# List of top-scoring protein chains for t06-100-30-near-backbone-11-scores hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1swvA 267 1.11e-02 1rdfA 267 3.27e-02 c.108.1.3 104884 1exrA 148 8.09e-02 1cll a.39.1.5 17299 1gd8A 118 1.13e-01 d.188.1.1 60445 1xqaA 113 2.43e-01 1ggzA 148 2.46e-01 a.39.1.5 70176 1yirA 408 3.08e-01 1jl5A 454 5.07e-01 c.10.2.6 66830 1g4wR 383 5.15e-01 1g4uS a.24.11.1,c.45.1.2 16644,32692 2ahqA 76 5.66e-01 2f3yA 148 8.74e-01 1vq0A 302 1.01e+00 1tjlA 151 1.36e+00 a.2.14.1,g.39.1.13 107027,107028 1twuA 139 1.43e+00 d.32.1.8 107413 2fupA 168 1.43e+00 2fi9A 128 1.54e+00 1aj8A 371 1.59e+00 1aj8A a.103.1.1 18900 1yf2A 425 2.23e+00 1w6sB 74 2.49e+00 1x1tA 260 2.50e+00 2a3qA 170 2.56e+00 1x6iA 91 2.78e+00 1nkpB 83 2.90e+00 a.38.1.1 80574 1q1vA 70 2.91e+00 a.159.4.1 104479 1o0yA 260 3.26e+00 c.1.10.1 80756 1nepA 130 3.38e+00 b.1.18.7 80440 1tvlA 454 3.56e+00 c.1.16.4 107366 1sziA 247 3.78e+00 a.24.23.1 106159 1no1A 126 3.93e+00 a.179.1.1 85913 1ub3A 220 3.95e+00 c.1.10.1 88395 2b20A 403 4.14e+00 1v54E 109 4.37e+00 a.118.11.1 100326 1kveB 77 5.31e+00 1kveB 1go4E 100 5.50e+00 h.1.22.1 70296 1wmhA 89 5.62e+00 1lfb 99 5.68e+00 1lfb a.4.1.1 15989 1z8uA 102 5.82e+00 1ov2A 99 5.92e+00 a.13.1.1 93580 1zhcA 76 6.09e+00 1avsA 90 6.22e+00 1cll a.39.1.5 17226 1g4iA 123 6.75e+00 1poa a.133.1.2 60241 1gvjA 146 6.99e+00 a.4.5.21 90525 1zo0A 126 7.27e+00 1wr2A 238 7.40e+00 1neu 124 7.95e+00 1neu b.1.1.1 19704 1n82A 331 8.32e+00 c.1.8.3 91703 1z5bA 469 8.67e+00 1o7fA 469 9.54e+00 a.4.5.31,b.82.3.2,b.82.3.2 81131,81132,81133 1bgf 124 9.61e+00 1bgf a.90.1.1 18537 1uujA 88 1.02e+01 a.221.1.1 108046 1p1lA 102 1.03e+01 d.58.5.2 87695 1kr4A 125 1.07e+01 d.58.5.2 72889 1kllA 130 1.09e+01 d.32.1.2 72720 1ufiA 64 1.10e+01 a.30.4.1 99336 1r85A 379 1.11e+01 c.1.8.3 104839 1o54A 277 1.12e+01 c.66.1.13 92482 1jy2O 56 1.13e+01 h.1.8.1 67441 2be4A 272 1.14e+01 1k4nA 192 1.24e+01 d.32.1.5 72059 2dfkA 402 1.25e+01 1zg2A 107 1.26e+01 1fseA 74 1.26e+01 1fseA a.4.6.2 60000 1euvB 86 1.27e+01 1a5r d.15.1.1 37598 1i76A 163 1.28e+01 1hfc d.92.1.11 61877 1zjrA 211 1.28e+01 1h5wA 309 