# List of top-scoring protein chains for t04-100-30-stride-ebghtl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tbmA 326 1.59e-01 a.211.1.2 106744 1q18A 332 1.80e-01 c.55.1.7,c.55.1.7 104470,104471 1sz2A 332 3.21e-01 1ihp 438 5.25e-01 1ihp c.60.1.2 33993 6gsvA 217 7.40e-01 1b8xA a.45.1.1,c.47.1.5 17633,32925 1xw5A 217 1.75e+00 2c4jA 218 1.81e+00 2ctoA 93 2.03e+00 1y3nA 490 2.10e+00 1zv1A 65 2.88e+00 2fiyA 309 3.03e+00 1y5iC 225 3.57e+00 1jhgA 101 3.94e+00 1jhgA a.4.12.1 19009 1b4pA 217 4.11e+00 a.45.1.1,c.47.1.5 83158,83159 1mzbA 136 4.61e+00 a.4.5.42 91497 1bd8 156 4.91e+00 1bd8 d.211.1.1 19157 1zboA 210 5.44e+00 1eemA 241 5.76e+00 1eemA a.45.1.1,c.47.1.5 17717,33011 1zejA 293 6.32e+00 1x1fA 149 6.41e+00 1qwoA 442 6.50e+00 c.60.1.2 104620 1jb0I 38 6.92e+00 1jb0I f.23.17.1 62826 2esnA 310 8.61e+00 2fu4A 83 9.33e+00 1qfxA 460 9.38e+00 1qfxA c.60.1.2 33994 1ufaA 520 9.58e+00 a.8.3.3,c.6.2.4 99329,99330 2iu5A 195 1.14e+01 1nd7A 374 1.15e+01 d.148.1.1 91817 2aheA 267 1.32e+01 1vj5A 555 1.33e+01 c.108.1.2,c.69.1.11 100799,100800 1sszA 34 1.34e+01 j.35.1.1 105999 1zd3A 555 1.34e+01 1jpaA 312 1.38e+01 d.144.1.7 67011 1sq5A 308 1.46e+01 c.37.1.6 105882 2ac3A 316 1.48e+01 1x6vA 630 1.65e+01 1ad3A 452 1.77e+01 1ad3A c.82.1.1 35335 1r4wA 226 1.78e+01 c.47.1.13 97050 1b0pA 1231 1.80e+01 c.36.1.8,c.36.1.12,c.48.1.3,c.64.1.1,d.58.1.5 31831,31832,33104,34157,39003 1o5hA 214 1.85e+01 a.191.1.1 92497 2gdjA 264 1.85e+01 1zkeA 83 1.87e+01 1kpsB 171 1.96e+01 a.118.12.1 68787 1rh9A 373 2.04e+01 1x74A 360 2.06e+01 1z2nX 324 2.20e+01 1x91A 153 2.33e+01 6mhtA 327 2.33e+01 6mhtA c.66.1.26 34226 1mzjA 339 2.40e+01 c.95.1.2,c.95.1.2 79700,79701 1w1oA 534 2.42e+01 d.58.32.4,d.145.1.1 109071,109072 1jakA 512 2.46e+01 c.1.8.6,d.92.2.1 66472,66473 1hp5A 512 2.47e+01 1hp4A c.1.8.6,d.92.2.1 61113,61114 1n1jA 93 2.51e+01 a.22.1.3 79813 1n2fA 142 2.57e+01 d.227.1.1 79853 2gsvA 80 2.62e+01 1xfsA 178 2.66e+01 d.129.3.5 109589 1z2uA 150 2.68e+01 1qwyA 291 2.78e+01 b.84.3.2 96509 1m2kA 249 2.83e+01 c.31.1.5 84754 1jk8B 190 2.87e+01 1iakB b.1.1.2,d.19.1.1 63147,63148 1wjgA 137 2.88e+01 1wovA 250 2.91e+01 2ac5A 316 2.97e+01 1br1B 150 3.01e+01 1wdcC a.39.1.5 17309 2fqmA 75 3.11e+01 1yzxA 226 3.12e+01 1i9gA 280 3.18e+01 c.66.1.13 62090 1t4gA 322 3.20e+01 a.60.4.1,c.37.1.11 106418,106419 1repC 251 3.31e+01 1repC a.4.5.10,a.4.5.10 16125,16126 2fpmA 322 3.32e+01 1zq9A 285 3.36e+01 1m98A 317 3.49e+01 a.175.1.1,d.17.4.6 78866,78867 1ohfA 644 3.63e+01 b.121.4.8 93014 1f7uA 607 3.64e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1whrA 124 3.70e+01 1x23A 155 3.83e+01 1v88A 130 3.85e+01 b.55.1.1 108423 1q16C 225 3.86e+01 f.21.3.1 95549 2c7pA 327 3.95e+01 2a6hC 1119 3.97e+01 1ytaA 180 4.07e+01 1yy7A 213 4.08e+01 1v4aA 440 4.15e+01 a.24.16.4,d.218.1.9 108350,108351 1iw7C 1119 4.25e+01 e.29.1.1 71474 2fmcA 82 4.30e+01 2a9iA 113 4.36e+01 2b7aA 293 4.36e+01 1esiA 262 4.38e+01 1skf e.3.1.1 42682 1es5A 262 4.52e+01 1skf e.3.1.1 42679 1gwuA 309 4.54e+01 a.93.1.1 83351 2g6tA 306 4.59e+01 