# List of top-scoring protein chains for t04-100-30-dssp-ehl2-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1sz2A 332 4.84e-01 6gsvA 217 6.26e-01 1b8xA a.45.1.1,c.47.1.5 17633,32925 1q18A 332 6.43e-01 c.55.1.7,c.55.1.7 104470,104471 1ihp 438 6.48e-01 1ihp c.60.1.2 33993 2fiyA 309 8.90e-01 1tbmA 326 1.10e+00 a.211.1.2 106744 2c4jA 218 1.87e+00 1xw5A 217 2.17e+00 1b4pA 217 2.60e+00 a.45.1.1,c.47.1.5 83158,83159 1jhgA 101 2.74e+00 1jhgA a.4.12.1 19009 1bd8 156 4.11e+00 1bd8 d.211.1.1 19157 1qwoA 442 5.59e+00 c.60.1.2 104620 1jpaA 312 5.93e+00 d.144.1.7 67011 1ad3A 452 6.06e+00 1ad3A c.82.1.1 35335 1zejA 293 6.49e+00 1y3nA 490 6.74e+00 1eemA 241 7.43e+00 1eemA a.45.1.1,c.47.1.5 17717,33011 1zv1A 65 7.65e+00 2gsvA 80 8.52e+00 1es5A 262 9.09e+00 1skf e.3.1.1 42679 1esiA 262 9.43e+00 1skf e.3.1.1 42682 1mzbA 136 9.50e+00 a.4.5.42 91497 1zd3A 555 9.76e+00 1vj5A 555 1.02e+01 c.108.1.2,c.69.1.11 100799,100800 2fmcA 82 1.13e+01 2iu5A 195 1.16e+01 1m3uA 264 1.16e+01 c.1.12.8 84784 1qfxA 460 1.19e+01 1qfxA c.60.1.2 33994 1jb0I 38 1.44e+01 1jb0I f.23.17.1 62826 1kpsB 171 1.45e+01 a.118.12.1 68787 2esnA 310 1.47e+01 2aheA 267 1.52e+01 1x1fA 149 1.59e+01 1zboA 210 1.62e+01 2ctoA 93 1.73e+01 1r4wA 226 1.82e+01 c.47.1.13 97050 2b7aA 293 1.89e+01 2a9iA 113 1.89e+01 1n1jA 93 1.96e+01 a.22.1.3 79813 1x74A 360 1.97e+01 1w1oA 534 2.04e+01 d.58.32.4,d.145.1.1 109071,109072 1rkd 309 2.19e+01 1rkd c.72.1.1 34928 1z2uA 150 2.34e+01 1sq5A 308 2.35e+01 c.37.1.6 105882 1ytaA 180 2.42e+01 2g6tA 306 2.44e+01 1jk8B 190 2.52e+01 1iakB b.1.1.2,d.19.1.1 63147,63148 1or7A 194 2.64e+01 a.4.13.2,a.177.1.1 87332,87333 1h6zA 913 2.70e+01 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1ufaA 520 2.74e+01 a.8.3.3,c.6.2.4 99329,99330 1sszA 34 2.90e+01 j.35.1.1 105999 2furA 209 2.99e+01 2fu4A 83 3.13e+01 1x23A 155 3.15e+01 1x6vA 630 3.19e+01 1kblA 873 3.21e+01 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1tzvA 142 3.24e+01 a.79.1.1 107526 1ohfA 644 3.26e+01 b.121.4.8 93014 1m6jA 261 3.49e+01 c.1.1.1 78693 1whrA 124 3.52e+01 1ewfA 456 3.56e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 1m2kA 249 3.66e+01 c.31.1.5 84754 1z6uA 150 3.72e+01 2fkzA 155 3.80e+01 1okcA 297 3.81e+01 f.42.1.1 93248 1zkeA 83 3.82e+01 1cojA 212 4.11e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1l9lA 74 4.45e+01 a.64.1.1 77827 1d8wA 426 4.50e+01 1de5A c.1.15.2 29394 1jmtB 28 4.55e+01 1xfsA 178 4.64e+01 d.129.3.5 109589 1pgjA 478 4.66e+01 2pgd a.100.1.1,c.2.1.6 18783,30195 1fg7A 356 4.69e+01 1gewA c.67.1.1 59819 1zrzA 364 4.76e+01 1f7uA 607 4.81e+01 1bs2A a.27.1.1,c.26.1.1,d.67.2.1 