# List of top-scoring protein chains for t04-100-30-dssp-ebghstl-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ihp 438 6.40e-02 1ihp c.60.1.2 33993 1tbmA 326 1.23e-01 a.211.1.2 106744 1sz2A 332 2.01e-01 6gsvA 217 2.38e-01 1b8xA a.45.1.1,c.47.1.5 17633,32925 1q18A 332 3.36e-01 c.55.1.7,c.55.1.7 104470,104471 1zejA 293 8.29e-01 1qfxA 460 9.24e-01 1qfxA c.60.1.2 33994 2c4jA 218 1.02e+00 1xw5A 217 1.20e+00 1jpaA 312 1.39e+00 d.144.1.7 67011 1bd8 156 1.47e+00 1bd8 d.211.1.1 19157 1qwoA 442 1.47e+00 c.60.1.2 104620 1b4pA 217 1.66e+00 a.45.1.1,c.47.1.5 83158,83159 1jhgA 101 1.79e+00 1jhgA a.4.12.1 19009 1zd3A 555 1.97e+00 1eemA 241 2.16e+00 1eemA a.45.1.1,c.47.1.5 17717,33011 1kblA 873 2.42e+00 c.1.12.2,c.8.1.1,d.142.1.5 68384,68385,68386 1h6zA 913 2.59e+00 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1y3nA 490 2.73e+00 2fu4A 83 2.78e+00 1vj5A 555 2.88e+00 c.108.1.2,c.69.1.11 100799,100800 2fiyA 309 2.98e+00 1mzbA 136 3.11e+00 a.4.5.42 91497 2iu5A 195 3.26e+00 1w1oA 534 3.51e+00 d.58.32.4,d.145.1.1 109071,109072 1zv1A 65 4.09e+00 1x6vA 630 5.16e+00 1d8wA 426 5.74e+00 1de5A c.1.15.2 29394 1im5A 180 5.92e+00 c.33.1.3 66211 1okcA 297 6.02e+00 f.42.1.1 93248 1ufaA 520 6.37e+00 a.8.3.3,c.6.2.4 99329,99330 1x1fA 149 6.44e+00 2furA 209 7.39e+00 1z2uA 150 7.41e+00 1zboA 210 7.61e+00 1x23A 155 8.25e+00 1sszA 34 8.59e+00 j.35.1.1 105999 1zq9A 285 9.45e+00 1jb0I 38 9.61e+00 1jb0I f.23.17.1 62826 1hbzA 498 9.68e+00 1cf9A e.5.1.1 60937 1uk5A 111 9.91e+00 a.7.7.1 99487 1hdiA 413 9.92e+00 16pk c.86.1.1 60964 1jk8B 190 9.93e+00 1iakB b.1.1.2,d.19.1.1 63147,63148 1gweA 503 1.09e+01 e.5.1.1 70667 1zkeA 83 1.15e+01 1y5iC 225 1.27e+01 2aheA 267 1.27e+01 1whrA 124 1.29e+01 1z2nX 324 1.34e+01 1m98A 317 1.40e+01 a.175.1.1,d.17.4.6 78866,78867 2b7aA 293 1.41e+01 1sq5A 308 1.44e+01 c.37.1.6 105882 2gsvA 80 1.47e+01 1jhdA 396 1.47e+01 b.122.1.3,c.26.1.5 66712,66713 1fsu 492 1.51e+01 1auk c.76.1.2 35032 1pgjA 478 1.54e+01 2pgd a.100.1.1,c.2.1.6 18783,30195 1n1jA 93 1.56e+01 a.22.1.3 79813 1r4wA 226 1.56e+01 c.47.1.13 97050 2afwA 329 1.60e+01 1xgkA 352 1.66e+01 1no1A 126 1.73e+01 a.179.1.1 85913 1dik 874 1.73e+01 1dik c.1.12.2,c.8.1.1,d.142.1.5 