# TARGET T0352 # Using neural net t04-2621-IDGaaH13-3-13-7-13-9-13-11-str2-seeded.net # This is a 4-layer network, with # window units # 3 13 # 7 13 # 9 13 # 11 13 (1 str2 ) # The input amino acid frequencies were determined from # alignment T0352.t04-thin90.a2m.gz # with weighted counts, using HenikoffWeight(1.3 bits/column, 1) # The weighting was determined by the posterior distribution # after regularizing with /projects/compbio/lib/recode3.20comp. # Counts were regularized to probabilities using # /projects/compbio/lib/recode3.20comp # Total sequence weight for alignment was 15.1991 # Pos AA A B C E G H M P Q S T Y Z 10N 1S 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 5N 1 M 0.001 0.018 0.833 0.001 0.002 0.015 0.001 0.001 0.002 0.092 0.016 0.011 0.010 2 T 0.001 0.019 0.891 0.001 0.002 0.015 0.001 0.001 0.001 0.049 0.013 0.002 0.008 3 T 0.001 0.012 0.500 0.001 0.023 0.218 0.001 0.001 0.001 0.144 0.096 0.003 0.004 4 H 0.001 0.001 0.107 0.001 0.020 0.744 0.001 0.001 0.001 0.051 0.073 0.001 0.002 5 D 0.001 0.001 0.014 0.001 0.006 0.955 0.001 0.001 0.001 0.012 0.012 0.001 0.001 6 R 0.001 0.001 0.012 0.001 0.003 0.976 0.001 0.001 0.001 0.002 0.004 0.001 0.001 7 V 0.001 0.001 0.006 0.001 0.001 0.988 0.001 0.001 0.001 0.002 0.002 0.001 0.001 8 R 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.001 0.001 0.001 9 L 0.001 0.001 0.001 0.001 0.001 0.996 0.001 0.001 0.001 0.001 0.002 0.001 0.001 10 Q 0.001 0.001 0.002 0.001 0.001 0.994 0.001 0.001 0.001 0.001 0.004 0.001 0.001 11 L 0.001 0.001 0.002 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.002 0.001 0.001 12 Q 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.001 0.001 0.001 13 A 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 14 L 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 15 E 0.001 0.001 0.001 0.001 0.001 0.999 0.001 0.001 0.001 0.001 0.001 0.001 0.001 16 A 0.001 0.001 0.001 0.001 0.001 0.998 0.001 0.001 0.001 0.001 0.002 0.001 0.001 17 L 0.001 0.001 0.001 0.001 0.001 0.995 0.001 0.001 0.001 0.001 0.004 0.001 0.001 18 L 0.001 0.001 0.001 0.001 0.001 0.982 0.001 0.001 0.001 0.001 0.015 0.001 0.001 19 R 0.001 0.001 0.004 0.001 0.005 0.940 0.001 0.001 0.001 0.003 0.047 0.001 0.001 20 E 0.001 0.001 0.011 0.001 0.009 0.865 0.001 0.001 0.001 0.004 0.110 0.001 0.001 21 H 0.001 0.002 0.055 0.001 0.022 0.658 0.001 0.001 0.001 0.031 0.233 0.001 0.001 22 Q 0.001 0.004 0.073 0.001 0.049 0.359 0.001 