Best Alignments for T0352

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1ihp/T0352-1ihp-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ihp/T0352-1ihp-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.7445e+006.99e-03 1ihp c.60.1.2
1jpaA/T0352-1jpaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1jpaA/T0352-1jpaA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.7750e+009.35e-04 d.144.1.7
1tbmA/T0352-1tbmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1tbmA/T0352-1tbmA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.3709e+001.31e-04 a.211.1.2
1sz2A/T0352-1sz2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1sz2A/T0352-1sz2A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.8094e+002.67e-02
1q18A/T0352-1q18A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1q18A/T0352-1q18A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 9.6187e+007.43e-02 c.55.1.7
c.55.1.7
1myo/T0352-1myo-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1myo/T0352-1myo-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.0700e+013.65e-01 2myo d.211.1.1
6gsvA/T0352-6gsvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 6gsvA/T0352-6gsvA-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4306e+012.01e-03 1b8xA a.45.1.1
c.47.1.5
1vj5A/T0352-1vj5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1vj5A/T0352-1vj5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4321e+011.14e-05 c.108.1.2
c.69.1.11
1zd3A/T0352-1zd3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1zd3A/T0352-1zd3A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4926e+014.29e-06
1xw5A/T0352-1xw5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xw5A/T0352-1xw5A-t04-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.6325e+018.92e-08

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001