29304,30702,41572 7atjA 308 1.82e+01 1bgp a.93.1.1 18673 1es5A 262 1.83e+01 1skf e.3.1.1 42679 1esiA 262 1.84e+01 1skf e.3.1.1 42682 1ycsB 239 1.85e+01 1ycsB d.211.1.1,b.34.2.1 19155,24553 1gcqC 70 1.85e+01 1gcpA b.34.2.1 60436 1br1B 150 1.88e+01 1wdcC a.39.1.5 17309 1vls 146 1.94e+01 1vls a.24.2.1 16532 1t1uA 639 1.96e+01 2gdjA 264 1.97e+01 1jmtB 28 1.99e+01 1x74A 360 1.99e+01 1tkeA 224 2.00e+01 1b8aA 438 2.00e+01 1b8aA b.40.4.1,d.104.1.1 25244,40765 2fh1A 344 2.17e+01 1p8xA 344 2.19e+01 d.109.1.1,d.109.1.1,d.109.1.1 94365,94366,94367 1im8A 244 2.21e+01 c.66.1.14 66212 1nd7A 374 2.23e+01 d.148.1.1 91817 1x91A 153 2.26e+01 1gewA 356 2.29e+01 1gewA c.67.1.1 60470 1rh9A 373 2.30e+01 1kpsB 171 2.40e+01 a.118.12.1 68787 1qwyA 291 2.46e+01 b.84.3.2 96509 1i9gA 280 2.46e+01 c.66.1.13 62090 2g6tA 306 2.47e+01 1ad3A 452 2.49e+01 1ad3A c.82.1.1 35335 1qd9A 124 2.51e+01 1qu9A d.79.1.1 39758 2f1sA 186 2.57e+01 2bbrA 195 2.58e+01 1n1fA 159 2.63e+01 a.26.1.3 79803 1d6gA 47 2.69e+01 1d6gA g.33.1.1 44976 1n3gA 113 2.69e+01 d.204.1.1 79962 2ctoA 93 2.71e+01 1tzvA 142 2.76e+01 a.79.1.1 107526 2esnA 310 2.76e+01 1yozA 116 2.79e+01 1n2fA 142 2.87e+01 d.227.1.1 79853 1m6kA 251 2.88e+01 e.3.1.1 78695 1iw7C 1119 2.89e+01 e.29.1.1 71474 1v9jA 113 2.94e+01 d.52.6.1 100542 1h2vC 771 2.97e+01 a.118.1.14,a.118.1.14,a.118.1.14 76592,76593,76594 1zrzA 364 2.98e+01 1ogsA 497 3.00e+01 b.71.1.2,c.1.8.3 86997,86998 1v4aA 440 3.02e+01 a.24.16.4,d.218.1.9 108350,108351 1gwuA 309 3.12e+01 a.93.1.1 83351 2gw6A 123 3.17e+01 1fzyA 149 3.22e+01 d.20.1.1 65072 1ut7A 171 3.27e+01 b.143.1.1 99906 1pn0A 665 3.52e+01 c.3.1.2,c.47.1.10,d.16.1.2 94918,94919,94920 2fpmA 322 3.60e+01 2fqmA 75 3.70e+01 1nu7D 282 3.80e+01 a.8.6.1,a.8.6.1 92191,92192 1t92A 116 3.81e+01 1vbiA 344 3.83e+01 1fhuA 320 3.85e+01 1fhuA c.1.11.2,d.54.1.1 29234,38878 6mhtA 327 3.91e+01 6mhtA c.66.1.26 34226 1ewfA 456 3.91e+01 1bp1 d.83.1.1,d.83.1.1 40024,40025 1v9nA 360 3.93e+01 1jae 471 3.95e+01 1smd b.71.1.1,c.1.8.1 27773,28760 2gsfA 373 3.97e+01 1ppjF 110 4.01e+01 f.27.1.1 104262 2fgtA 417 4.01e+01 1dbwA 126 4.08e+01 1dbwA c.23.1.1 31095 1c52 131 4.23e+01 1c52 a.3.1.1 15810 1zxkA 98 4.25e+01 1h2sA 225 4.27e+01 