# List of top-scoring protein chains for t04-100-30-CB_burial_14_7-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1m6jA 261 2.54e-01 c.1.1.1 78693 1jpaA 312 8.42e-01 d.144.1.7 67011 2bc4A 211 1.04e+00 1pvyA 227 3.90e+00 d.115.1.2 95195 1ewsA 32 4.65e+00 1ewsA g.9.1.1 59534 1guxA 218 5.39e+00 1guxA a.74.1.3 18388 2ar0A 541 5.69e+00 1w2qA 127 5.71e+00 1snnA 227 6.09e+00 d.115.1.2 105821 1llmC 88 7.65e+00 g.37.1.1,g.37.1.1 91059,91060 1yduA 170 8.02e+00 1ngkA 128 8.69e+00 a.1.1.1 85673 1bquA 215 9.04e+00 1bquA b.1.2.1,b.1.2.1 22066,22067 1yyvA 131 9.25e+00 2furA 209 1.09e+01 1clvI 32 1.13e+01 1qfdA g.3.2.1 44075 1a1iA 90 1.26e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 44998,44999,45000 1vdiA 52 1.27e+01 1zaaC 87 1.34e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45013,45014,45015 2fmcA 82 1.51e+01 1aayA 90 1.55e+01 1aayA g.37.1.1,g.37.1.1,g.37.1.1 45001,45002,45003 1xeaA 323 1.59e+01 c.2.1.3,d.81.1.5 109572,109573 1vbiA 344 1.74e+01 1pzqA 60 1.79e+01 a.34.3.1 95466 1dugA 234 1.80e+01 1b8xA a.45.1.1,c.47.1.5 17718,33012 1bh9B 89 1.82e+01 1bh9B a.22.1.3 16485 2fiyA 309 1.89e+01 1v1rA 400 1.89e+01 c.36.1.11 108272 1jmtB 28 2.00e+01 1a6bB 40 2.29e+01 1a6bB g.40.1.1 45172 1f5vA 240 2.29e+01 1bkjA d.90.1.1 40255 1ogqA 313 2.46e+01 c.10.2.8 86996 1ewqA 765 2.48e+01 1ewqA a.113.1.1,c.37.1.12,c.55.6.1,d.75.2.1 19069,32383,33740,39743 2bkaA 242 2.50e+01 1itbB 315 2.65e+01 1itbB b.1.1.4,b.1.1.4,b.1.1.4 21720,21721,21722 1ijgA 309 2.75e+01 1fouA e.27.1.1 62493 2cvdA 198 2.92e+01 2arzA 247 2.94e+01 2h0uA 217 2.97e+01 1bo4A 168 3.02e+01 1bo4A d.108.1.1 40798 2gpzA 111 3.10e+01 2gptA 523 3.12e+01 1u6pA 56 3.14e+01 1iuhA 198 3.17e+01 d.61.1.2 83711 2a6cA 83 3.24e+01 1x6iA 91 3.25e+01 1pgtA 210 3.27e+01 1pgtA a.45.1.1,c.47.1.5 17515,32809 1d6gA 47 3.32e+01 1d6gA g.33.1.1 44976 1n3gA 113 3.36e+01 d.204.1.1 79962 1ecrA 309 3.38e+01 1ecrA e.2.1.1 42678 1apyA 162 3.42e+01 1apyA d.153.1.5 42004 1gnkA 112 3.44e+01 2pii d.58.5.1 39073 7aatA 401 3.51e+01 1ajsA c.67.1.1 34250 1m2kA 249 3.52e+01 c.31.1.5 84754 1hynP 379 3.60e+01 1hynP d.112.1.2 61408 1iieA 75 3.71e+01 1iieA a.109.1.1 19039 2auwA 170 3.71e+01 2a2rA 210 3.72e+01 1n71A 180 3.75e+01 d.108.1.1 85370 1gnwA 211 3.81e+01 1gnwA a.45.1.1,c.47.1.5 17727,33021 