1.31e+01 e.27.1.1 65635 1w2xA 758 1.32e+01 c.14.1.4,c.14.1.4 109134,109135 1m12A 84 1.35e+01 a.64.1.1 84745 2bycA 137 1.37e+01 1t6cA 315 1.41e+01 c.55.1.8,c.55.1.8 106558,106559 1jdc 429 1.43e+01 1jdc b.71.1.1,c.1.8.1 27789,28776 1rypA 243 1.47e+01 1pmaA d.153.1.4 41932 1ng6A 148 1.50e+01 a.182.1.1 85670 1nvvS 481 1.51e+01 a.117.1.1 86279 1j2mA 99 1.52e+01 a.165.1.1 84018 1qysA 106 1.53e+01 k.41.1.1 96603 1q5zA 177 1.54e+01 a.196.1.1 95954 8rucI 123 1.55e+01 1rboC d.73.1.1 39629 1k61A 60 1.55e+01 a.4.1.1 77270 1hn4A 131 1.60e+01 a.133.1.2 65893 1uyrA 737 1.62e+01 c.14.1.4,c.14.1.4 100188,100189 1qlpA 394 1.70e+01 1ovaA e.1.1.1 42628 1xttA 216 1.72e+01 2bfdA 400 1.75e+01 1opjA 293 1.79e+01 d.144.1.7 87230 1jggA 60 1.80e+01 2hddA a.4.1.1 62950 1cyx 205 1.81e+01 1cyx b.6.1.2 23023 1pea 385 1.81e+01 1pea c.93.1.1 35662 1dkzA 219 1.81e+01 1dkzA a.8.4.1,b.130.1.1 90345,90346 1fipA 98 1.82e+01 1fipA a.4.1.12 18980 1nrjA 158 1.87e+01 d.110.4.4 86124 1s9pA 227 1.89e+01 a.123.1.1 105384 1v73A 342 1.95e+01 1rxdA 159 2.07e+01 2fjlA 150 2.08e+01 1lngA 87 2.09e+01 d.201.1.1 74045 1eswA 500 2.19e+01 1cwyA c.1.8.1 59500 1x7yA 400 2.22e+01 2d7vA 162 2.24e+01 1gpjA 404 2.25e+01 a.151.1.1,c.2.1.7,d.58.39.1 65451,65452,65453 1ehyA 294 2.31e+01 1ehyA c.69.1.11 34693 2bdeA 470 2.32e+01 1td6A 306 2.37e+01 1vpqA 273 2.41e+01 2lhb 149 2.43e+01 2fal a.1.1.2 15597 2a07F 93 2.46e+01 1rfyA 102 2.47e+01 2g7uA 257 2.47e+01 1sg7A 96 2.47e+01 1nlwB 76 2.52e+01 a.38.1.1 80634 2c5kT 95 2.55e+01 1mhqA 148 2.56e+01 a.118.9.2 84973 1sjiA 350 2.61e+01 2carA 196 2.66e+01 1uzeA 589 2.67e+01 d.92.1.5 108174 1lrzA 426 2.67e+01 a.2.7.4,d.108.1.4,d.108.1.4 78167,78168,78169 1eluA 390 2.68e+01 1elqA c.67.1.3 34434 1ky3A 182 2.68e+01 c.37.1.8 73193 1qfoA 119 2.71e+01 1qfoA b.1.1.1 19708 1gtvA 214 2.74e+01 c.37.1.1 70537 1a92A 50 2.75e+01 1a92A h.4.6.1 45791 1gwiA 411 2.77e+01 a.104.1.1 76364 1fcyA 236 2.84e+01 2lbd a.123.1.1 19282 1unkA 87 2.85e+01 1cei a.28.2.1 16935 1n2aA 201 2.94e+01 a.45.1.1,c.47.1.5 91553,91554 1o5uA 101 3.07e+01 b.82.1.8 92518 1omrA 201 3.07e+01 a.39.1.5 93349 1upqA 123 3.17e+01 1ni9A 338 