59673,59674,59675 1y5iC 225 4.86e+01 1z2nX 324 4.86e+01 1vp2A 208 4.88e+01 2gdjA 264 4.96e+01 2fqmA 75 4.98e+01 1ituA 369 4.98e+01 c.1.9.7 71423 1h32A 261 5.08e+01 a.3.1.8,a.3.1.8 76618,76619 1sra 151 5.09e+01 1sra a.39.1.3 17190 1w7lA 422 5.12e+01 c.67.1.1 109226 2gsfA 373 5.17e+01 1noyA 388 5.37e+01 1clqA c.55.3.5 33713 1gewA 356 5.43e+01 1gewA c.67.1.1 60470 1zvzA 279 5.60e+01 2f2gA 221 5.68e+01 1w36C 1122 5.69e+01 2fpmA 322 5.69e+01 1hp5A 512 5.78e+01 1hp4A c.1.8.6,d.92.2.1 61113,61114 1jakA 512 5.81e+01 c.1.8.6,d.92.2.1 66472,66473 1q4mA 221 5.83e+01 a.132.1.3 95805 1yy7A 213 5.84e+01 1i9gA 280 5.91e+01 c.66.1.13 62090 1nd7A 374 5.92e+01 d.148.1.1 91817 4crxA 322 5.93e+01 4crxA a.60.9.1,d.163.1.1 18095,42155 2afwA 329 5.95e+01 1v1rA 400 6.01e+01 c.36.1.11 108272 1a1iA 90 6.10e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1ewqA 765 6.22e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 7atjA 308 6.23e+01 1bgp a.93.1.1 18673 1ycsB 239 6.24e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 1hdiA 413 6.31e+01 16pk c.86.1.1 60964 1x91A 153 6.31e+01 1xioA 261 6.32e+01 1wjgA 137 6.39e+01 1jy2N 53 6.39e+01 h.1.8.1 67440 1xmeA 568 6.50e+01 1o5hA 214 6.51e+01 a.191.1.1 92497 1yzxA 226 6.54e+01 1uk5A 111 6.57e+01 a.7.7.1 99487 1g2fC 90 6.59e+01 k.12.1.1 60222 1fhuA 320 6.63e+01 1fhuA c.1.11.2,d.54.1.1 29234,38878 1im8A 244 6.64e+01 c.66.1.14 66212 1t7rA 269 6.70e+01 a.123.1.1 106635 1llmC 88 6.72e+01 g.37.1.1,g.37.1.1 91059,91060 1sqgA 429 6.73e+01 a.79.1.3,c.66.1.38 105912,105913 2fywA 267 6.75e+01 1ut7A 171 6.78e+01 b.143.1.1 99906 6mhtA 327 6.85e+01 6mhtA c.66.1.26 34226 1vqoI 162 7.06e+01 1gwuA 309 7.11e+01 a.93.1.1 83351 1t01A 255 7.17e+01 a.24.9.1,a.24.9.1 106188,106189 1n2fA 142 7.22e+01 d.227.1.1 79853 1dik 874 7.27e+01 1dik c.1.12.2,c.8.1.1,d.142.1.5 29304,30702,41572 4ubpC 570 7.34e+01 1ubpC b.92.1.1,c.1.9.2 28431,29053 1x7yA 400 7.36e+01 1mp8A 281 7.43e+01 d.144.1.7 91384 1tkeA 224 7.62e+01 1s72I 162 7.70e+01 a.4.7.1 105328 1xo0A 324 7.73e+01 1br1B 150 7.86e+01 1wdcC a.39.1.5 17309 1d6gA 47 7.97e+01 1d6gA g.33.1.1 44976 1v88A 130 8.02e+01 b.55.1.1 108423 1h2vC 771 8.14e+01 a.118.1.14,a.118.1.14,a.118.1.14 76592,76593,76594 2c7pA 327 8.19e+01 1y1xA 191 8.32e+01 2g62A 325 8.34e+01 1v4aA 440 8.35e+01 a.24.16.4,d.218.1.9 108350,108351 1ujcA 161 8.51e+01 1zaaC 87 8.62e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 1t4gA 322 8.64e+01 a.60.4.1,c.37.1.11 106418,106419 1aayA 90 8.67e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 2afaA 425 8.71e+01 1xrsA 516 8.72e+01 1kqfC 217 8.95e+01 f.21.1.1 72874