# TARGET T0352 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-ebghtl-stride-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 6 (1 EBGHTL ) # The input amino acid frequencies were determined from # alignment T0352.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 15.1991 # Pos AA E B G H T C 10N 1S 5N 5N 5N 5N 5N 5N 1 M 0.006 0.005 0.001 0.005 0.056 0.926 2 T 0.009 0.008 0.001 0.022 0.041 0.920 3 T 0.004 0.005 0.006 0.641 0.050 0.295 4 H 0.001 0.001 0.002 0.968 0.009 0.018 5 D 0.001 0.001 0.002 0.991 0.004 0.003 6 R 0.001 0.001 0.001 0.996 0.001 0.001 7 V 0.001 0.001 0.001 0.999 0.001 0.001 8 R 0.001 0.001 0.001 0.999 0.001 0.001 9 L 0.001 0.001 0.001 0.999 0.001 0.001 10 Q 0.001 0.001 0.001 0.999 0.001 0.001 11 L 0.001 0.001 0.001 0.999 0.001 0.001 12 Q 0.001 0.001 0.001 0.999 0.001 0.001 13 A 0.001 0.001 0.001 0.998 0.001 0.001 14 L 0.001 0.001 0.001 0.997 0.001 0.001 15 E 0.001 0.001 0.001 0.998 0.001 0.001 16 A 0.001 0.001 0.001 0.998 0.001 0.001 17 L 0.001 0.001 0.001 0.996 0.001 0.001 18 L 0.001 0.001 0.003 0.988 0.005 0.004 19 R 0.001 0.001 0.006 0.979 0.009 0.005 20 E 0.001 0.001 0.008 0.968 0.013 0.010 21 H 0.001 0.001 0.012 0.914 0.030 0.043 22 Q 0.005 0.003 0.035 0.534 0.114 0.309 23 H 0.027 0.012 0.076 0.260 0.207 0.418 24 W 0.069 0.021 0.103 0.257 0.279 0.271 25 R 0.079 0.021 0.072 0.238 0.355 0.235 26 N 0.046 0.016 0.050 0.130 0.444 0.314 27 D 0.024 0.013 0.025 0.035 0.451 0.452 28 E 0.015 0.014 0.008 0.013 0.298 0.653 29 P 0.009 0.019 0.007 0.015 0.200 0.750 30 Q 0.008 0.027 0.015 0.043 0.246 0.661 31 P 0.001 0.002 0.442 0.386 0.125 0.044 32 H 0.002 0.001 0.539 0.349 0.087 0.022 33 Q 0.003 0.002 0.603 0.287 0.084 0.020 34 F 0.013 0.019 0.162 0.509 0.151 0.146 35 N 0.016 0.015 0.062 0.289 0.274 0.344 36 S 0.013 0.011 0.010 0.050 0.361 0.554 37 T 0.029 0.010 0.009 0.033 0.346 0.573 38 Q 0.051 0.010 0.013 0.009 0.360 0.557 39 P 0.134 0.013 0.047 0.016 0.338 0.453 40 F 0.625 0.021 0.039 0.027 0.121 0.167 41 F 0.849 0.011 0.010 0.028 0.045 0.057 42 M 0.784 0.017 0.008 0.046 0.068 0.077 43 D 0.533 0.016 0.011 0.066 0.186 0.189 44 T 0.225 0.019 0.018 0.117 0.270 0.351 45 M 0.078 0.015 0.018 0.098 0.294 0.497 46 E 0.058 0.015 0.027 0.195 0.168 0.538 47 P 0.012 0.007 0.057 0.809 0.058 0.057 48 L 0.029 0.008 0.099 0.698 0.096 0.070 49 E 0.015 0.003 0.065 0.821 0.063 0.032 50 W 0.015 0.003 0.046 0.873 0.041 0.022 51 L 0.007 0.002 0.025 0.919 