f.13.1.1 76578 1t4gA 322 4.28e+01 a.60.4.1,c.37.1.11 106418,106419 1rzhL 281 4.34e+01 f.26.1.1 98164 1pq1A 196 4.37e+01 f.1.4.1 94986 2c7pA 327 4.41e+01 2f96A 224 4.41e+01 1xl7A 612 4.47e+01 1b06A 210 4.48e+01 1avmA a.2.11.1,d.44.1.1 15740,38737 1geeA 261 4.55e+01 c.2.1.2 90509 1gcoA 261 4.55e+01 1ybvA c.2.1.2 29884 1nykA 165 4.56e+01 b.33.1.1 86408 1g7oA 215 4.78e+01 1g7oA a.45.1.1,c.47.1.5 60332,60333 2aplA 157 4.80e+01 1fg7A 356 4.80e+01 1gewA c.67.1.1 59819 1xfsA 178 4.86e+01 d.129.3.5 109589 1mp8A 281 4.90e+01 d.144.1.7 91384 1tqyB 415 4.91e+01 c.95.1.1,c.95.1.1 107247,107248 1yy7A 213 4.94e+01 1ewqA 765 5.00e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 1w07A 659 5.00e+01 2ccmA 191 5.02e+01 1q87A 221 5.02e+01 e.47.1.1 96192 1ohfA 644 5.04e+01 b.121.4.8 93014 1wjgA 137 5.06e+01 1s6lA 212 5.06e+01 1vpqA 273 5.07e+01 1sqgA 429 5.07e+01 a.79.1.3,c.66.1.38 105912,105913 1m3uA 264 5.11e+01 c.1.12.8 84784 1m48A 133 5.12e+01 a.26.1.2 74443 1ha3A 405 5.19e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 60869,60870,60871 1j8yF 297 5.19e+01 1ng1 a.24.13.1,c.37.1.10 62747,62748 1j8mF 297 5.21e+01 1ng1 a.24.13.1,c.37.1.10 62742,62743 2c78A 405 5.21e+01 1sra 151 5.24e+01 1sra a.39.1.3 17190 1exmA 405 5.25e+01 1efcA b.43.3.1,b.44.1.1,c.37.1.8 25696,25736,32131 2afdA 88 5.27e+01 1z6gA 218 5.28e+01 1xg2B 153 5.28e+01 1scfA 273 5.31e+01 1exzA a.26.1.2 16873 1fohA 664 5.34e+01 1fohA c.3.1.2,c.47.1.10,d.16.1.2 30381,33078,37900 1pd21 199 5.43e+01 1pd21 1acf 125 5.46e+01 3nul d.110.1.1 40882 1x31D 99 5.46e+01 2bnfB 241 5.49e+01 1k6xA 352 5.57e+01 c.2.1.2 68238 1z0wA 207 5.64e+01 2ewcA 126 5.66e+01 2a9iA 113 5.70e+01 1fi2A 201 5.77e+01 1fi2A b.82.1.2 59845 1hr6A 475 5.91e+01 1hr6A d.185.1.1,d.185.1.1 61164,61165 1zbfA 142 6.10e+01 1s5lX 50 6.12e+01 1oyjA 231 6.24e+01 a.45.1.1,c.47.1.5 87597,87598 1p4cA 380 6.29e+01 c.1.4.1 94100 1llmC 88 6.30e+01 g.37.1.1,g.37.1.1 91059,91060 2dbnA 461 6.30e+01 1w1nA 33 6.35e+01 1jgjA 217 6.36e+01 1c3wA f.13.1.1 62952 1iqcA 308 6.39e+01 a.3.1.5,a.3.1.5 66266,66267 2et1A 201 6.43e+01 1j3gA 187 6.45e+01 d.118.1.1 77075 2mtaC 147 6.48e+01 2mtaC a.3.1.1 15908 1z6uA 150 6.55e+01 1cojA 212 6.64e+01 1avmA