0.001 0.001 0.047 0.464 0.001 0.001 23 H 0.001 0.015 0.159 0.002 0.102 0.282 0.001 0.001 0.007 0.133 0.288 0.005 0.008 24 W 0.001 0.025 0.181 0.002 0.132 0.233 0.001 0.001 0.017 0.131 0.259 0.006 0.011 25 R 0.001 0.026 0.254 0.004 0.063 0.157 0.002 0.002 0.016 0.193 0.250 0.014 0.018 26 N 0.001 0.021 0.428 0.005 0.040 0.081 0.001 0.001 0.014 0.235 0.148 0.005 0.020 27 D 0.001 0.011 0.487 0.002 0.009 0.016 0.001 0.001 0.011 0.427 0.027 0.005 0.005 28 E 0.001 0.011 0.793 0.001 0.002 0.003 0.001 0.001 0.004 0.156 0.024 0.002 0.005 29 P 0.001 0.037 0.855 0.001 0.003 0.003 0.001 0.001 0.002 0.065 0.031 0.001 0.003 30 Q 0.001 0.028 0.889 0.001 0.004 0.003 0.001 0.001 0.001 0.067 0.005 0.002 0.002 31 P 0.001 0.002 0.042 0.001 0.572 0.253 0.001 0.001 0.001 0.015 0.112 0.001 0.003 32 H 0.001 0.004 0.024 0.002 0.596 0.221 0.001 0.001 0.001 0.024 0.124 0.003 0.002 33 Q 0.001 0.005 0.023 0.001 0.675 0.201 0.001 0.001 0.002 0.009 0.079 0.002 0.004 34 F 0.003 0.037 0.199 0.002 0.193 0.366 0.001 0.001 0.007 0.049 0.110 0.007 0.024 35 N 0.003 0.018 0.139 0.017 0.135 0.206 0.001 0.002 0.006 0.078 0.376 0.010 0.009 36 S 0.001 0.006 0.173 0.003 0.072 0.099 0.001 0.001 0.007 0.276 0.345 0.003 0.013 37 T 0.001 0.019 0.327 0.003 0.050 0.076 0.001 0.001 0.009 0.341 0.145 0.008 0.019 38 Q 0.001 0.029 0.488 0.002 0.011 0.032 0.001 0.001 0.027 0.351 0.031 0.017 0.009 39 P 0.001 0.022 0.576 0.010 0.062 0.054 0.001 0.003 0.029 0.058 0.157 0.003 0.025 40 F 0.007 0.070 0.256 0.011 0.118 0.065 0.008 0.017 0.058 0.140 0.216 0.016 0.019 41 F 0.015 0.050 0.230 0.005 0.157 0.084 0.010 0.017 0.080 0.113 0.185 0.023 0.031 42 M 0.014 0.037 0.343 0.006 0.117 0.091 0.008 0.015 0.048 0.097 0.167 0.018 0.038 43 D 0.005 0.023 0.257 0.005 0.065 0.068 0.003 0.004 0.027 0.240 0.260 0.021 0.021 44 T 0.002 0.017 0.304 0.005 0.027 0.039 0.001 0.001 0.019 0.342 0.216 0.003 0.023 45 M 0.001 0.032 0.383 0.001 0.006 0.065 0.001 0.001 0.008 0.448 0.033 0.016 0.006 46 E 0.001 0.016 0.621 0.001 0.006 0.165 0.001 0.001 0.003 0.147 0.029 0.002 0.009 47 P 0.001 0.004 0.077 0.001 0.034 0.801 0.001 0.001 0.001 0.019 0.060 0.001 0.002 48 L 0.001 0.001 0.016 0.001 0.014 0.940 0.001 0.001 0.001 0.008 0.021 0.001 0.001 49 E 0.001 0.001 0.008 0.001 0.009 0.961 0.001 0.001 0.001 0.007 0.013 0.001 0.001 50 W 0.001 0.001 0.006 0.001 0.005 0.965 0.001 0.001 0.001 0.003 0.018 0.001 0.001 51 L 0.002 0.001 0.009 0.001 0.004 0.961 0.001 0.001 0.001 0.004 