# List of top-scoring protein chains for T0351.t06-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1gl6A 436 2.75e-01 c.37.1.11 70259 1e9rA 437 2.75e-01 c.37.1.11 64827 1swvA 267 3.50e-01 1fezA 256 4.27e-01 1fezA c.108.1.3 43343 1rdfA 267 4.32e-01 c.108.1.3 104884 1rqlA 267 4.34e-01 c.108.1.3 97750 1gd8A 118 8.64e-01 d.188.1.1 60445 1xm2A 173 1.46e+00 1zclA 180 1.63e+00 1zckA 154 1.77e+00 1rxdA 159 1.87e+00 1cr6A 554 2.01e+00 1cr6B c.69.1.11,c.108.1.2 34687,43337 1x24A 180 2.19e+00 1nrjB 218 2.44e+00 c.37.1.8 86125 1uujA 88 3.45e+00 a.221.1.1 108046 1thtA 305 3.93e+00 1thtA c.69.1.13 34711 2e2c 156 4.52e+00 1u9aA d.20.1.1 38336 1sk4A 163 4.89e+00 d.118.1.1 105664 1twqA 165 4.94e+00 1y1uA 585 5.75e+00 2bjkA 516 6.52e+00 1uzbA 516 6.77e+00 c.82.1.1 100220 1jatB 138 6.81e+00 1jatB d.20.1.1 62819 1neu 124 7.40e+00 1neu b.1.1.1 19704 1xad 345 7.59e+00 1cnzA c.77.1.1 35055 1m32A 366 9.26e+00 c.67.1.3 78508 1ni5A 433 9.61e+00 c.26.2.5,d.229.1.1 80533,80534 2b5eA 504 1.04e+01 1rypA 243 1.18e+01 1pmaA d.153.1.4 41932 1g0uG 252 1.20e+01 d.153.1.4 41952 1khhA 198 1.34e+01 c.66.1.16 68615 1p1cA 199 1.35e+01 c.66.1.16 87669 1xqaA 113 1.38e+01 1z5sA 158 1.43e+01 1kpsA 159 1.44e+01 d.20.1.1 68786 1a3s 160 1.45e+01 1u9aA d.20.1.1 38335 2grnA 161 1.45e+01 1u9aA 160 1.45e+01 1u9aA d.20.1.1 38333 1xclA 235 1.46e+01 1nepA 130 1.47e+01 b.1.18.7 80440 1vhfA 113 1.51e+01 d.58.5.2 100671 2grpA 161 1.52e+01 1rxtA 496 1.53e+01 2cxxA 190 1.57e+01 1yirA 408 1.59e+01 1vyhC 410 1.62e+01 1s9vA 193 1.70e+01 b.1.1.2,d.19.1.1 98760,98761 1lbqA 362 1.75e+01 c.92.1.1 77877 1uvqA 197 1.76e+01 b.1.1.2,d.19.1.1 100062,100063 2groA 161 1.84e+01 2cpjA 99 2.04e+01 2napA 723 2.11e+01 2napA b.52.2.2,c.81.1.1 26926,35334 2f51A 118 2.15e+01 1yrvA 169 2.25e+01 1w77A 228 2.41e+01 1zs8A 274 2.42e+01 1srvA 145 2.47e+01 1derA c.8.5.1 30817 1kw4A 89 2.51e+01 a.60.1.2 73077 1fjcA 96 2.56e+01 1fjcA d.58.7.1 39212 1jd9A 453 2.60e+01 b.71.1.1,c.1.8.1 77106,77107 1m50A 365 2.60e+01 b.75.1.1 78632 1ksaA 366 2.60e+01 4bcl b.75.1.1 27969 1jd7A 453 2.68e+01 b.71.1.1,c.1.8.1 77104,77105 2f46A 156 2.74e+01 2fulA 177 2.75e+01 1zhcA 76 2.91e+01 1nknA 89 2.98e+01 h.1.26.1 85825 2grrA 161 3.06e+01 1qnrA 344 3.12e+01 1qnoA c.1.8.3 28834 1kr4A 125 3.16e+01 d.58.5.2 72889 2fi9A 128 3.17e+01 1s67L 119 3.28e+01 d.110.3.2 105303 1o5jA 113 3.29e+01 d.58.5.2 92503 1vrkA 148 3.91e+01 1cll k.21.1.1 46451 1v9yA 167 4.00e+01 d.110.3.2 108454 1vorO 114 4.05e+01 1nkwL 116 4.13e+01 i.1.1.2 80597 2fo0A 495 4.22e+01 1g94A 448 4.28e+01 b.71.1.1,c.1.8.1 65169,65170 1aqm 453 4.29e+01 1smd b.71.1.1,c.1.8.1 27717,28704 1kxhA 448 4.41e+01 b.71.1.1,c.1.8.1 73151,73152 1x25A 128 4.45e+01 1wsrA 375 4.49e+01 2grqA 161 4.54e+01 1mmoB 384 4.55e+01 