# List of top-scoring protein chains for t06-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2bc4A 211 1.60e-01 1m6jA 261 2.65e-01 c.1.1.1 78693 1jpaA 312 4.09e-01 d.144.1.7 67011 1yduA 170 1.25e+00 1bf5A 545 2.39e+00 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1dzlA 505 2.39e+00 1dzlA b.121.6.1 23586 1m0dA 138 2.83e+00 c.52.1.17 74354 1ngkA 128 3.45e+00 a.1.1.1 85673 1guxA 218 3.76e+00 1guxA a.74.1.3 18388 2bkaA 242 4.16e+00 2fmcA 82 4.19e+00 1llmC 88 4.64e+00 g.37.1.1,g.37.1.1 91059,91060 2ar0A 541 4.99e+00 1wazA 46 5.46e+00 1gnkA 112 5.72e+00 2pii d.58.5.1 39073 1jb0I 38 7.74e+00 1jb0I f.23.17.1 62826 1ewsA 32 8.13e+00 1ewsA g.9.1.1 59534 2gpzA 111 9.14e+00 2gw8A 114 9.45e+00 1xeaA 323 9.84e+00 c.2.1.3,d.81.1.5 109572,109573 1jhgA 101 9.91e+00 1jhgA a.4.12.1 19009 1sszA 34 1.01e+01 j.35.1.1 105999 2fl4A 149 1.05e+01 1x6iA 91 1.15e+01 2furA 209 1.18e+01 1clvI 32 1.22e+01 1qfdA g.3.2.1 44075 1snnA 227 1.23e+01 d.115.1.2 105821 1hynP 379 1.31e+01 1hynP d.112.1.2 61408 7aatA 401 1.42e+01 1ajsA c.67.1.1 34250 2aheA 267 1.44e+01 1m2kA 249 1.44e+01 c.31.1.5 84754 1f5vA 240 1.45e+01 1bkjA d.90.1.1 40255 1jmtB 28 1.53e+01 2a6cA 83 1.61e+01 1vbiA 344 1.68e+01 2b4nA 42 1.69e+01 2f2eA 146 1.77e+01 1dugA 234 1.77e+01 1b8xA a.45.1.1,c.47.1.5 17718,33012 1apyA 162 1.89e+01 1apyA d.153.1.5 42004 1bh9B 89 1.91e+01 1bh9B a.22.1.3 16485 1bquA 215 2.07e+01 1bquA b.1.2.1,b.1.2.1 22066,22067 2b7aA 293 2.07e+01 1nrgA 261 2.13e+01 b.45.1.1 80694 1d6gA 47 2.13e+01 1d6gA g.33.1.1 44976 2fi1A 190 2.17e+01 1vdiA 52 2.22e+01 2c0wA 50 2.29e+01 2cs3A 93 2.34e+01 1ugpA 203 2.34e+01 d.149.1.1 107831 1itbB 315 2.35e+01 1itbB b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1b35A 260 2.37e+01 1b35A b.121.4.1 23333 1x6vA 630 2.45e+01 1pzqA 60 2.56e+01 a.34.3.1 95466 1ecrA 309 2.56e+01 1ecrA e.2.1.1 42678 1ufyA 122 2.59e+01 d.79.1.2 88489 1nkzA 53 2.83e+01 f.3.1.1 80611 1w7lA 422 2.92e+01 c.67.1.1 109226 1ni4A 365 3.18e+01 c.36.1.11 85728 1n6zA 105 3.33e+01 d.263.1.1 85369 2auwA 170 3.37e+01 1bh0 29 3.45e+01 j.6.1.1 46102 1u6pA 56 3.50e+01 2if1 126 3.58e+01 2if1 d.64.1.1 39547 1gqeA 365 3.73e+01 e.38.1.1 70351 1w9zA 283 3.90e+01 1p0yA 444 3.90e+01 a.166.1.1,b.85.7.3 87654,87655 1pgtA 210 4.02e+01 