# List of top-scoring protein chains for T0352.t04-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1m6jA 261 3.55e+00 c.1.1.1 78693 1ad3A 452 4.63e+00 1ad3A c.82.1.1 35335 1w36C 1122 7.39e+00 1myo 118 1.07e+01 2myo d.211.1.1 19174 1eptA 43 1.09e+01 5ptp b.47.1.2 25966 1zejA 293 1.78e+01 1jb0I 38 1.90e+01 1jb0I f.23.17.1 62826 2fpoA 202 2.04e+01 2fy6A 143 2.38e+01 2etrA 415 2.55e+01 1trnA 224 2.56e+01 5ptp b.47.1.2 26000 1a1hA 90 2.61e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45004,45005,45006 1jk2A 90 2.69e+01 g.37.1.1,g.37.1.1,g.37.1.1 66787,66788,66789 2cigA 159 2.69e+01 1p47A 87 2.73e+01 g.37.1.1,g.37.1.1,g.37.1.1 87758,87759,87760 1a1iA 90 2.74e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1zaaC 87 2.76e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1a1gA 90 2.78e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45010,45011,45012 1aayA 90 2.80e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1bj8 109 2.87e+01 1bquA b.1.2.1 22070 1df7A 159 2.87e+01 3dfr c.71.1.1 34885 2fmcA 82 3.09e+01 1w1oA 534 3.25e+01 d.58.32.4,d.145.1.1 109071,109072 1trrA 107 3.29e+01 1jhgA a.4.12.1 19017 1bp1 456 3.35e+01 1bp1 d.83.1.1,d.83.1.1 40026,40027 1ewfA 456 3.37e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 1h4wA 224 3.43e+01 b.47.1.2 65622 1ihp 438 3.49e+01 1ihp c.60.1.2 33993 2fk0A 334 3.49e+01 1g2dC 90 3.52e+01 k.12.1.1 60220 2g6tA 306 3.62e+01 2fiyA 309 3.70e+01 2f2uA 402 3.80e+01 2ftcG 145 3.83e+01 1yzxA 226 4.13e+01 1wkvA 389 4.14e+01 2mev2 256 4.29e+01 1aym2 1aksA 125 4.38e+01 5ptp b.47.1.2 25969 2acxA 576 4.48e+01 2cpyA 114 4.52e+01 1v9nA 360 4.74e+01 1ogqA 313 4.80e+01 c.10.2.8 86996 1pvhA 201 4.84e+01 b.1.2.1,b.1.2.1 95165,95166 1w7lA 422 4.92e+01 c.67.1.1 109226 1x6iA 91 5.09e+01 1g2fC 90 5.10e+01 k.12.1.1 60222 1vqyA 116 5.11e+01 2abjA 366 5.15e+01 2fnqA 699 5.44e+01 1utmA 242 5.48e+01 b.47.1.2 99966 1sxeA 97 5.53e+01 a.60.1.1 106080 3wrp 108 5.63e+01 1jhgA a.4.12.1 19015 2wrpR 107 5.77e+01 1jhgA a.4.12.1 19010 1o4vA 183 5.80e+01 c.23.8.1 86628 1troA 108 6.04e+01 1jhgA a.4.12.1 19011 2a45G 57 6.05e+01 1d1pA 160 6.11e+01 1dg9A c.44.1.1 32646 1rcsA 105 6.23e+01 1jhgA a.4.12.1 19025 2stbE 222 6.27e+01 5ptp b.47.1.2 26006 1z6xA 180 6.28e+01 1jhgA 101 6.30e+01 1jhgA a.4.12.1 19009 2a10A 125 6.37e+01 1d1qA 161 6.43e+01 1dg9A c.44.1.1 32642 1d2aA 160 6.45e+01 1dg9A c.44.1.1 32644 1fmtA 314 6.49e+01 1fmtA b.46.1.1,c.65.1.1 25758,34174 1mbqA 220 6.56e+01 b.47.1.2 78920 1plc 99 6.87e+01 1plc b.6.1.1 22846 1bquA 215 6.88e+01 1bquA b.1.2.1,b.1.2.1 22066,22067 1hj8A 222 6.96e+01 b.47.1.2 65844 1p9mA 299 7.07e+01 b.1.2.1,b.1.2.1,b.1.2.1 87991,87992,87993 1m2jA 249 7.18e+01 c.31.1.5 84753 1i1rA 303 7.19e+01 1bquA b.1.2.1,b.1.2.1,b.1.2.1 61545,61546,61547 1pvgA 418 7.33e+01 d.14.1.3,d.122.1.2 95161,95162 1tqyB 415 7.39e+01 c.95.1.1,c.95.1.1 107247,107248 1ophB 243 7.45e+01 b.47.1.2 93405 1zzzA 237 7.47e+01 5ptp b.47.1.2 25892 1utnA 243 7.47e+01 b.47.1.2 99967 1uyrA 737 7.51e+01 c.14.1.4,c.14.1.4 100188,100189 1r4wA 226 7.52e+01 c.47.1.13 97050 1uyvA 737 7.53e+01 c.14.1.4,c.14.1.4 100204,100205 1bty 229 7.53e+01 5ptp b.47.1.2 25833 2bdeA 470 7.70e+01 1g3dA 228 7.73e+01 5ptp b.47.1.2 25920 1w2xA 758 7.74e+01 c.14.1.4,c.14.1.4 109134,109135 1iciA 256 7.76e+01 1iciA c.31.1.5 62266 1m2gA 249 7.77e+01 c.31.1.5 84750 1v2nT 223 7.79e+01 b.47.1.2 108290 1v2lT 223 7.82e+01 b.47.1.2 108288 1oowA 99 7.82e+01 b.6.1.1 93387 1xfjA 261 7.82e+01 d.194.1.2 109585 1v2oT 223 7.88e+01 b.47.1.2 108291 1v2wT 223 7.91e+01 b.47.1.2 108299 1m2hA 249 7.91e+01 c.31.1.5 84751 1v2sT 223 7.93e+01 b.47.1.2 108295 1v2rT 223 7.93e+01 b.47.1.2 108294 1v2qT 223 8.08e+01 b.47.1.2 108293 2tldE 220 8.10e+01 5ptp b.47.1.2 25881 1imuA 107 8.15e+01 d.204.1.1 66218 1od2A 805 8.17e+01 c.14.1.4,c.14.1.4 86821,86822 1jpaA 312 8.33e+01 d.144.1.7 67011 1thg 544 8.43e+01 1thg c.69.1.17 34763 1y59T 223 8.62e+01 1rkd 309 8.63e+01 1rkd c.72.1.1 34928 2fi5E 223 8.63e+01 1hj9A 223 8.68e+01 b.47.1.2 65845 1tawA 223 8.82e+01 5ptp b.47.1.2 25860