0.029 0.019 52 Q 0.003 0.001 0.019 0.957 0.012 0.009 53 W 0.003 0.001 0.012 0.973 0.008 0.003 54 V 0.004 0.001 0.013 0.976 0.005 0.002 55 L 0.004 0.001 0.014 0.968 0.007 0.006 56 I 0.006 0.002 0.029 0.870 0.045 0.049 57 P 0.002 0.001 0.042 0.892 0.042 0.020 58 R 0.002 0.001 0.057 0.874 0.039 0.026 59 M 0.001 0.001 0.038 0.944 0.010 0.008 60 H 0.001 0.001 0.027 0.962 0.006 0.004 61 D 0.001 0.001 0.017 0.970 0.007 0.005 62 L 0.001 0.001 0.016 0.965 0.010 0.007 63 L 0.001 0.001 0.019 0.947 0.020 0.013 64 D 0.001 0.001 0.029 0.897 0.046 0.025 65 N 0.002 0.002 0.031 0.799 0.091 0.076 66 K 0.002 0.005 0.028 0.182 0.224 0.558 67 Q 0.004 0.006 0.006 0.007 0.232 0.746 68 P 0.006 0.010 0.013 0.006 0.188 0.777 69 L 0.009 0.023 0.010 0.004 0.286 0.668 70 P 0.007 0.012 0.046 0.010 0.573 0.351 71 G 0.008 0.004 0.137 0.021 0.559 0.270 72 A 0.052 0.013 0.232 0.042 0.508 0.154 73 F 0.159 0.025 0.150 0.085 0.369 0.212 74 A 0.264 0.047 0.074 0.149 0.150 0.315 75 V 0.258 0.035 0.049 0.269 0.101 0.288 76 A 0.181 0.011 0.027 0.290 0.109 0.382 77 P 0.067 0.003 0.049 0.707 0.074 0.100 78 Y 0.053 0.005 0.049 0.786 0.062 0.045 79 Y 0.028 0.003 0.026 0.906 0.024 0.012 80 E 0.030 0.002 0.040 0.893 0.026 0.010 81 M 0.010 0.001 0.025 0.943 0.015 0.005 82 A 0.006 0.001 0.018 0.950 0.015 0.010 83 L 0.004 0.003 0.016 0.904 0.036 0.037 84 A 0.004 0.002 0.035 0.778 0.111 0.071 85 T 0.003 0.004 0.026 0.556 0.208 0.203 86 D 0.003 0.005 0.020 0.269 0.253 0.450 87 H 0.003 0.006 0.019 0.207 0.326 0.439 88 P 0.002 0.003 0.047 0.477 0.221 0.249 89 Q 0.002 0.003 0.046 0.796 0.080 0.073 90 R 0.001 0.001 0.008 0.964 0.012 0.014 91 A 0.001 0.001 0.003 0.988 0.004 0.004 92 L 0.001 0.001 0.002 0.993 0.002 0.002 93 I 0.001 0.001 0.002 0.993 0.002 0.001 94 L 0.001 0.001 0.002 0.994 0.002 0.001 95 A 0.001 0.001 0.003 0.993 0.002 0.001 96 E 0.001 0.001 0.004 0.991 0.002 0.003 97 L 0.001 0.001 0.005 0.987 0.004 0.004 98 E 0.001 0.001 0.006 0.982 0.006 0.005 99 K 0.001 0.001 0.005 0.980 0.006 0.009 100 L 0.001 0.001 0.007 0.968 0.008 0.015 101 D 0.001 0.001 0.017 0.960 0.011 0.011 102 A 0.001 0.001 0.029 0.946 0.015 0.009 103 L 0.001 0.001 0.015 0.951 0.015 0.016 104 F 0.002 0.002 0.015 0.917 0.033 0.032 105 A 0.002 0.002 0.028 0.768 0.107 0.093 106 D 0.004 0.003 0.056 0.330 0.333 0.274 107 D 0.004 0.004 0.052 0.115 0.446 0.379 108 A 0.006 0.009 0.030 0.070 0.321 0.564 109 S 0.007 0.004 0.003 0.017 0.124 0.844