Best Alignments for T0351

To select the top models, SAM generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment AL alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
2ahqA/T0351-2ahqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2ahqA/T0351-2ahqA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 1.4527e+004.63e-06
2g0uA/T0351-2g0uA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2g0uA/T0351-2g0uA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.0958e+004.92e-06
1f1sA/T0351-1f1sA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1f1sA/T0351-1f1sA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 3.4387e+003.31e-06 a.102.3.2
b.1.18.2
b.24.1.1
b.30.5.2
1ufiA/T0351-1ufiA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1ufiA/T0351-1ufiA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 5.0084e+002.67e-05 a.30.4.1
1hynP/T0351-1hynP-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1hynP/T0351-1hynP-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.4687e+004.41e-05 1hynP d.112.1.2
1osa/T0351-1osa-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1osa/T0351-1osa-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 6.8456e+004.85e-04 1cll a.39.1.5
1fseA/T0351-1fseA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1fseA/T0351-1fseA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.0077e+007.25e-03 1fseA a.4.6.2
1u7kA/T0351-1u7kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1u7kA/T0351-1u7kA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 7.1387e+001.28e-06
1xqaA/T0351-1xqaA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 1xqaA/T0351-1xqaA-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.2955e+001.66e+01
2b20A/T0351-2b20A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.a2m 2b20A/T0351-2b20A-t2k-local-str2+near-backbone-11-0.8+0.6+0.8-adpstyle5.al 8.5324e+001.39e-01

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001