3.32e+01 e.7.1.2 85739 2fuqA 747 3.36e+01 1r1a1 287 3.37e+01 1aym1 1vrmA 325 3.40e+01 1l9lA 74 3.41e+01 a.64.1.1 77827 2chnA 716 3.43e+01 1zy9A 564 3.50e+01 1pueE 89 3.51e+01 1awcA a.4.5.21 16165 2fp1A 166 3.53e+01 1rm6C 161 3.56e+01 1txjA 171 3.60e+01 b.88.1.2 107424 1ka8A 100 3.64e+01 a.4.5.20 72241 1e9rA 437 3.71e+01 c.37.1.11 64827 1u0sA 86 3.72e+01 d.58.24.1 107565 1u5uA 374 3.73e+01 1qgtA 149 3.79e+01 1qgtA a.62.1.1 18135 1ywzA 175 3.83e+01 1adr 76 3.84e+01 1r69 a.35.1.2 17042 1zt3A 80 3.87e+01 1cjxA 357 3.94e+01 1cjxA d.32.1.3,d.32.1.3 38516,38517 1j09A 468 3.96e+01 a.97.1.1,c.26.1.1 77025,77026 2fm9A 215 4.12e+01 1w99A 558 4.13e+01 1f0yA 302 4.16e+01 2hdhA a.100.1.3,c.2.1.6 18793,30197 1p4kA 295 4.22e+01 d.153.1.5 87772 1t2bA 397 4.30e+01 1xawA 140 4.32e+01 1r1qA 100 4.33e+01 d.93.1.1 104763 2b2yA 187 4.35e+01 2ctdA 96 4.37e+01 1q1uA 144 4.51e+01 b.42.1.1 95608 1l8dA 112 4.52e+01 h.4.12.1 73687 2ga1A 106 4.55e+01 1oh0A 131 4.55e+01 d.17.4.3 87004 1cpq 129 4.59e+01 1cpq a.24.3.2 16556 2fa8A 105 4.64e+01 1aym1 285 4.67e+01 1aym1 1zvaA 77 4.68e+01 1ail 73 4.73e+01 1ail a.16.1.1 16381 1dynA 125 4.74e+01 1dynA b.55.1.1 26955 1v4pA 157 4.75e+01 1pq4A 291 4.77e+01 c.92.2.2 94995 1ygmA 118 4.81e+01 2cbiA 594 4.84e+01 1d7mA 101 4.87e+01 1d7mA h.1.10.1 45628 2hddA 61 4.89e+01 2hddA a.4.1.1 15971 1a4pA 96 4.90e+01 1b4cA a.39.1.2 17176 2c78A 405 4.93e+01 1l6kA 77 4.94e+01 h.6.1.1 77724 2fj6A 82 4.98e+01 1wqgA 185 5.21e+01 1v54D 147 5.26e+01 f.23.1.1 100325 1mijA 152 5.27e+01 a.4.1.1 79150 1lkkA 105 5.28e+01 1lckA d.93.1.1 40412 2spcA 107 5.39e+01 2spcA a.7.1.1 16311 1e19A 314 5.41e+01 1b7bA c.73.1.1 34967 1wqjB 80 5.43e+01 1vdmA 153 5.44e+01 1wmaA 276 5.45e+01 1gcyA 527 5.49e+01 1jdc b.71.1.1,c.1.8.1 27788,28775 1mf7A 194 5.50e+01 c.62.1.1 84937 2cdqA 510 5.56e+01 1t0tV 248 5.59e+01 d.58.4.10 106229 1ysqA 193 5.60e+01 1nf3A 195 5.68e+01 c.37.1.8 85594 2et1A 201 5.68e+01 1qpcA 279 5.68e+01 1fgkA d.144.1.7 41685 1jfmA 174 5.75e+01 d.19.1.1 66640 1ub9A 100 5.76e+01 a.4.5.28 99159 1uuhA 159 5.81e+01 d.169.1.4 100008 1or7A 194 5.87e+01 a.4.13.2,a.177.1.1 87332,87333 1wsrA 375 