1nkzA 53 3.93e+01 f.3.1.1 80611 1hdmA 201 4.02e+01 1iakA b.1.1.2,d.19.1.1 21583,38157 1iyhA 198 4.02e+01 a.45.1.1,c.47.1.5 83790,83791 1x6vA 630 4.08e+01 1n2fA 142 4.15e+01 d.227.1.1 79853 1h6zA 913 4.17e+01 c.1.12.2,c.8.1.1,d.142.1.5 70906,70907,70908 1p0yA 444 4.27e+01 a.166.1.1,b.85.7.3 87654,87655 2gw8A 114 4.45e+01 1g5cA 170 4.60e+01 1g5cA c.53.2.1 60264 2aheA 267 4.72e+01 1nc8 29 4.79e+01 g.40.1.1 45170 1h5wA 309 4.89e+01 e.27.1.1 65635 2b7yA 182 4.91e+01 1qsdA 106 4.92e+01 1qsdA a.7.5.1 16335 1vaxA 287 4.95e+01 1wkvA 389 4.98e+01 1thg 544 5.08e+01 1thg c.69.1.17 34763 1nrgA 261 5.19e+01 b.45.1.1 80694 1jmuA 41 5.22e+01 e.35.1.1 66891 1w53A 84 5.24e+01 a.186.1.2 109175 1q4uA 151 5.41e+01 d.38.1.5 95828 1w9zA 283 5.53e+01 1n6zA 105 5.54e+01 d.263.1.1 85369 1pvc2 271 5.83e+01 1aym2 1bf5A 545 5.89e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17766,22460,40526 1amuA 563 5.94e+01 1amuA e.23.1.1 43351 1b87A 181 6.07e+01 1b87A d.108.1.1 40797 1pd21 199 6.31e+01 1pd21 1gvjA 146 6.36e+01 a.4.5.21 90525 1bd8 156 6.46e+01 1bd8 d.211.1.1 19157 1g2fC 90 6.53e+01 k.12.1.1 60222 2b7aA 293 6.56e+01 2if1 126 6.56e+01 2if1 d.64.1.1 39547 1gqeA 365 6.57e+01 e.38.1.1 70351 1rr7A 129 6.69e+01 a.4.1.14 105075 1qgtA 149 6.70e+01 1qgtA a.62.1.1 18135 1lbkA 208 6.76e+01 a.45.1.1,c.47.1.5 73809,73810 2fi1A 190 6.87e+01 1b35A 260 7.19e+01 1b35A b.121.4.1 23333 351c 82 7.22e+01 451c a.3.1.1 15905 1pvgA 418 7.24e+01 d.14.1.3,d.122.1.2 95161,95162 451c 82 7.27e+01 451c a.3.1.1 15904 1m2oA 768 7.28e+01 a.71.2.1,b.2.8.1,c.62.1.2,d.109.2.1,g.41.10.1 78480,78481,78482,78483,78484 1gvnB 287 7.37e+01 c.37.1.21 76354 1w36C 1122 7.49e+01 1zlmA 58 7.56e+01 2bsaA 303 7.74e+01 1pba 81 7.74e+01 1pytA d.58.3.1 39067 1ooeA 236 7.78e+01 c.2.1.2 87196 1yrnB 83 7.83e+01 1akhB a.4.1.1 15986 1jwiB 125 8.17e+01 d.169.1.1 67384 1m4zA 238 8.23e+01 b.34.12.1 78630 1que 303 8.29e+01 1fnc b.43.4.2,c.25.1.1 25647,31537 1tuoA 464 8.33e+01 1tuaA 191 8.36e+01 d.51.1.1,d.51.1.1 107321,107322 1v88A 130 8.41e+01 b.55.1.1 108423 2h21A 440 8.53e+01 2bapC 56 8.68e+01 1ad3A 452 8.68e+01 1ad3A c.82.1.1 35335 1w34A 304 8.69e+01 1hdiA 413 8.70e+01 16pk c.86.1.1 60964 1q9uA 130 8.79e+01 d.129.7.1 96314 2bmwA 304 8.87e+01 1ka9H 200 8.92e+01 c.23.16.1 77308