1mtyB a.25.1.2 16768 1exrA 148 4.56e+01 1cll a.39.1.5 17299 1clm 148 4.58e+01 1cll a.39.1.5 17301 1u58A 253 4.60e+01 1m4wA 197 4.78e+01 b.29.1.11 84801 1h2tC 723 4.99e+01 a.118.1.14,a.118.1.14,a.118.1.14 76580,76581,76582 1oplA 537 5.00e+01 b.34.2.1,d.93.1.1,d.144.1.7 87235,87236,87237 2f2lA 167 5.08e+01 2d1sA 548 5.13e+01 2d1tA 548 5.17e+01 1h2vC 771 5.23e+01 a.118.1.14,a.118.1.14,a.118.1.14 76592,76593,76594 1n52A 790 5.25e+01 a.118.1.14,a.118.1.14,a.118.1.14 79999,80000,80001 1ir1S 123 5.29e+01 d.73.1.1 71290 1fy9A 193 5.33e+01 1derA c.8.5.1 30779 1hlgA 371 5.38e+01 1hlgA c.69.1.6 34656 8rucI 123 5.39e+01 1rboC d.73.1.1 39629 1byfA 125 5.52e+01 1byfA d.169.1.1 42419 1b6g 310 5.56e+01 1b6g c.69.1.8 34661 1ede 310 5.56e+01 1b6g c.69.1.8 34662 1h6kA 757 5.76e+01 a.118.1.14,a.118.1.14,a.118.1.14 60675,60676,60677 2a3qA 170 5.86e+01 1oepA 432 6.09e+01 c.1.11.1,d.54.1.1 86918,86919 1xg7A 250 6.13e+01 1opjA 293 6.31e+01 d.144.1.7 87230 1xzyA 90 6.32e+01 1w09A 92 6.42e+01 a.7.11.1 108983 2f4jA 287 6.62e+01 1o4sA 389 6.63e+01 c.67.1.1 86620 1nis 754 6.72e+01 1amj c.8.2.1,c.83.1.1 30730,35406 1c97A 753 6.75e+01 1amj c.8.2.1,c.83.1.1 30731,35407 1b0jA 754 6.76e+01 1amj c.8.2.1,c.83.1.1 30719,35395 8acn 754 6.77e+01 1amj c.8.2.1,c.83.1.1 30724,35400 1b0mA 753 6.83e+01 1amj c.8.2.1,c.83.1.1 30722,35398 7acn 754 6.84e+01 1amj c.8.2.1,c.83.1.1 30717,35393 1gyrA 364 6.86e+01 b.35.1.2,c.2.1.1 83386,83387 1qs7A 145 6.92e+01 k.21.1.1 88373 1qtxA 148 6.99e+01 k.21.1.1 88375 1zvaA 77 7.10e+01 1gu7A 364 7.12e+01 b.35.1.2,c.2.1.1 83321,83322 1zx3A 122 7.15e+01 1v3aA 173 7.29e+01 1n9gB 386 7.30e+01 b.35.1.2,c.2.1.1 91722,91723 1mut 129 7.32e+01 1tum d.113.1.1 40921 1r6hA 172 7.34e+01 c.45.1.1 97150 2a3kA 296 7.41e+01 2g2hA 287 7.42e+01 1riiA 265 7.43e+01 1h0kA 364 7.48e+01 b.35.1.2,c.2.1.1 83435,83436 2g1tA 287 7.49e+01 1mu5A 471 7.54e+01 a.156.1.3,d.14.1.3,d.122.1.2 79472,79473,79474 1z5bA 469 7.54e+01 1mx0A 472 7.54e+01 a.156.1.3,d.14.1.3,d.122.1.2 79618,79619,79620 1opkA 495 7.55e+01 b.34.2.1,d.93.1.1,d.144.1.7 87232,87233,87234 1n9gA 386 7.66e+01 b.35.1.2,c.2.1.1 91720,91721 1wp5A 323 7.92e+01 1yoeA 322 7.95e+01 1hqlA 257 8.02e+01 b.29.1.1 65907 1ecmA 109 8.14e+01 1ecmA a.130.1.1 19492 2b5iC 199 8.16e+01 1w0bA 102 8.33e+01 a.7.11.1 108985 1z8uA 102 8.35e+01 1pn2A 280 8.41e+01 d.38.1.4,d.38.1.4 94930,94931 3kar 346 8.54e+01 1bg2 c.37.1.9 32198 1exg 110 8.55e+01 1exg b.2.2.1 22387 1f9vA 347 8.56e+01 1bg2 c.37.1.9 59745 1pn4A 280 8.57e+01 d.38.1.4,d.38.1.4 94940,94941 1gzcA 239 8.63e+01 b.29.1.1 70803 1ezrA 314 8.87e+01 2masA c.70.1.1 34816 1f9uA 347 8.89e+01 1bg2 c.37.1.9 59744 1flcB 175 8.95e+01 1flcB h.3.1.1 45716 1f9wA 347 8.97e+01 1bg2 c.37.1.9 59746 1yo5C 97 8.99e+01