312 6.00e+01 1pn0A 665 6.02e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1hlvA 131 6.02e+01 a.4.1.7,a.4.1.7 65854,65855 1mjuL 219 6.08e+01 b.1.1.1,b.1.1.2 91304,91305 1t6cA 315 6.11e+01 c.55.1.8,c.55.1.8 106558,106559 1v54J 59 6.14e+01 f.23.4.1 100331 1kcvL 214 6.17e+01 b.1.1.1,b.1.1.2 72317,72318 2db0A 253 6.18e+01 1rmg 422 6.20e+01 1rmg b.80.1.3 28029 1ux5A 411 6.20e+01 a.207.1.1 100144 1b4pA 217 6.32e+01 a.45.1.1,c.47.1.5 83158,83159 2g3kA 94 6.32e+01 1n8vA 112 6.38e+01 a.118.21.1 85457 1z98A 281 6.42e+01 2ag4A 164 6.42e+01 1vi0A 206 6.43e+01 a.4.1.9,a.121.1.1 100720,100721 1zhcA 76 6.43e+01 1y97A 238 6.43e+01 1xb4A 202 6.46e+01 1x74A 360 6.46e+01 1i2aA 219 6.62e+01 e.24.1.1 90660 1n1bA 549 6.62e+01 a.102.4.1,a.128.1.3 79799,79800 1ngkA 128 6.62e+01 a.1.1.1 85673 1hz4A 373 6.68e+01 a.118.8.2 65960 2afdA 88 6.70e+01 1dp7P 76 6.71e+01 1dp7P a.4.5.20 16159 1fpoA 171 6.71e+01 1fpoA a.2.3.1,a.23.1.1 15693,16487 1lvaA 258 6.74e+01 a.4.5.35,a.4.5.35,a.4.5.35,a.4.5.35 74276,74277,74278,74279 1c52 131 6.81e+01 1c52 a.3.1.1 15810 2cmxA 118 6.84e+01 2dg5A 366 6.84e+01 2bbrA 195 6.92e+01 1z3eB 73 6.98e+01 1rypB 250 7.03e+01 1rypB d.153.1.4 41933 1z6oA 212 7.08e+01 2acvA 463 7.12e+01 1aj2 282 7.15e+01 1aj2 c.1.21.1 29665 1qahA 136 7.16e+01 d.79.1.1 96338 2b4aA 138 7.16e+01 1q5zA 177 7.16e+01 a.196.1.1 95954 1rg9A 383 7.20e+01 d.130.1.1,d.130.1.1,d.130.1.1 97427,97428,97429 1kf6D 119 7.31e+01 f.21.2.2 72400 1q0gA 117 7.35e+01 a.24.22.1 104428 1y2kA 349 7.46e+01 1fmtA 314 7.56e+01 1fmtA b.46.1.1,c.65.1.1 25758,34174 2csgA 424 7.62e+01 2et1A 201 7.64e+01 2b1eA 564 7.64e+01 1h2sA 225 7.72e+01 f.13.1.1 76578 1ogiA 303 7.78e+01 b.43.4.2,c.25.1.1 92914,92915 1fi2A 201 7.78e+01 1fi2A b.82.1.2 59845 4hb1 108 7.80e+01 4hb1 k.8.1.1 46414 2pia 321 7.94e+01 2pia b.43.4.2,c.25.1.2,d.15.4.2 25663,31553,37704 1u04A 771 7.95e+01 b.34.14.1,c.55.3.10 107539,107540 1o8xA 146 8.05e+01 c.47.1.10 86681 1xqrA 296 8.05e+01 1zrn 232 8.08e+01 1qq5A c.108.1.1 43323 1vjkA 98 8.11e+01 d.15.3.1 108631 1dp4A 435 8.15e+01 1dp4A c.93.1.1 35710 1zc6A 305 8.19e+01 1wqwA 235 8.20e+01 1m1nB 522 8.21e+01 c.92.2.3 78418 1sra 151 8.23e+01 1sra a.39.1.3 17190 2btvA 901 8.29e+01 2btvA e.28.1.1 43376 1x1nA 524 8.29e+01 1x4tA 92 8.38e+01 1l9lA 74 8.41e+01 a.64.1.1 77827 1fg7A 356 8.43e+01 1gewA c.67.1.1 59819 2ddfA 257 8.49e+01 1b06A 210 8.59e+01 1avmA a.2.11.1,d.44.1.1 15740,38737 1bquA 215 8.63e+01 1bquA b.1.2.1,b.1.2.1 22066,22067 2ew8A 249 8.71e+01 2bmwA 304 8.79e+01 1u9iA 519 8.82e+01 2tct 207 8.89e+01 2tct a.4.1.9,a.121.1.1 16063,19240 1fn9A 365 8.92e+01 1fn9A d.196.1.1 59894 1n1fA 159 8.92e+01 a.26.1.3 79803 1j3mA 129 8.94e+01 d.129.7.1 103836 1n1jA 93 8.99e+01 a.22.1.3 79813