0.017 0.001 0.001 52 Q 0.001 0.001 0.007 0.001 0.003 0.973 0.001 0.001 0.001 0.004 0.008 0.001 0.001 53 W 0.001 0.001 0.007 0.001 0.002 0.973 0.001 0.001 0.001 0.004 0.010 0.001 0.001 54 V 0.004 0.001 0.007 0.001 0.003 0.953 0.001 0.001 0.001 0.004 0.021 0.002 0.002 55 L 0.005 0.002 0.020 0.001 0.003 0.919 0.002 0.001 0.004 0.005 0.032 0.002 0.006 56 I 0.001 0.001 0.035 0.001 0.005 0.919 0.001 0.001 0.002 0.008 0.026 0.003 0.001 57 P 0.001 0.001 0.031 0.001 0.013 0.882 0.001 0.001 0.001 0.014 0.055 0.001 0.002 58 R 0.001 0.001 0.023 0.001 0.012 0.925 0.001 0.001 0.001 0.009 0.028 0.001 0.001 59 M 0.001 0.001 0.006 0.001 0.005 0.980 0.001 0.001 0.001 0.001 0.006 0.001 0.001 60 H 0.001 0.001 0.002 0.001 0.005 0.990 0.001 0.001 0.001 0.001 0.002 0.001 0.001 61 D 0.001 0.001 0.002 0.001 0.005 0.989 0.001 0.001 0.001 0.001 0.003 0.001 0.001 62 L 0.001 0.001 0.001 0.001 0.007 0.987 0.001 0.001 0.001 0.001 0.005 0.001 0.001 63 L 0.001 0.001 0.002 0.001 0.003 0.975 0.001 0.001 0.001 0.001 0.018 0.001 0.001 64 D 0.001 0.001 0.003 0.001 0.007 0.911 0.001 0.001 0.001 0.002 0.077 0.001 0.001 65 N 0.001 0.001 0.010 0.001 0.010 0.642 0.001 0.001 0.001 0.016 0.320 0.001 0.001 66 K 0.001 0.004 0.269 0.001 0.019 0.219 0.001 0.001 0.001 0.143 0.344 0.001 0.001 67 Q 0.001 0.009 0.613 0.001 0.004 0.013 0.001 0.001 0.001 0.326 0.031 0.001 0.001 68 P 0.001 0.023 0.657 0.002 0.013 0.013 0.001 0.001 0.003 0.152 0.132 0.001 0.004 69 L 0.001 0.034 0.516 0.002 0.013 0.010 0.001 0.001 0.003 0.374 0.041 0.005 0.002 70 P 0.001 0.019 0.525 0.003 0.058 0.036 0.001 0.001 0.004 0.150 0.197 0.001 0.007 71 G 0.001 0.010 0.258 0.002 0.135 0.075 0.001 0.001 0.004 0.170 0.336 0.004 0.004 72 A 0.004 0.012 0.276 0.004 0.183 0.170 0.001 0.002 0.010 0.137 0.172 0.007 0.021 73 F 0.014 0.021 0.275 0.003 0.162 0.213 0.006 0.004 0.026 0.083 0.114 0.039 0.041 74 A 0.026 0.052 0.267 0.004 0.053 0.253 0.011 0.007 0.043 0.059 0.108 0.049 0.069 75 V 0.018 0.035 0.258 0.004 0.032 0.359 0.006 0.005 0.029 0.087 0.076 0.032 0.061 76 A 0.002 0.004 0.143 0.002 0.011 0.728 0.001 0.001 0.009 0.055 0.024 0.011 0.010 77 P 0.001 0.001 0.017 0.001 0.005 0.952 0.001 0.001 0.001 0.007 0.014 0.001 0.002 78 Y 0.001 0.001 0.004 0.001 0.003 0.986 0.001 0.001 0.001 0.001 0.004 0.001 0.001 79 Y 0.001 0.001 0.003 0.001 0.002 0.992 0.001 0.001 0.001 0.001 0.001 0.001 0.001 80 E 0.001 0.001 0.002 0.001 0.002 0.991 0.001 0.001 0.001 0.001 0.002 0.001 