1pgtA a.45.1.1,c.47.1.5 17515,32809 1gnwA 211 4.17e+01 1gnwA a.45.1.1,c.47.1.5 17727,33021 2a9iA 113 4.19e+01 1vqsA 116 4.23e+01 1ogqA 313 4.27e+01 c.10.2.8 86996 2a72A 146 4.28e+01 1oeyJ 107 4.29e+01 d.15.2.2 92804 1voqa 90 4.32e+01 1gvnB 287 4.35e+01 c.37.1.21 76354 2a2rA 210 4.56e+01 1z7gA 217 4.82e+01 1qsdA 106 4.84e+01 1qsdA a.7.5.1 16335 1q4uA 151 4.99e+01 d.38.1.5 95828 1w2qA 127 5.01e+01 1kf6D 119 5.12e+01 f.21.2.2 72400 1vaxA 287 5.18e+01 1kqhA 38 5.39e+01 g.3.6.2 68810 1zejA 293 5.44e+01 1yz7A 188 5.53e+01 1v63A 101 5.57e+01 a.21.1.1 108391 1tuaA 191 5.58e+01 d.51.1.1,d.51.1.1 107321,107322 2h0uA 217 5.58e+01 1thg 544 5.65e+01 1thg c.69.1.17 34763 2fy6A 143 5.67e+01 2cvdA 198 5.90e+01 1dfwA 25 5.97e+01 j.35.1.1 46255 1df7A 159 6.03e+01 3dfr c.71.1.1 34885 1jwiB 125 6.23e+01 d.169.1.1 67384 2gptA 523 6.23e+01 1v54M 46 6.26e+01 f.23.7.1 100334 1hdiA 413 6.35e+01 16pk c.86.1.1 60964 2arcA 164 6.36e+01 2arcA b.82.4.1 28148 1w53A 84 6.39e+01 a.186.1.2 109175 3fapB 94 6.44e+01 1nsgB a.24.7.1 16612 2bapC 56 6.44e+01 1qgtA 149 6.65e+01 1qgtA a.62.1.1 18135 1q9uA 130 6.71e+01 d.129.7.1 96314 2bpa2 175 6.71e+01 2bpa2 1lghA 56 6.79e+01 1lghA f.3.1.1 43733 1k8kF 168 6.84e+01 d.198.2.1 68312 1ux8A 132 6.93e+01 1xg8A 111 6.95e+01 1kq6A 141 7.02e+01 d.189.1.1 91020 2a50A 73 7.15e+01 1vqoI 162 7.17e+01 1jmuA 41 7.17e+01 e.35.1.1 66891 1z0wA 207 7.29e+01 1pba 81 7.36e+01 1pytA d.58.3.1 39067 2h21A 440 7.36e+01 1lv3A 68 7.48e+01 g.39.1.9 78231 1za0A 275 7.49e+01 1iyhA 198 7.59e+01 a.45.1.1,c.47.1.5 83790,83791 1tuoA 464 7.59e+01 2bl0A 63 7.60e+01 1uqvA 85 7.64e+01 a.60.1.2 99798 1ttzA 87 7.69e+01 c.47.1.1 107309 1vjkA 98 7.76e+01 d.15.3.1 108631 1n8vA 112 7.78e+01 a.118.21.1 85457 1dnlA 199 7.90e+01 1ci0A b.45.1.1 25753 2cy3 118 7.94e+01 3cyr a.138.1.1 19649 2f8xM 63 7.99e+01 1tzpA 255 8.03e+01 d.65.1.3 107520 1v54C 261 8.04e+01 f.25.1.1 100324 2ag4A 164 8.06e+01 1lbkA 208 8.20e+01 a.45.1.1,c.47.1.5 73809,73810 2cfxA 144 8.31e+01 2db0A 253 8.33e+01 2cglA 489 8.36e+01 2arzA 247 8.53e+01 2fsqA 243 8.53e+01 1ycsB 239 8.54e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 1iieA 75 8.62e+01 1iieA a.109.1.1 19039 2gsfA 373 8.63e+01 1sr9A 644 8.86e+01 a.5.7.1,c.1.10.5,d.270.1.1 105960,105961,105962