5.90e+01 2gd5A 179 5.93e+01 1wddS 128 6.00e+01 1zrn 232 6.12e+01 1qq5A c.108.1.1 43323 1z21A 112 6.16e+01 1u2eA 289 6.21e+01 1fus 106 6.23e+01 9rnt d.1.1.4 36050 1eu8A 409 6.45e+01 1eu8A c.94.1.1 59502 2f46A 156 6.46e+01 2d4pA 141 6.47e+01 2c60A 111 6.49e+01 1s9jA 341 6.51e+01 1m7yA 435 6.56e+01 c.67.1.4 78761 1eqfA 280 6.58e+01 1eqfA a.29.2.1,a.29.2.1 16972,16973 2azjA 289 6.58e+01 1mknA 59 6.60e+01 1mknA g.5.1.1 44383 1oxxK 353 6.63e+01 b.40.6.3,c.37.1.12 93715,93716 1unnC 115 6.68e+01 d.240.1.1 99680 1mtyG 162 6.69e+01 1mtyG a.23.3.1 16498 1g6uA 48 6.75e+01 1g6uA k.9.1.1 46425 2ga9D 469 6.77e+01 1ga3A 113 6.87e+01 1ga3A a.26.1.2 60411 1n62A 166 6.91e+01 a.56.1.1,d.15.4.2 80090,80091 1q2hA 69 6.95e+01 a.34.4.1 104498 1r8iA 213 6.98e+01 a.8.7.1 97239 1yxmA 303 7.04e+01 2b0tA 738 7.15e+01 1g8iA 190 7.48e+01 1rec a.39.1.5 60363 2fiyA 309 7.58e+01 1thtA 305 7.63e+01 1thtA c.69.1.13 34711 1sfxA 109 7.67e+01 a.4.5.50 105505 1t7lA 766 7.68e+01 1nrjB 218 7.68e+01 c.37.1.8 86125 1v98A 140 7.77e+01 1qnrA 344 7.90e+01 1qnoA c.1.8.3 28834 1cnzA 363 7.93e+01 1cnzA c.77.1.1 35061 1ur1A 378 8.11e+01 c.1.8.3 99804 1bg1A 722 8.14e+01 1bg1A a.47.1.1,b.2.5.5,d.93.1.1 17767,22461,40527 1vyiA 112 8.18e+01 1ccwB 483 8.22e+01 1cb7B c.1.19.2 29646 1p90A 145 8.27e+01 c.55.5.2 94377 1k8rB 110 8.35e+01 d.15.1.5 72180 1fgyA 127 8.38e+01 1faoA b.55.1.1 26976 2c8vA 288 8.40e+01 1gmjA 84 8.42e+01 h.4.8.1 65310 1sheA 103 8.43e+01 d.274.1.1 105551 2d2sA 235 8.47e+01 1vdiA 52 8.50e+01 1kktA 511 8.51e+01 a.102.2.1 68687 1ig5A 75 8.54e+01 4icb a.39.1.1 62363 1dbfA 127 8.55e+01 2chsA d.79.1.2 39761 1yg2A 179 8.56e+01 1m0wA 491 8.58e+01 c.30.1.4,d.142.1.6 78363,78364 1ro0A 216 8.65e+01 d.264.1.2 97664 1gs9A 165 8.68e+01 a.24.1.1 83313 1ub0A 258 8.72e+01 c.72.1.2 88394 1zx2A 147 8.73e+01 1oa4A 222 8.73e+01 b.29.1.11 86731 1gl2B 65 8.74e+01 h.1.15.1 65279 1w32A 348 8.76e+01 1s69A 124 8.78e+01 a.1.1.1 105305 1z5yE 149 8.79e+01 1riiA 265 8.80e+01 2alaA 391 8.80e+01 2fu2A 102 8.82e+01 2g0uA 92 8.86e+01 1lm8V 160 8.90e+01 b.3.3.1 74035 1aquA 297 8.92e+01 1aquA c.37.1.5 31942 1v95A 130 8.99e+01 c.51.1.1 108435