# List of top-scoring protein chains for t04-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1m6jA 261 1.01e+00 c.1.1.1 78693 1jpaA 312 1.23e+00 d.144.1.7 67011 1iuhA 198 1.25e+00 d.61.1.2 83711 1m2kA 249 1.53e+00 c.31.1.5 84754 1h6zA 913 4.00e+00 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1ewqA 765 4.62e+00 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1jsxA 207 4.84e+00 c.66.1.20 71846 1sr2A 116 6.23e+00 2furA 209 7.34e+00 1w36C 1122 7.48e+00 1w1oA 534 8.13e+00 d.58.32.4,d.145.1.1 109071,109072 1ooeA 236 8.35e+00 c.2.1.2 87196 1n2fA 142 9.87e+00 d.227.1.1 79853 2gsfA 373 1.01e+01 1t6uA 117 1.01e+01 a.24.22.1 106584 1q0gA 117 1.08e+01 a.24.22.1 104428 1kblA 873 1.08e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 2fy6A 143 1.15e+01 2fqmA 75 1.23e+01 1pzqA 60 1.34e+01 a.34.3.1 95466 1ogqA 313 1.45e+01 c.10.2.8 86996 2fmcA 82 1.46e+01 1gqeA 365 1.65e+01 e.38.1.1 70351 1tuaA 191 1.66e+01 d.51.1.1,d.51.1.1 107321,107322 1z0wA 207 1.68e+01 1vj5A 555 1.76e+01 c.108.1.2,c.69.1.11 100799,100800 1q5zA 177 1.85e+01 a.196.1.1 95954 1s7jA 262 1.92e+01 d.21.1.2 98647 2esnA 310 1.95e+01 1zd3A 555 1.99e+01 1yzxA 226 1.99e+01 1d1qA 161 2.13e+01 1dg9A c.44.1.1 32642 1i9gA 280 2.15e+01 c.66.1.13 62090 2b7aA 293 2.22e+01 1dik 874 2.45e+01 1dik c.1.12.2,c.8.1.1,d.142.1.5 29304,30702,41572 1ufaA 520 2.46e+01 a.8.3.3,c.6.2.4 99329,99330 2fywA 267 2.49e+01 1knvA 293 2.61e+01 c.52.1.7 68707 1ewfA 456 2.62e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 3fapB 94 2.69e+01 1nsgB a.24.7.1 16612 1zccA 248 2.73e+01 1jsmA 325 2.95e+01 b.19.1.2 63264 1bg2 325 3.03e+01 1bg2 c.37.1.9 32189 2g62A 325 3.25e+01 1jmxA 494 3.35e+01 a.3.1.7,a.3.1.7,b.1.18.14,b.1.18.14,b.61.4.1 66901,66902,66903,66904,66905 7taa 478 3.40e+01 7taa b.71.1.1,c.1.8.1 27778,28765 1nox 205 3.45e+01 1nox d.90.1.1 40242 1t6aA 126 3.47e+01 d.129.8.1 106555 1df7A 159 3.48e+01 3dfr c.71.1.1 34885 1x6vA 630 3.49e+01 1m3uA 264 3.50e+01 c.1.12.8 84784 1xeaA 323 3.54e+01 c.2.1.3,d.81.1.5 109572,109573 1thg 544 3.57e+01 1thg c.69.1.17 34763 1z2nX 324 3.68e+01 1lwdA 413 3.69e+01 c.77.1.1 78265 1clvI 32 3.72e+01 1qfdA g.3.2.1 44075 1ihp 438 3.79e+01 1ihp c.60.1.2 33993 2aheA 267 3.80e+01 1h2vC 771 3.82e+01 a.118.1.14,a.118.1.14,a.118.1.14 76592,76593,76594 1jhnA 424 3.82e+01 b.104.1.1,b.29.1.12 