0.001 81 M 0.001 0.001 0.002 0.001 0.005 0.978 0.001 0.001 0.001 0.002 0.010 0.001 0.001 82 A 0.001 0.001 0.004 0.001 0.009 0.943 0.001 0.001 0.001 0.003 0.039 0.001 0.001 83 L 0.001 0.002 0.013 0.001 0.012 0.865 0.001 0.001 0.001 0.006 0.097 0.001 0.001 84 A 0.001 0.004 0.030 0.001 0.036 0.632 0.001 0.001 0.001 0.015 0.281 0.001 0.001 85 T 0.001 0.002 0.072 0.001 0.034 0.304 0.001 0.001 0.001 0.051 0.535 0.001 0.001 86 D 0.001 0.004 0.249 0.001 0.032 0.225 0.001 0.001 0.001 0.144 0.343 0.001 0.002 87 H 0.001 0.005 0.513 0.001 0.007 0.121 0.001 0.001 0.001 0.324 0.028 0.001 0.001 88 P 0.001 0.005 0.323 0.001 0.033 0.392 0.001 0.001 0.001 0.088 0.157 0.001 0.001 89 Q 0.001 0.005 0.078 0.001 0.079 0.680 0.001 0.001 0.001 0.042 0.113 0.001 0.001 90 R 0.001 0.001 0.030 0.001 0.033 0.902 0.001 0.001 0.001 0.014 0.018 0.001 0.001 91 A 0.001 0.001 0.010 0.001 0.010 0.965 0.001 0.001 0.001 0.005 0.008 0.001 0.001 92 L 0.001 0.001 0.011 0.001 0.009 0.958 0.001 0.001 0.002 0.004 0.012 0.001 0.001 93 I 0.001 0.001 0.008 0.001 0.003 0.973 0.001 0.001 0.001 0.003 0.010 0.001 0.001 94 L 0.001 0.001 0.003 0.001 0.001 0.990 0.001 0.001 0.001 0.001 0.003 0.001 0.001 95 A 0.001 0.001 0.003 0.001 0.002 0.987 0.001 0.001 0.001 0.002 0.005 0.001 0.001 96 E 0.001 0.001 0.006 0.001 0.002 0.985 0.001 0.001 0.001 0.001 0.006 0.001 0.001 97 L 0.001 0.001 0.005 0.001 0.002 0.988 0.001 0.001 0.001 0.002 0.004 0.001 0.001 98 E 0.001 0.001 0.001 0.001 0.001 0.993 0.001 0.001 0.001 0.001 0.005 0.001 0.001 99 K 0.001 0.001 0.001 0.001 0.001 0.991 0.001 0.001 0.001 0.001 0.008 0.001 0.001 100 L 0.001 0.001 0.001 0.001 0.002 0.991 0.001 0.001 0.001 0.001 0.004 0.001 0.001 101 D 0.001 0.001 0.002 0.001 0.008 0.982 0.001 0.001 0.001 0.002 0.006 0.001 0.001 102 A 0.001 0.001 0.001 0.001 0.010 0.965 0.001 0.001 0.001 0.001 0.021 0.001 0.001 103 L 0.001 0.001 0.001 0.001 0.008 0.919 0.001 0.001 0.001 0.001 0.070 0.001 0.001 104 F 0.001 0.002 0.021 0.001 0.012 0.718 0.001 0.001 0.001 0.019 0.227 0.001 0.001 105 A 0.001 0.006 0.132 0.001 0.058 0.453 0.001 0.001 0.001 0.058 0.291 0.001 0.001 106 D 0.001 0.005 0.236 0.001 0.079 0.245 0.001 0.001 0.001 0.160 0.273 0.001 0.001 107 D 0.001 0.005 0.427 0.001 0.079 0.127 0.001 0.001 0.001 0.144 0.213 0.001 0.002 108 A 0.001 0.009 0.599 0.001 0.046 0.071 0.001 0.001 0.001 0.146 0.124 0.001 0.002 109 S 0.001 0.005 0.842 0.001 0.010 0.021 0.001 0.001 0.001 0.099 0.020 0.001 0.001