a.2.11.1,d.44.1.1 15737,38734 1g2fC 90 6.70e+01 k.12.1.1 60222 2b05A 246 6.75e+01 2fb6A 117 6.86e+01 1ugpA 203 6.89e+01 d.149.1.1 107831 1ireA 204 6.91e+01 d.149.1.1 76769 1zvzA 279 6.96e+01 1esmA 316 6.96e+01 1esmA c.37.1.6 31953 1repC 251 6.98e+01 1repC a.4.5.10,a.4.5.10 16125,16126 1g8fA 511 6.98e+01 1g8fA b.122.1.3,c.26.1.5,c.37.1.15 60348,60349,60350 1s5lB 510 7.05e+01 1mg2D 155 7.07e+01 a.3.1.1 79062 2ayvA 166 7.09e+01 1xioA 261 7.13e+01 1x8vA 455 7.18e+01 2fkzA 155 7.18e+01 1ds1A 324 7.20e+01 1drtA b.82.2.2 28127 1sphA 88 7.21e+01 1ptf d.94.1.1 40544 1o5kA 306 7.25e+01 c.1.10.1 92504 1a1iA 90 7.40e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 2occH 85 7.66e+01 2occH a.51.1.1 17796 1gjwA 637 7.72e+01 b.71.1.1,c.1.8.1 60582,60583 1sheA 103 7.72e+01 d.274.1.1 105551 1qh4A 380 7.77e+01 1qh4A a.83.1.1,d.128.1.2 18462,41197 1tqxA 227 7.78e+01 1bquA 215 7.83e+01 1bquA b.1.2.1,b.1.2.1 22066,22067 1qo7A 394 7.84e+01 1qo7A c.69.1.11 34697 1vr5A 547 7.84e+01 2cygA 312 7.87e+01 1x54A 434 7.88e+01 1u5tC 202 7.91e+01 a.4.5.54,a.4.5.54 107688,107689 2b3oA 532 7.95e+01 1l1jA 239 8.04e+01 b.47.1.1 84516 1vjeA 166 8.08e+01 d.185.1.2 100807 1h65A 270 8.10e+01 c.37.1.8 65640 2b33A 140 8.15e+01 1jj2L 194 8.16e+01 1ffkI d.12.1.2 63097 1h5zA 455 8.16e+01 a.104.1.1 90622 1li5B 461 8.16e+01 a.27.1.1,c.26.1.1 73914,73915 1uby 367 8.17e+01 1uby a.128.1.1 19435 1innA 166 8.19e+01 1j98A d.185.1.2 62608 1t01A 255 8.23e+01 a.24.9.1,a.24.9.1 106188,106189 1b79A 119 8.24e+01 1b79A a.81.1.1 18451 1v37A 177 8.28e+01 1lghA 56 8.32e+01 1lghA f.3.1.1 43733 1vqoD 177 8.37e+01 2fmcA 82 8.41e+01 1xrsA 516 8.43e+01 1umgA 362 8.44e+01 d.280.1.1 107956 1jbbA 153 8.46e+01 1u9aA d.20.1.1 62842 1u13A 455 8.49e+01 a.104.1.1 107578 1e9xA 455 8.56e+01 1ea1A a.104.1.1 18969 1px5A 349 8.58e+01 a.160.1.2,d.218.1.6 95277,95278 1mgpA 313 8.61e+01 c.119.1.1 79098 1v1rA 400 8.62e+01 c.36.1.11 108272 2g3kA 94 8.63e+01 2f5tX 233 8.64e+01 1mr7A 209 8.65e+01 b.81.1.3 91430 1u9yA 284 8.65e+01 2g38B 198 8.76e+01 1kf6D 119 8.77e+01 f.21.2.2 72400 2g62A 325 8.80e+01 1xs1A 193 8.80e+01 1bg2 325 8.93e+01 1bg2 c.37.1.9 32189 4crxA 322 9.00e+01 4crxA a.60.9.1,d.163.1.1 18095,42155