66722,70060 1sczA 233 3.90e+01 c.43.1.1 98802 2db0A 253 3.95e+01 1a0rP 245 3.98e+01 1b9yC c.47.1.6 33054 2a6cA 83 4.02e+01 2bv5A 282 4.09e+01 1u1jA 765 4.36e+01 c.1.22.2,c.1.22.2 107590,107591 1h4vB 421 4.42e+01 1adjA c.51.1.1,d.104.1.1 60624,60625 1qkrA 188 4.49e+01 1qkrA a.24.9.1 16628 2an3A 289 4.58e+01 2fupA 168 4.59e+01 1hfeL 421 4.63e+01 1fehA c.96.1.1,d.58.1.5 36018,39001 1whrA 124 4.65e+01 1w2iA 91 4.70e+01 d.58.10.1 109127 1jmtB 28 4.78e+01 1o4vA 183 4.86e+01 c.23.8.1 86628 1hnnA 282 5.03e+01 c.66.1.15 65895 2aaa 484 5.29e+01 7taa b.71.1.1,c.1.8.1 27777,28764 1dp4A 435 5.31e+01 1dp4A c.93.1.1 35710 1x4tA 92 5.32e+01 2fpmA 322 5.40e+01 2afwA 329 5.45e+01 1xg2B 153 5.46e+01 2cdqA 510 5.53e+01 1ka9H 200 5.53e+01 c.23.16.1 77308 1guxA 218 5.53e+01 1guxA a.74.1.3 18388 1k8kF 168 5.58e+01 d.198.2.1 68312 1esiA 262 5.59e+01 1skf e.3.1.1 42682 1xgsA 295 5.66e+01 1bn5 a.4.5.25,d.127.1.1 16216,41153 1adjA 421 5.75e+01 1adjA c.51.1.1,d.104.1.1 33188,40737 1qgtA 149 5.76e+01 1qgtA a.62.1.1 18135 1yt3A 375 5.80e+01 1n6zA 105 5.88e+01 d.263.1.1 85369 1m7vA 363 5.93e+01 d.174.1.1 78748 1vqsA 116 6.03e+01 2acvA 463 6.03e+01 1qrvA 73 6.16e+01 1cktA a.21.1.1 16425 2gdjA 264 6.17e+01 1br1B 150 6.21e+01 1wdcC a.39.1.5 17309 2fu4A 83 6.24e+01 1amuA 563 6.37e+01 1amuA e.23.1.1 43351 1v96A 149 6.66e+01 2bijA 305 6.72e+01 1q4uA 151 6.75e+01 d.38.1.5 95828 1yozA 116 6.87e+01 1w2fA 276 7.21e+01 d.143.1.3 109125 1kq6A 141 7.27e+01 d.189.1.1 91020 1oyjA 231 7.30e+01 a.45.1.1,c.47.1.5 87597,87598 2b7yA 182 7.31e+01 1pd21 199 7.32e+01 1pd21 1koqA 253 7.46e+01 2cba b.74.1.1 27964 1sphA 88 7.48e+01 1ptf d.94.1.1 40544 1eemA 241 7.57e+01 1eemA a.45.1.1,c.47.1.5 17717,33011 1bd8 156 7.67e+01 1bd8 d.211.1.1 19157 1bquA 215 7.73e+01 1bquA b.1.2.1,b.1.2.1 22066,22067 1u1hA 765 7.74e+01 c.1.22.2,c.1.22.2 107580,107581 1y82A 157 7.80e+01 2ar0A 541 7.87e+01 1j1vA 94 7.94e+01 a.4.12.2 83981 1mjhA 162 8.05e+01 1mjhA c.26.2.4 31639 1i5nA 146 8.18e+01 1i5nA a.24.10.3 61805 1d6gA 47 8.28e+01 1d6gA g.33.1.1 44976 1o7kA 131 8.31e+01 d.189.1.1 81144 1a6bB 40 8.49e+01 1a6bB g.40.1.1 45172 1x6oA 174 8.55e+01 b.34.5.2,b.40.4.5 109493,109494 2aw5A 541 8.58e+01 1f7uA 607 8.64e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1h5qA 265 8.81e+01 1cydA c.2.1.2 60643 1vf1A 229 8.81e+01