1i7dA 659 4.66e+01 1d6mA e.10.1.1 61886 1no1A 126 4.70e+01 a.179.1.1 85913 1fsu 492 4.76e+01 1auk c.76.1.2 35032 1cfzA 162 4.87e+01 1cfzA c.56.1.1 33754 1y5iA 1246 4.92e+01 1jmtB 28 4.95e+01 1m6kA 251 4.96e+01 e.3.1.1 78695 1q16A 1247 4.96e+01 b.52.2.2,c.81.1.1 95546,95547 1h6zA 913 4.99e+01 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1t01A 255 5.16e+01 a.24.9.1,a.24.9.1 106188,106189 7atjA 308 5.28e+01 1bgp a.93.1.1 18673 1ycsB 239 5.34e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 1gjwA 637 5.34e+01 b.71.1.1,c.1.8.1 60582,60583 1b8aA 438 5.44e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 1m3uA 264 5.45e+01 c.1.12.8 84784 1ni3A 392 5.48e+01 c.37.1.8,d.15.10.2 80531,80532 1xqsA 280 5.49e+01 1ut7A 171 5.50e+01 b.143.1.1 99906 1pgjA 478 5.52e+01 2pgd a.100.1.1,c.2.1.6 18783,30195 2aplA 157 5.54e+01 1k4tA 592 5.61e+01 a.2.8.1,d.163.1.2,e.15.1.1 77263,77264,77265 2furA 209 5.62e+01 1qd9A 124 5.64e+01 1qu9A d.79.1.1 39758 1cfr 285 5.91e+01 1cfr c.52.1.7 33312 1ez0A 510 5.96e+01 1eyyA c.82.1.1 35385 1s5lX 50 6.05e+01 1t92A 116 6.14e+01 1v54H 85 6.15e+01 a.51.1.1 100329 1esmA 316 6.15e+01 1esmA c.37.1.6 31953 1mp8A 281 6.20e+01 d.144.1.7 91384 1g7oA 215 6.28e+01 1g7oA a.45.1.1,c.47.1.5 60332,60333 1w36C 1122 6.28e+01 1zrzA 364 6.35e+01 1w07A 659 6.42e+01 2btvA 901 6.59e+01 2btvA e.28.1.1 43376 1jbbA 153 6.61e+01 1u9aA d.20.1.1 62842 2bnfB 241 6.71e+01 1g2fC 90 6.89e+01 k.12.1.1 60222 1axdA 209 6.95e+01 1gnwA a.45.1.1,c.47.1.5 17730,33024 2bolA 314 7.05e+01 1gewA 356 7.07e+01 1gewA c.67.1.1 60470 1jatA 155 7.10e+01 1u9aA d.20.1.1 62818 2gw6A 123 7.13e+01 2adoA 196 7.16e+01 1fhuA 320 7.25e+01 1fhuA c.1.11.2,d.54.1.1 29234,38878 2afwA 329 7.33e+01 1xrsA 516 7.40e+01 1rxqA 178 7.41e+01 a.213.1.1 105118 1zvzA 279 7.48e+01 1zxkA 98 7.51e+01 1ssqA 267 7.52e+01 b.81.1.6 105993 2etxA 209 7.53e+01 1pn0A 665 7.53e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 1jgjA 217 7.63e+01 1c3wA f.13.1.1 62952 1xgkA 352 7.65e+01 1kblA 873 7.70e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1uk5A 111 7.76e+01 a.7.7.1 99487 1jae 471 7.78e+01 1smd b.71.1.1,c.1.8.1 27773,28760 1im8A 244 7.80e+01 c.66.1.14 66212 4crxA 322 7.85e+01 4crxA a.60.9.1,d.163.1.1 18095,42155 1jhdA 396 7.95e+01 b.122.1.3,c.26.1.5 66712,66713 1v93A 296 7.99e+01 c.1.23.1 100532 1xqrA 296 8.00e+01 2b9sB 62 8.05e+01 1f44A 324 8.14e+01 a.60.9.1,d.163.1.1 64982,64983 1p8xA 344 8.16e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 1gweA 503 8.22e+01 e.5.1.1 70667 2fkzA 155 8.32e+01 1zbfA 142 8.39e+01 1hbzA 498 8.45e+01 1cf9A e.5.1.1 60937 1r8iA 213 8.57e+01 a.8.7.1 97239 1h2vC 771 8.58e+01 a.118.1.14,a.118.1.14,a.118.1.14 76592,76593,76594 1ewfA 456 8.61e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 1oeyJ 107 8.69e+01 d.15.2.2 92804 2occH 85 8.81e+01 2occH a.51.1.1 17796 2givA 295 8.85e+01 2ewcA 126 8.88e+01 2b3oA 532 8.91e+01 1v1rA 400 8.91e+01 c.36.1.11 108272 1a1iA 90 8.93e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1h2sA 225 8.99e+01 f.13.1.1 76578